Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001260

Physical Location & Seq

Genomic Coordinates Reverse (-)

32668734 .. 32669594

Gene Structure 861 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ31667

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGGCAGTCAAGGATCCTAATACTTTTGATCCAGATTCCGAACCATTTGTGGAGGTTGATCCAACCGGGCGTTTTGGAAGGTATGATGTTCTCCTTGGTAAGGGTGCTGTGAAGAAGGTGTATAGGGCATTTGATCAGCAGCAAGGTAACGAGGTGGCATGGAATAAGGTGTGGTTAAAGAAATTGAGCGACGATCCAGTGCTATCGAATCATTTGGACGCAGAGATTAAGCTATTGAGAGAGTTGGAGAACAAGTATATCATTGAATGTTACAGTGTTTGGAAGGATGTCAAGCGTAATGCTTTGAATTTCGTCACTGAGGTGTGCAATTCTGGGAACCTGAGGGATTATAGGAAAAAGCATCACCGTGTGAATACCAAGGCTTTGAAGAAGTGGTCAAAGCAGGTGCTTGAGGGATTGGAGTACCTCCATACACATGAGCCATGTATCATTCACAGAGATCTCAATTGCGTCAATGGGAATAATGGCCAGGTGAAGATCGGTGATCTGGGACTTGCAGCAACAGTGGGTGGGAGCCACAAAGCTCACACAGTTATGGGGACACCTGAGTTTATGGCACCTGAACTATACGAGGAGGATTACAATGAGATGGTGGACATATATTCGTTTGGGATGTGCTTGCTGGAGATGGCAACAAGGGAGATACCATACAGTGAATGTGAAACTGTTGTCAAGATTTACAGGAAGGTCTCAACTGGTATAAGGCCTGAATCCTTGTCCAAGGTGACCGATCCAGAGGTGAAGGCATTTATTGAGAAATCCCTAGGTCAGCCGAGGGCAAGACCTTCAGCCTCTGAGCTACTCAGAGACCCCTTCTTTTCTCAAGTCATTGCCGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

286

Amino Acids

32.58

Weight (kDa)

6.28

Isoelectric Point (pI)

30.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	31 - 280	1.9e-46	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	31 - 276	8.1e-33	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001260)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55560
fragaria_vesca	FvH4_3g22150 FvH4_6g41240
malus_domestica	MD03G1189000.v1.1 MD09G1121400.v1.1 MD11G1205200.v1.1 MD17G1112400.v1.1
prunus_persica	Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.4G232100_v2.0.a1 Prupe.4G232100_v2.0.a1
pyrus_communis	pycom03g14190 pycom03g14210 pycom09g04580 pycom11g17800 pycom17g10410
rosa_chinensis	RchiOBHm_Chr2g0156791 RchiOBHm_Chr5g0038001 RchiOBHm_Chr5g0038041 RchiOBHm_Chr5g0042541
rosa_laevigata	RLG00000020942 RLG00000034135
rosa_multiflora	Rmu_co8331393.1_g000001 Rmu_co8390513.1_g000001 Rmu_sc0002670.1_g000011 Rmu_sc0008149.1_g000008 Rmu_sc0008278.1_g000004
rosa_roxburghii	Rroxscaffold_1G00038120 Rroxscaffold_1G00042890 Rroxscaffold_2G00092720
rosa_rugosa	Rorug02G0456200 Rorug05G0170100 Rorug05G0201300 Rorug05G0201400
rosa_samantha	Rh2AG521800 Rh2BG535200 Rh2CG506700 Rh2DG544200 Rh5BG261300 Rh5BG261600 Rh5BG291700 Rh5CG293600 Rh5CG323900 Rh5DG270500 Rh5DG270600 Rh5DG301500
rosa_wichuraiana	Rw2G043080 Rw5G023930 Rw5G024110 Rw5G024140 Rw5G026670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	394
Acc36I	ACCTGC	1 cut(s)	394
AccB1I	GGYRCC	1 cut(s)	577
AclWI	GGATC	6 cut(s)	8, 21, 23, 53, 188, 746
AcoI	YGGCCR	1 cut(s)	487
AcsI	RAATTY	1 cut(s)	307
AcuI	CTGAAG	1 cut(s)	792
AdeI	CACNNNGTG	1 cut(s)	370
AfaI	GTAC	1 cut(s)	425
AfiI	CCNNNNNNNGG	1 cut(s)	100
AgsI	TTSAA	3 cut(s)	266, 307, 388
AjnI	CCWGG	1 cut(s)	489
AleI	CACNNNNGTG	1 cut(s)	320
AluBI	AGCT	3 cut(s)	232, 545, 820
AluI	AGCT	3 cut(s)	232, 545, 820
Alw26I	GTCTC	2 cut(s)	715, 822
AlwI	GGATC	6 cut(s)	8, 21, 23, 53, 188, 746
AlwNI	CAGNNNCTG	1 cut(s)	815
AoxI	GGCC	2 cut(s)	487, 725
ApeKI	GCWGC	2 cut(s)	139, 518
ApoI	RAATTY	1 cut(s)	307
AspA2I	CCTAGG	1 cut(s)	784
AsuC2I	CCSGG	1 cut(s)	67
AsuHPI	GGTGA	5 cut(s)	356, 505, 515, 757, 772
AvrII	CCTAGG	1 cut(s)	784
AxyI	CCTNAGG	1 cut(s)	341
BalI	TGGCCA	1 cut(s)	489
BamHI	GGATCC	1 cut(s)	13
BanI	GGYRCC	1 cut(s)	577
BbvI	GCAGC	2 cut(s)	151, 530
BccI	CCATC	2 cut(s)	604, 643
BciT130I	CCWGG	1 cut(s)	491
BclI	TGATCA	1 cut(s)	133
BcnI	CCSGG	1 cut(s)	67
BcoDI	GTCTC	2 cut(s)	715, 822
BfaI	CTAG	1 cut(s)	785
BfuAI	ACCTGC	1 cut(s)	394
BglII	AGATCT	1 cut(s)	460
BisI	GCNGC	2 cut(s)	140, 519
BlnI	CCTAGG	1 cut(s)	784
BlsI	GCNGC	2 cut(s)	141, 520
Bme1390I	CCNGG	2 cut(s)	67, 491
BmiI	GGNNCC	4 cut(s)	15, 338, 536, 579
BmrFI	CCNGG	2 cut(s)	67, 491
BmsI	GCATC	1 cut(s)	370
BpmI	CTGGAG	1 cut(s)	665
BpuEI	CTTGAG	2 cut(s)	431, 828
BpuMI	CCSGG	1 cut(s)	67
BsaI	GGTCTC	2 cut(s)	715, 822
BsaJI	CCNNGG	5 cut(s)	94, 378, 741, 784, 794
BsaXI	ACNNNNNCTCC	2 cut(s)	239, 269
Bsc4I	CCNNNNNNNGG	1 cut(s)	100
Bse1I	ACTGG	2 cut(s)	197, 721
Bse21I	CCTNAGG	1 cut(s)	341
Bse3DI	GCAATG	1 cut(s)	849
BseBI	CCWGG	1 cut(s)	491
BseDI	CCNNGG	5 cut(s)	94, 378, 741, 784, 794
BseGI	GGATG	2 cut(s)	292, 639
BseLI	CCNNNNNNNGG	1 cut(s)	100
BseMI	GCAATG	1 cut(s)	849
BseMII	CTCAG	5 cut(s)	309, 332, 558, 807, 838
BseNI	ACTGG	2 cut(s)	197, 721
BseRI	GAGGAG	1 cut(s)	608
BseXI	GCAGC	2 cut(s)	151, 530
BshFI	GGCC	2 cut(s)	489, 727
BshNI	GGYRCC	1 cut(s)	577
BsiSI	CCGG	1 cut(s)	66
BslFI	GGGAC	2 cut(s)	525, 574
BslI	CCNNNNNNNGG	1 cut(s)	100
BsmAI	GTCTC	2 cut(s)	715, 822
BsmFI	GGGAC	2 cut(s)	525, 574
BsnI	GGCC	2 cut(s)	489, 727
Bso31I	GGTCTC	2 cut(s)	715, 822
Bsp143I	GATC	9 cut(s)	13, 28, 58, 133, 193, 460, 498, 505, 751
BspANI	GGCC	2 cut(s)	489, 727
BspCNI	CTCAG	5 cut(s)	310, 333, 559, 808, 837
BspLI	GGNNCC	4 cut(s)	15, 338, 536, 579
BspMI	ACCTGC	1 cut(s)	394
BspPI	GGATC	6 cut(s)	8, 21, 23, 53, 188, 746
BspT107I	GGYRCC	1 cut(s)	577
BspTNI	GGTCTC	2 cut(s)	715, 822
BsrDI	GCAATG	1 cut(s)	849
BsrI	ACTGG	2 cut(s)	197, 721
BssECI	CCNNGG	5 cut(s)	94, 378, 741, 784, 794
BssMI	GATC	9 cut(s)	13, 28, 58, 133, 193, 460, 498, 505, 751
BssT1I	CCWWGG	4 cut(s)	94, 378, 741, 784
Bst2UI	CCWGG	1 cut(s)	491
Bst4CI	ACNGT	6 cut(s)	275, 368, 526, 553, 674, 688
BstC8I	GCNNGC	1 cut(s)	641
BstDEI	CTNAG	5 cut(s)	318, 341, 567, 816, 824
BstEII	GGTNACC	1 cut(s)	745
BstENI	CCTNNNNNAGG	1 cut(s)	98
BstF5I	GGATG	2 cut(s)	292, 639
BstKTI	GATC	9 cut(s)	16, 31, 61, 136, 196, 463, 501, 508, 754
BstMAI	GTCTC	2 cut(s)	715, 822
BstMBI	GATC	9 cut(s)	13, 28, 58, 133, 193, 460, 498, 505, 751
BstNI	CCWGG	1 cut(s)	491
BstPI	GGTNACC	1 cut(s)	745
BstSCI	CCNGG	2 cut(s)	65, 489
BstV1I	GCAGC	2 cut(s)	151, 530
BstX2I	RGATCY	2 cut(s)	13, 460
BstYI	RGATCY	2 cut(s)	13, 460
Bsu36I	CCTNAGG	1 cut(s)	341
BsuRI	GGCC	2 cut(s)	489, 727
BtsCI	GGATG	2 cut(s)	292, 639
BtsIMutI	CAGTG	5 cut(s)	204, 280, 315, 531, 679
BveI	ACCTGC	1 cut(s)	394
Cac8I	GCNNGC	1 cut(s)	641
CaiI	CAGNNNCTG	1 cut(s)	815
CseI	GACGC	2 cut(s)	227, 460
Csp6I	GTAC	1 cut(s)	424
CviAII	CATG	3 cut(s)	159, 437, 444
CviQI	GTAC	1 cut(s)	424
DdeI	CTNAG	5 cut(s)	318, 341, 567, 816, 824
DpnI	GATC	9 cut(s)	15, 30, 60, 135, 195, 462, 500, 507, 753
DpnII	GATC	9 cut(s)	13, 28, 58, 133, 193, 460, 498, 505, 751
DraIII	CACNNNGTG	1 cut(s)	370
EaeI	YGGCCR	1 cut(s)	487
Eco130I	CCWWGG	4 cut(s)	94, 378, 741, 784
Eco147I	AGGCCT	1 cut(s)	727
Eco31I	GGTCTC	2 cut(s)	715, 822
Eco57I	CTGAAG	1 cut(s)	792
Eco81I	CCTNAGG	1 cut(s)	341
Eco91I	GGTNACC	1 cut(s)	745
EcoNI	CCTNNNNNAGG	1 cut(s)	98
EcoO65I	GGTNACC	1 cut(s)	745
EcoRII	CCWGG	1 cut(s)	489
EcoT14I	CCWWGG	4 cut(s)	94, 378, 741, 784
ErhI	CCWWGG	4 cut(s)	94, 378, 741, 784
FaeI	CATG	3 cut(s)	162, 440, 447
FaqI	GGGAC	2 cut(s)	525, 574
FatI	CATG	3 cut(s)	158, 436, 443
FbaI	TGATCA	1 cut(s)	133
Fnu4HI	GCNGC	2 cut(s)	140, 519
FokI	GGATG	2 cut(s)	299, 646
Fsp4HI	GCNGC	2 cut(s)	140, 519
FspBI	CTAG	1 cut(s)	785
GluI	GCNGC	2 cut(s)	140, 519
GsuI	CTGGAG	1 cut(s)	665
HaeIII	GGCC	2 cut(s)	489, 727
HapII	CCGG	1 cut(s)	66
HgaI	GACGC	2 cut(s)	227, 460
Hin1II	CATG	3 cut(s)	162, 440, 447
HinfI	GANTC	3 cut(s)	35, 208, 731
HpaII	CCGG	1 cut(s)	66
HphI	GGTGA	5 cut(s)	356, 505, 515, 757, 772
Hpy166II	GTNNAC	1 cut(s)	616
Hpy188I	TCNGA	3 cut(s)	40, 817, 827
Hpy188III	TCNNGA	3 cut(s)	32, 694, 755
Hpy8I	GTNNAC	1 cut(s)	616
Hpy99I	CGWCG	1 cut(s)	194
HpyAV	CCTTC	7 cut(s)	72, 109, 277, 700, 757, 816, 844
HpyCH4III	ACNGT	6 cut(s)	275, 368, 526, 553, 674, 688
HpyCH4V	TGCA	2 cut(s)	327, 518
HpyF3I	CTNAG	5 cut(s)	318, 341, 567, 816, 824
Hsp92II	CATG	3 cut(s)	162, 440, 447
Ksp22I	TGATCA	1 cut(s)	133
Kzo9I	GATC	9 cut(s)	13, 28, 58, 133, 193, 460, 498, 505, 751
LmnI	GCTCC	1 cut(s)	534
Lsp1109I	GCAGC	2 cut(s)	151, 530
LweI	GCATC	1 cut(s)	370
MaeI	CTAG	1 cut(s)	785
MaeIII	GTNAC	4 cut(s)	146, 269, 313, 745
MalI	GATC	9 cut(s)	15, 30, 60, 135, 195, 462, 500, 507, 753
MboI	GATC	9 cut(s)	13, 28, 58, 133, 193, 460, 498, 505, 751
MboII	GAAGA	3 cut(s)	124, 400, 508
MfeI	CAATTG	1 cut(s)	466
MflI	RGATCY	2 cut(s)	13, 460
MlsI	TGGCCA	1 cut(s)	489
MluCI	AATT	4 cut(s)	182, 307, 328, 466
MluNI	TGGCCA	1 cut(s)	489
MmeI	TCCRAC	2 cut(s)	86, 225
Mox20I	TGGCCA	1 cut(s)	489
MscI	TGGCCA	1 cut(s)	489
MseI	TTAA	2 cut(s)	176, 228
MslI	CAYNNNNRTG	4 cut(s)	320, 366, 435, 554
Msp20I	TGGCCA	1 cut(s)	489
MspI	CCGG	1 cut(s)	66
MspR9I	CCNGG	2 cut(s)	67, 491
MunI	CAATTG	1 cut(s)	466
MvaI	CCWGG	1 cut(s)	491
NciI	CCSGG	1 cut(s)	67
NdeII	GATC	9 cut(s)	13, 28, 58, 133, 193, 460, 498, 505, 751
NlaIII	CATG	3 cut(s)	162, 440, 447
NlaIV	GGNNCC	4 cut(s)	15, 338, 536, 579
NmeAIII	GCCGAG	1 cut(s)	819
NmuCI	GTSAC	2 cut(s)	313, 745
OliI	CACNNNNGTG	1 cut(s)	320
PaqCI	CACCTGC	1 cut(s)	394
PceI	AGGCCT	1 cut(s)	727
PfeI	GAWTC	3 cut(s)	35, 208, 731
PkrI	GCNGC	2 cut(s)	141, 520
Psp6I	CCWGG	1 cut(s)	489
PspEI	GGTNACC	1 cut(s)	745
PspGI	CCWGG	1 cut(s)	489
PspN4I	GGNNCC	4 cut(s)	15, 338, 536, 579
PstNI	CAGNNNCTG	1 cut(s)	815
PsuI	RGATCY	2 cut(s)	13, 460
RsaI	GTAC	1 cut(s)	425
RsaNI	GTAC	1 cut(s)	424
RseI	CAYNNNNRTG	4 cut(s)	320, 366, 435, 554
SaqAI	TTAA	2 cut(s)	176, 228
SatI	GCNGC	2 cut(s)	140, 519
Sau3AI	GATC	9 cut(s)	13, 28, 58, 133, 193, 460, 498, 505, 751
ScrFI	CCNGG	2 cut(s)	67, 491
SfaNI	GCATC	1 cut(s)	370
SmiMI	CAYNNNNRTG	4 cut(s)	320, 366, 435, 554
SmlI	CTYRAG	2 cut(s)	410, 843
SmoI	CTYRAG	2 cut(s)	410, 843
Sse9I	AATT	4 cut(s)	182, 307, 328, 466
SseBI	AGGCCT	1 cut(s)	727
SspMI	CTAG	1 cut(s)	785
StuI	AGGCCT	1 cut(s)	727
StyD4I	CCNGG	2 cut(s)	65, 489
StyI	CCWWGG	4 cut(s)	94, 378, 741, 784
TaaI	ACNGT	6 cut(s)	275, 368, 526, 553, 674, 688
TaqI	TCGA	1 cut(s)	206
TaqII	GACCGA	1 cut(s)	764
TasI	AATT	4 cut(s)	182, 307, 328, 466
TfiI	GAWTC	3 cut(s)	35, 208, 731
Tru1I	TTAA	2 cut(s)	176, 228
Tru9I	TTAA	2 cut(s)	176, 228
TscAI	CASTG	5 cut(s)	204, 280, 322, 531, 679
TseFI	GTSAC	2 cut(s)	313, 745
TseI	GCWGC	2 cut(s)	139, 518
Tsp45I	GTSAC	2 cut(s)	313, 745
TspRI	CASTG	5 cut(s)	204, 280, 322, 531, 679
XagI	CCTNNNNNAGG	1 cut(s)	98
XapI	RAATTY	1 cut(s)	307
XmaJI	CCTAGG	1 cut(s)	784
XspI	CTAG	1 cut(s)	785

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.