Rorug05G0201400

Serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
19982164 .. 19983207
1044 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0201400.1

Sequence Viewer

Length: 1044 bp
ATGGGCGGTGGAGGACTCCCATATGGGGTCGCAAACGCTGAAAGAGGCAAGAGAGCCAGTGAGCTCGTAATTGGGGACTTGGTGACGCATTCCAACCCCGCCGAGTTCTCATTCACTGTTGCAGATCTGTCACCGAAAAAGGTGGCTGCAGTAGCTGAAATAGGCTACGAGAGTCTGTTGGATATTGGCTGCAACACCCTTGTCGGGCCCGTTTGGAGGATGATGGTGCAACAAATCGACCTCAGGGACCACACAGTGTCAATTCACGGTCGCACGTATCCAATAAACGCGGAGGAGTTCGGCCGCGTTATGGGAGTGCGTGATGGGGGTTCAGATTTTGATTTGGGAGCTGCTGCAGATGCGGCTGAATATGGGGCGGTTGTCGATGACCTATGCGACAGTGCAGGTAGGATTCATTATTGTCTTCTGGAGAAGATTGTGAGGGAACGTGATCAGGTTGACGCCACTTTCCAGATTGCCTTCGCCTTGCTTGCACTGGGTCTAGTGTTGTGCCCCGGGACAGTGGACGCGATTGACACCTCCATGCTACTGCCACTGCTGGAAACCGGTCAGATTGTGAAGAAAAATTGGGCCTCGTTCTGTGTGAAAAGGTTGGAAGAAGAGGTTAAGAATCAGAGGGAATTTGGGGACGGTGTGGTTGGAGAGTGCGTATTGTTTCTGCAGGTTCTTTACTTCGACAAGGTCGGGGAGGCAACCTTTCACATCGATAGGTCAATTCTACCACTCAGGGCATGGGGAGATTTTGAGGTTAGGGAGTTGATTGGCATGATCAGAACATATGGTGGTTTCAAGAGCCCAATTGTTTTGATGGAAAGGAGTAAGCGTTCGAAGATGGTAAGTAAGTGCTGTGTGGATGACGGTGCGTTTGGACTAGGACTAAGGAGGGGGGTTCATGAGGACATTTTCGATGTAAAGTTGGAAATGATGGGGTTTAAGAATGACTTGTGCAGGCTCCGGGATGTTGTTGGAAAGCTCCAGCCGGACATGGTGGAGGTTACAAGGAAAGTAGAGATTATAGTATAG

Protein Analysis

347

Amino Acids

38.21

Weight (kDa)

5.17

Isoelectric Point (pI)

30.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 395, 673
AccII CGCG 3 cut(s) 290, 306, 530
AciI CCGC 6 cut(s) 6, 99, 290, 304, 362, 377
AcoI YGGCCR 1 cut(s) 301
AcsI RAATTY 1 cut(s) 641
AcyI GRCGYC 1 cut(s) 462
AdeI CACNNNGTG 1 cut(s) 256
AfiI CCNNNNNNNGG 4 cut(s) 25, 204, 216, 310
AgeI ACCGGT 1 cut(s) 566
AgsI TTSAA 1 cut(s) 811
AloI GAACNNNNNNTCC 2 cut(s) 829, 861
AluBI AGCT 4 cut(s) 64, 155, 350, 994
AluI AGCT 4 cut(s) 64, 155, 350, 994
Alw21I GWGCWC 1 cut(s) 66
AlwNI CAGNNNCTG 1 cut(s) 155
Ama87I CYCGRG 1 cut(s) 515
AoxI GGCC 3 cut(s) 206, 301, 591
ApaI GGGCCC 1 cut(s) 210
ApeKI GCWGC 4 cut(s) 146, 189, 350, 353
ApoI RAATTY 1 cut(s) 641
ArsI GACNNNNNNTTYG 2 cut(s) 869, 901
AsiGI ACCGGT 1 cut(s) 566
AspS9I GGNCC 4 cut(s) 206, 207, 247, 591
AsuC2I CCSGG 3 cut(s) 516, 517, 977
AsuHPI GGTGA 2 cut(s) 94, 123
AsuII TTCGAA 1 cut(s) 848
AvaI CYCGRG 1 cut(s) 515
AvaII GGWCC 1 cut(s) 247
AxyI CCTNAGG 1 cut(s) 242
BaeGI GKGCMC 2 cut(s) 210, 515
BanII GRGCYC 3 cut(s) 66, 210, 818
BbsI GAAGAC 1 cut(s) 416
Bbv12I GWGCWC 1 cut(s) 66
BbvI GCAGC 4 cut(s) 133, 176, 337, 340
BccI CCATC 5 cut(s) 217, 317, 823, 847, 940
BciVI GTATCC 1 cut(s) 288
BclI TGATCA 2 cut(s) 451, 789
BcnI CCSGG 3 cut(s) 516, 517, 977
BfaI CTAG 2 cut(s) 503, 893
BfmI CTRYAG 3 cut(s) 147, 354, 680
BfuAI ACCTGC 2 cut(s) 395, 673
BfuI GTATCC 1 cut(s) 288
BglII AGATCT 1 cut(s) 124
BisI GCNGC 6 cut(s) 147, 190, 304, 351, 354, 363
BlsI GCNGC 6 cut(s) 148, 191, 305, 352, 355, 364
Bme1390I CCNGG 3 cut(s) 516, 517, 977
Bme18I GGWCC 1 cut(s) 247
BmeT110I CYCGRG 1 cut(s) 515
BmgT120I GGNCC 4 cut(s) 206, 207, 247, 591
BmiI GGNNCC 3 cut(s) 208, 248, 974
BmrFI CCNGG 3 cut(s) 516, 517, 977
BmrI ACTGGG 1 cut(s) 506
BmsI GCATC 1 cut(s) 349
BmuI ACTGGG 1 cut(s) 506
BpiI GAAGAC 1 cut(s) 416
BpmI CTGGAG 2 cut(s) 449, 980
Bpu14I TTCGAA 1 cut(s) 848
BpuMI CCSGG 3 cut(s) 516, 517, 977
Bsa29I ATCGAT 1 cut(s) 726
BsaAI YACGTR 1 cut(s) 276
BsaHI GRCGYC 1 cut(s) 462
BsaJI CCNNGG 2 cut(s) 514, 515
BsaWI WCCGGW 1 cut(s) 566
BsaXI ACNNNNNCTCC 4 cut(s) 654, 684, 829, 859
Bsc4I CCNNNNNNNGG 4 cut(s) 25, 204, 216, 310
Bse118I RCCGGY 1 cut(s) 566
Bse1I ACTGG 2 cut(s) 57, 501
Bse21I CCTNAGG 1 cut(s) 242
BseCI ATCGAT 1 cut(s) 726
BseDI CCNNGG 2 cut(s) 514, 515
BseGI GGATG 3 cut(s) 225, 880, 985
BseLI CCNNNNNNNGG 4 cut(s) 25, 204, 216, 310
BseMII CTCAG 2 cut(s) 256, 760
BseNI ACTGG 2 cut(s) 57, 501
BseRI GAGGAG 1 cut(s) 308
BseSI GKGCMC 2 cut(s) 210, 515
BseX3I CGGCCG 1 cut(s) 301
BseXI GCAGC 4 cut(s) 133, 176, 337, 340
BsgI GTGCAG 2 cut(s) 423, 988
Bsh1236I CGCG 3 cut(s) 290, 306, 530
Bsh1285I CGRYCG 2 cut(s) 271, 304
BshFI GGCC 3 cut(s) 208, 303, 593
BshTI ACCGGT 1 cut(s) 566
BshVI ATCGAT 1 cut(s) 726
BsiEI CGRYCG 2 cut(s) 271, 304
BsiHKAI GWGCWC 1 cut(s) 66
BsiHKCI CYCGRG 1 cut(s) 515
BsiSI CCGG 4 cut(s) 516, 567, 976, 1001
BslFI GGGAC 4 cut(s) 89, 260, 532, 662
BslI CCNNNNNNNGG 4 cut(s) 25, 204, 216, 310
BsmFI GGGAC 4 cut(s) 89, 260, 532, 662
BsmI GAATGC 1 cut(s) 88
BsnI GGCC 3 cut(s) 208, 303, 593
BsoBI CYCGRG 1 cut(s) 515
Bsp119I TTCGAA 1 cut(s) 848
Bsp120I GGGCCC 1 cut(s) 206
Bsp1286I GDGCHC 4 cut(s) 66, 210, 515, 818
Bsp143I GATC 3 cut(s) 124, 451, 789
BspACI CCGC 6 cut(s) 6, 99, 290, 304, 362, 377
BspANI GGCC 3 cut(s) 208, 303, 593
BspCNI CTCAG 2 cut(s) 255, 759
BspDI ATCGAT 1 cut(s) 726
BspFNI CGCG 3 cut(s) 290, 306, 530
BspHI TCATGA 1 cut(s) 913
BspLI GGNNCC 3 cut(s) 208, 248, 974
BspMAI CTGCAG 3 cut(s) 151, 358, 684
BspMI ACCTGC 2 cut(s) 395, 673
BspT104I TTCGAA 1 cut(s) 848
BsrFI RCCGGY 1 cut(s) 566
BsrI ACTGG 2 cut(s) 57, 501
BssAI RCCGGY 1 cut(s) 566
BssECI CCNNGG 2 cut(s) 514, 515
BssMI GATC 3 cut(s) 124, 451, 789
BssNI GRCGYC 1 cut(s) 462
Bst4CI ACNGT 7 cut(s) 118, 256, 269, 401, 523, 653, 881
Bst6I CTCTTC 1 cut(s) 615
BstACI GRCGYC 1 cut(s) 462
BstBAI YACGTR 1 cut(s) 276
BstBI TTCGAA 1 cut(s) 848
BstC8I GCNNGC 2 cut(s) 492, 971
BstDEI CTNAG 3 cut(s) 242, 746, 899
BstF5I GGATG 3 cut(s) 225, 880, 985
BstFNI CGCG 3 cut(s) 290, 306, 530
BstKTI GATC 3 cut(s) 127, 454, 792
BstMBI GATC 3 cut(s) 124, 451, 789
BstMCI CGRYCG 2 cut(s) 271, 304
BstMWI GCNNNNNNNGC 4 cut(s) 152, 359, 362, 491
BstSCI CCNGG 3 cut(s) 514, 515, 975
BstSFI CTRYAG 3 cut(s) 147, 354, 680
BstSLI GKGCMC 2 cut(s) 210, 515
BstUI CGCG 3 cut(s) 290, 306, 530
BstV1I GCAGC 4 cut(s) 133, 176, 337, 340
BstV2I GAAGAC 1 cut(s) 416
BstX2I RGATCY 1 cut(s) 124
BstYI RGATCY 1 cut(s) 124
BstZI CGGCCG 1 cut(s) 301
Bsu15I ATCGAT 1 cut(s) 726
Bsu36I CCTNAGG 1 cut(s) 242
BsuI GTATCC 1 cut(s) 288
BsuRI GGCC 3 cut(s) 208, 303, 593
BsuTUI ATCGAT 1 cut(s) 726
BtsCI GGATG 3 cut(s) 225, 880, 985
BtsI GCAGTG 1 cut(s) 554
BtsIMutI CAGTG 7 cut(s) 64, 114, 261, 406, 494, 528, 554
BveI ACCTGC 2 cut(s) 395, 673
Cac8I GCNNGC 2 cut(s) 492, 971
CaiI CAGNNNCTG 1 cut(s) 155
CciI TCATGA 1 cut(s) 913
Cfr10I RCCGGY 1 cut(s) 566
Cfr13I GGNCC 4 cut(s) 206, 207, 247, 591
Cfr9I CCCGGG 1 cut(s) 515
ClaI ATCGAT 1 cut(s) 726
CseI GACGC 3 cut(s) 94, 470, 536
CspAI ACCGGT 1 cut(s) 566
CviAII CATG 5 cut(s) 544, 753, 787, 914, 1006
DdeI CTNAG 3 cut(s) 242, 746, 899
DpnI GATC 3 cut(s) 126, 453, 791
DpnII GATC 3 cut(s) 124, 451, 789
DraIII CACNNNGTG 1 cut(s) 256
EaeI YGGCCR 1 cut(s) 301
EagI CGGCCG 1 cut(s) 301
Eam1104I CTCTTC 1 cut(s) 615
EarI CTCTTC 1 cut(s) 615
Ecl136II GAGCTC 1 cut(s) 64
EclXI CGGCCG 1 cut(s) 301
Eco24I GRGCYC 3 cut(s) 66, 210, 818
Eco47I GGWCC 1 cut(s) 247
Eco52I CGGCCG 1 cut(s) 301
Eco53kI GAGCTC 1 cut(s) 64
Eco81I CCTNAGG 1 cut(s) 242
Eco88I CYCGRG 1 cut(s) 515
EcoICRI GAGCTC 1 cut(s) 64
EcoT38I GRGCYC 3 cut(s) 66, 210, 818
FaeI CATG 5 cut(s) 547, 756, 790, 917, 1009
FalI AAGNNNNNCTT 2 cut(s) 947, 979
FaqI GGGAC 4 cut(s) 89, 260, 532, 662
FatI CATG 5 cut(s) 543, 752, 786, 913, 1005
FauI CCCGC 1 cut(s) 106
FauNDI CATATG 2 cut(s) 22, 799
FbaI TGATCA 2 cut(s) 451, 789
Fnu4HI GCNGC 6 cut(s) 147, 190, 304, 351, 354, 363
FokI GGATG 3 cut(s) 232, 887, 992
FriOI GRGCYC 3 cut(s) 66, 210, 818
Fsp4HI GCNGC 6 cut(s) 147, 190, 304, 351, 354, 363
FspBI CTAG 2 cut(s) 503, 893
GluI GCNGC 6 cut(s) 147, 190, 304, 351, 354, 363
GsuI CTGGAG 2 cut(s) 449, 980
HaeIII GGCC 3 cut(s) 208, 303, 593
HapII CCGG 4 cut(s) 516, 567, 976, 1001
HgaI GACGC 3 cut(s) 94, 470, 536
Hin1I GRCGYC 1 cut(s) 462
Hin1II CATG 5 cut(s) 547, 756, 790, 917, 1009
HincII GTYRAC 1 cut(s) 460
HindII GTYRAC 1 cut(s) 460
HinfI GANTC 4 cut(s) 15, 172, 412, 631
HpaII CCGG 4 cut(s) 516, 567, 976, 1001
HphI GGTGA 2 cut(s) 94, 123
Hpy166II GTNNAC 2 cut(s) 460, 526
Hpy188I TCNGA 4 cut(s) 334, 573, 636, 794
Hpy188III TCNNGA 4 cut(s) 428, 472, 811, 914
Hpy8I GTNNAC 2 cut(s) 460, 526
HpyAV CCTTC 1 cut(s) 490
HpyCH4III ACNGT 7 cut(s) 118, 256, 269, 401, 523, 653, 881
HpyCH4IV ACGT 2 cut(s) 275, 448
HpyCH4V TGCA 9 cut(s) 122, 149, 192, 229, 356, 404, 494, 682, 969
HpyF10VI GCNNNNNNNGC 4 cut(s) 152, 359, 362, 491
HpyF3I CTNAG 3 cut(s) 242, 746, 899
HpySE526I ACGT 2 cut(s) 275, 448
Hsp92I GRCGYC 1 cut(s) 462
Hsp92II CATG 5 cut(s) 547, 756, 790, 917, 1009
Ksp22I TGATCA 2 cut(s) 451, 789
Kzo9I GATC 3 cut(s) 124, 451, 789
LmnI GCTCC 3 cut(s) 347, 978, 999
Lsp1109I GCAGC 4 cut(s) 133, 176, 337, 340
LweI GCATC 1 cut(s) 349
MaeI CTAG 2 cut(s) 503, 893
MaeII ACGT 2 cut(s) 275, 448
MaeIII GTNAC 3 cut(s) 82, 129, 1015
MalI GATC 3 cut(s) 126, 453, 791
MboI GATC 3 cut(s) 124, 451, 789
MboII GAAGA 6 cut(s) 416, 445, 592, 629, 632, 862
MfeI CAATTG 1 cut(s) 819
MflI RGATCY 1 cut(s) 124
MhlI GDGCHC 4 cut(s) 66, 210, 515, 818
MluCI AATT 6 cut(s) 69, 261, 586, 641, 735, 819
MlyI GAGTC 2 cut(s) 9, 181
MmeI TCCRAC 6 cut(s) 117, 159, 594, 640, 918, 967
MseI TTAA 2 cut(s) 627, 954
MslI CAYNNNNRTG 1 cut(s) 542
MspI CCGG 4 cut(s) 516, 567, 976, 1001
MspR9I CCNGG 3 cut(s) 516, 517, 977
MunI CAATTG 1 cut(s) 819
Mva1269I GAATGC 1 cut(s) 88
MvnI CGCG 3 cut(s) 290, 306, 530
MwoI GCNNNNNNNGC 4 cut(s) 152, 359, 362, 491
NciI CCSGG 3 cut(s) 516, 517, 977
NdeI CATATG 2 cut(s) 22, 799
NdeII GATC 3 cut(s) 124, 451, 789
NlaIII CATG 5 cut(s) 547, 756, 790, 917, 1009
NlaIV GGNNCC 3 cut(s) 208, 248, 974
NmeAIII GCCGAG 1 cut(s) 127
NmuCI GTSAC 2 cut(s) 82, 129
NspV TTCGAA 1 cut(s) 848
PagI TCATGA 1 cut(s) 913
PctI GAATGC 1 cut(s) 88
PfeI GAWTC 2 cut(s) 412, 631
PflFI GACNNNGTC 1 cut(s) 701
PfoI TCCNGGA 1 cut(s) 975
PinAI ACCGGT 1 cut(s) 566
PkrI GCNGC 6 cut(s) 148, 191, 305, 352, 355, 364
PleI GAGTC 2 cut(s) 9, 180
PpsI GAGTC 2 cut(s) 9, 180
Ppu21I YACGTR 1 cut(s) 276
Psp124BI GAGCTC 1 cut(s) 66
PspN4I GGNNCC 3 cut(s) 208, 248, 974
PspOMI GGGCCC 1 cut(s) 206
PspPI GGNCC 4 cut(s) 206, 207, 247, 591
PstI CTGCAG 3 cut(s) 151, 358, 684
PstNI CAGNNNCTG 1 cut(s) 155
PsuI RGATCY 1 cut(s) 124
PsyI GACNNNGTC 1 cut(s) 701
RseI CAYNNNNRTG 1 cut(s) 542
SacI GAGCTC 1 cut(s) 66
SaqAI TTAA 2 cut(s) 627, 954
SatI GCNGC 6 cut(s) 147, 190, 304, 351, 354, 363
Sau3AI GATC 3 cut(s) 124, 451, 789
Sau96I GGNCC 4 cut(s) 206, 207, 247, 591
SchI GAGTC 2 cut(s) 9, 181
ScrFI CCNGG 3 cut(s) 516, 517, 977
SduI GDGCHC 4 cut(s) 66, 210, 515, 818
SfaNI GCATC 1 cut(s) 349
SfcI CTRYAG 3 cut(s) 147, 354, 680
SfuI TTCGAA 1 cut(s) 848
SinI GGWCC 1 cut(s) 247
SmaI CCCGGG 1 cut(s) 517
SmiMI CAYNNNNRTG 1 cut(s) 542
Sse9I AATT 6 cut(s) 69, 261, 586, 641, 735, 819
SsiI CCGC 6 cut(s) 6, 99, 290, 304, 362, 377
SspMI CTAG 2 cut(s) 503, 893
SstI GAGCTC 1 cut(s) 66
StyD4I CCNGG 3 cut(s) 514, 515, 975
TaaI ACNGT 7 cut(s) 118, 256, 269, 401, 523, 653, 881
TaiI ACGT 2 cut(s) 278, 451
TaqI TCGA 6 cut(s) 237, 384, 696, 726, 848, 927
TasI AATT 6 cut(s) 69, 261, 586, 641, 735, 819
TauI GCSGC 2 cut(s) 306, 365
TfiI GAWTC 2 cut(s) 412, 631
Tru1I TTAA 2 cut(s) 627, 954
Tru9I TTAA 2 cut(s) 627, 954
TscAI CASTG 7 cut(s) 64, 121, 261, 406, 501, 528, 561
TseFI GTSAC 2 cut(s) 82, 129
TseI GCWGC 4 cut(s) 146, 189, 350, 353
Tsp45I GTSAC 2 cut(s) 82, 129
TspDTI ATGAA 2 cut(s) 404, 902
TspMI CCCGGG 1 cut(s) 515
TspRI CASTG 7 cut(s) 64, 121, 261, 406, 501, 528, 561
Tth111I GACNNNGTC 1 cut(s) 701
VpaK11BI GGWCC 1 cut(s) 247
XapI RAATTY 1 cut(s) 641
XcmI CCANNNNNNNNNTGG 1 cut(s) 750
XmaI CCCGGG 1 cut(s) 515
XspI CTAG 2 cut(s) 503, 893
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.