MD03G1189000.v1.1

Protein kinase domain

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Forward (+)
25952312 .. 25954240
1929 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1189000.v1.1.491

Sequence Viewer

Length: 888 bp
ATGATGCCGAGTGAAAACGAAGATCAGTCCGACAAAGAACCATTCATAGAAATCGACCCAACGGGCCGCTACGGCCGGTACAACGAGCTCCTAGGTTGCGGGGCTGTGAAAAAGGTGTACCGGGCTTTCGATCAAGAGGAGGGCATAGAGGTAGCATGGAACCAAGTGAAGCTACGTAACTTTACCAACGATCCTGCTATGATCGAGAGGCTCTACTCCGAGGTTCGGCTTCTGAGGTCGTTGACGAACAAGAACATCATCACTTTGTACAACGTGTGGCGGGACGCTGAGCATAACACTCTCAATTTTATTACTGAGGTTTGTACAAGCGGGAATTTGAGGGAGTACAGGAAGAAGCATAAGCATGTTTCGATGAAGGCCTTGAAGAAGTGGTCAAAACAGATCTTGGCAGGGTTGCGGTATTTGCATACTCATGAACCTTGTGTTATTCATAGAGATCTCAATTGCAGCAATGTCTTTATCAATGGGAATGTTGGCCAGGTGAAGATTGGTGATTTGGGATTGGCTGCTATAGTGGGGAAGAACCATTCAGCGCATTCAGTGTTAGGGACCCCAGAATTTATGGCACCAGAGCTGTATGAAGGAGATTACACTGAGATGGTGGACATTTACTCATTTGGTATGTGTGTGCTTGAGATGGTGACCTTGGAAATACCCTATAGTGAATGTGACAATGTTGCTAAAATATACAAGAAGGTATCCTCAGGAGTAAGACCCCAGGCCTTGGACAAAATCAAAGACCCGGAGGTGAGAGCGTTTGTTGACAAGTGCCTCACCCAGCCTAGAGCGAGACCTTCTGCCACTGAACTTCTCAAGGACGCGTTCTTTGATGAAATTGAAGACGACGATAATGATCAAGACGTTTGA

Protein Analysis

296

Amino Acids

33.73

Weight (kDa)

5.47

Isoelectric Point (pI)

37.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 28 - 283 4.7e-51 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 28 - 279 3.3e-37 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 586
AccB7I CCANNNNNTGG 1 cut(s) 745
AccII CGCG 1 cut(s) 842
AciI CCGC 5 cut(s) 67, 99, 280, 330, 418
AclWI GGATC 1 cut(s) 185
AcoI YGGCCR 2 cut(s) 73, 496
AcsI RAATTY 2 cut(s) 334, 578
AfaI GTAC 5 cut(s) 80, 119, 269, 325, 347
AfiI CCNNNNNNNGG 2 cut(s) 225, 745
AflIII ACRYGT 2 cut(s) 273, 840
AgsI TTSAA 2 cut(s) 385, 860
AjnI CCWGG 2 cut(s) 498, 738
AluBI AGCT 3 cut(s) 88, 172, 595
AluI AGCT 3 cut(s) 88, 172, 595
Alw21I GWGCWC 1 cut(s) 90
Alw26I GTCTC 1 cut(s) 805
AlwI GGATC 1 cut(s) 185
AoxI GGCC 5 cut(s) 64, 73, 378, 496, 741
ApeKI GCWGC 2 cut(s) 468, 527
ApoI RAATTY 2 cut(s) 334, 578
ArsI GACNNNNNNTTYG 2 cut(s) 830, 862
AspA2I CCTAGG 1 cut(s) 91
AspLEI GCGC 1 cut(s) 556
AspS9I GGNCC 2 cut(s) 64, 570
AsuC2I CCSGG 2 cut(s) 122, 764
AsuHPI GGTGA 5 cut(s) 514, 524, 673, 781, 787
AvaII GGWCC 1 cut(s) 570
AvrII CCTAGG 1 cut(s) 91
AxyI CCTNAGG 1 cut(s) 724
BalI TGGCCA 1 cut(s) 498
BanI GGYRCC 1 cut(s) 586
BanII GRGCYC 1 cut(s) 90
BbsI GAAGAC 1 cut(s) 867
Bbv12I GWGCWC 1 cut(s) 90
BbvI GCAGC 2 cut(s) 480, 514
BccI CCATC 2 cut(s) 613, 652
BceAI ACGGC 1 cut(s) 88
BciT130I CCWGG 2 cut(s) 500, 740
BciVI GTATCC 1 cut(s) 730
BclI TGATCA 1 cut(s) 874
BcnI CCSGG 2 cut(s) 122, 764
BcoDI GTCTC 1 cut(s) 805
BfaI CTAG 2 cut(s) 92, 804
BfmI CTRYAG 2 cut(s) 531, 679
BfuI GTATCC 1 cut(s) 730
BglI GCCNNNNNGGC 1 cut(s) 72
BglII AGATCT 2 cut(s) 402, 457
BisI GCNGC 3 cut(s) 67, 469, 528
BlnI CCTAGG 1 cut(s) 91
BlpI GCTNAGC 1 cut(s) 288
BlsI GCNGC 3 cut(s) 68, 470, 529
Bme1390I CCNGG 4 cut(s) 122, 500, 740, 764
Bme18I GGWCC 1 cut(s) 570
BmgT120I GGNCC 2 cut(s) 64, 570
BmiI GGNNCC 4 cut(s) 161, 571, 572, 588
BmrFI CCNGG 4 cut(s) 122, 500, 740, 764
BpiI GAAGAC 1 cut(s) 867
Bpu1102I GCTNAGC 1 cut(s) 288
BpuEI CTTGAG 2 cut(s) 674, 818
BpuMI CCSGG 2 cut(s) 122, 764
BsaAI YACGTR 1 cut(s) 176
BsaBI GATNNNNATC 1 cut(s) 873
BsaI GGTCTC 1 cut(s) 805
BsaJI CCNNGG 5 cut(s) 91, 219, 666, 738, 744
Bsc4I CCNNNNNNNGG 2 cut(s) 225, 745
Bse118I RCCGGY 1 cut(s) 75
Bse21I CCTNAGG 1 cut(s) 724
Bse3DI GCAATG 1 cut(s) 478
Bse8I GATNNNNATC 1 cut(s) 873
BseBI CCWGG 2 cut(s) 500, 740
BseDI CCNNGG 5 cut(s) 91, 219, 666, 738, 744
BseJI GATNNNNATC 1 cut(s) 873
BseLI CCNNNNNNNGG 2 cut(s) 225, 745
BseMI GCAATG 1 cut(s) 478
BseMII CTCAG 5 cut(s) 224, 279, 306, 606, 738
BseRI GAGGAG 1 cut(s) 152
BseX3I CGGCCG 1 cut(s) 73
BseXI GCAGC 2 cut(s) 480, 514
BseYI CCCAGC 1 cut(s) 798
Bsh1236I CGCG 1 cut(s) 842
Bsh1285I CGRYCG 1 cut(s) 76
BshFI GGCC 5 cut(s) 66, 75, 380, 498, 743
BshNI GGYRCC 1 cut(s) 586
BsiEI CGRYCG 1 cut(s) 76
BsiHKAI GWGCWC 1 cut(s) 90
BsiSI CCGG 3 cut(s) 76, 121, 764
BslFI GGGAC 2 cut(s) 296, 583
BslI CCNNNNNNNGG 2 cut(s) 225, 745
BsmAI GTCTC 1 cut(s) 805
BsmFI GGGAC 2 cut(s) 296, 583
BsmI GAATGC 1 cut(s) 556
BsnI GGCC 5 cut(s) 66, 75, 380, 498, 743
Bso31I GGTCTC 1 cut(s) 805
Bsp1286I GDGCHC 1 cut(s) 90
Bsp1407I TGTACA 2 cut(s) 267, 323
Bsp143I GATC 7 cut(s) 22, 130, 190, 201, 402, 457, 874
Bsp1720I GCTNAGC 1 cut(s) 288
BspACI CCGC 5 cut(s) 67, 99, 280, 330, 418
BspANI GGCC 5 cut(s) 66, 75, 380, 498, 743
BspCNI CTCAG 5 cut(s) 225, 280, 307, 607, 737
BspFNI CGCG 1 cut(s) 842
BspHI TCATGA 1 cut(s) 433
BspLI GGNNCC 4 cut(s) 161, 571, 572, 588
BspPI GGATC 1 cut(s) 185
BspT107I GGYRCC 1 cut(s) 586
BspTNI GGTCTC 1 cut(s) 805
BsrDI GCAATG 1 cut(s) 478
BsrFI RCCGGY 1 cut(s) 75
BsrGI TGTACA 2 cut(s) 267, 323
BssAI RCCGGY 1 cut(s) 75
BssECI CCNNGG 5 cut(s) 91, 219, 666, 738, 744
BssMI GATC 7 cut(s) 22, 130, 190, 201, 402, 457, 874
BssT1I CCWWGG 3 cut(s) 91, 666, 744
Bst2UI CCWGG 2 cut(s) 500, 740
BstAUI TGTACA 2 cut(s) 267, 323
BstBAI YACGTR 1 cut(s) 176
BstDEI CTNAG 5 cut(s) 233, 288, 315, 615, 724
BstEII GGTNACC 1 cut(s) 661
BstFNI CGCG 1 cut(s) 842
BstHHI GCGC 1 cut(s) 556
BstKTI GATC 7 cut(s) 25, 133, 193, 204, 405, 460, 877
BstMAI GTCTC 1 cut(s) 805
BstMBI GATC 7 cut(s) 22, 130, 190, 201, 402, 457, 874
BstMCI CGRYCG 1 cut(s) 76
BstMWI GCNNNNNNNGC 2 cut(s) 72, 424
BstNI CCWGG 2 cut(s) 500, 740
BstNSI RCATGY 1 cut(s) 368
BstPI GGTNACC 1 cut(s) 661
BstSCI CCNGG 4 cut(s) 120, 498, 738, 762
BstSFI CTRYAG 2 cut(s) 531, 679
BstSNI TACGTA 1 cut(s) 176
BstUI CGCG 1 cut(s) 842
BstV1I GCAGC 2 cut(s) 480, 514
BstV2I GAAGAC 1 cut(s) 867
BstX2I RGATCY 2 cut(s) 402, 457
BstYI RGATCY 2 cut(s) 402, 457
BstZI CGGCCG 1 cut(s) 73
Bsu36I CCTNAGG 1 cut(s) 724
BsuI GTATCC 1 cut(s) 730
BsuRI GGCC 5 cut(s) 66, 75, 380, 498, 743
BtsIMutI CAGTG 3 cut(s) 567, 612, 822
CciI TCATGA 1 cut(s) 433
CfoI GCGC 1 cut(s) 556
Cfr10I RCCGGY 1 cut(s) 75
Cfr13I GGNCC 2 cut(s) 64, 570
CseI GACGC 2 cut(s) 293, 848
Csp6I GTAC 5 cut(s) 79, 118, 268, 324, 346
CviAII CATG 3 cut(s) 156, 365, 434
CviQI GTAC 5 cut(s) 79, 118, 268, 324, 346
DdeI CTNAG 5 cut(s) 233, 288, 315, 615, 724
DpnI GATC 7 cut(s) 24, 132, 192, 203, 404, 459, 876
DpnII GATC 7 cut(s) 22, 130, 190, 201, 402, 457, 874
EaeI YGGCCR 2 cut(s) 73, 496
EagI CGGCCG 1 cut(s) 73
Ecl136II GAGCTC 1 cut(s) 88
EclXI CGGCCG 1 cut(s) 73
Eco105I TACGTA 1 cut(s) 176
Eco130I CCWWGG 3 cut(s) 91, 666, 744
Eco147I AGGCCT 2 cut(s) 380, 743
Eco24I GRGCYC 1 cut(s) 90
Eco31I GGTCTC 1 cut(s) 805
Eco47I GGWCC 1 cut(s) 570
Eco52I CGGCCG 1 cut(s) 73
Eco53kI GAGCTC 1 cut(s) 88
Eco81I CCTNAGG 1 cut(s) 724
Eco91I GGTNACC 1 cut(s) 661
EcoICRI GAGCTC 1 cut(s) 88
EcoO109I RGGNCCY 1 cut(s) 570
EcoO65I GGTNACC 1 cut(s) 661
EcoRII CCWGG 2 cut(s) 498, 738
EcoT14I CCWWGG 3 cut(s) 91, 666, 744
EcoT38I GRGCYC 1 cut(s) 90
ErhI CCWWGG 3 cut(s) 91, 666, 744
FaeI CATG 3 cut(s) 159, 368, 437
FaqI GGGAC 2 cut(s) 296, 583
FatI CATG 3 cut(s) 155, 364, 433
FauI CCCGC 3 cut(s) 92, 273, 323
FbaI TGATCA 1 cut(s) 874
Fnu4HI GCNGC 3 cut(s) 67, 469, 528
FriOI GRGCYC 1 cut(s) 90
Fsp4HI GCNGC 3 cut(s) 67, 469, 528
FspBI CTAG 2 cut(s) 92, 804
GlaI GCGC 1 cut(s) 555
GluI GCNGC 3 cut(s) 67, 469, 528
GsaI CCCAGC 1 cut(s) 802
HaeIII GGCC 5 cut(s) 66, 75, 380, 498, 743
HapII CCGG 3 cut(s) 76, 121, 764
HgaI GACGC 2 cut(s) 293, 848
HhaI GCGC 1 cut(s) 556
Hin1II CATG 3 cut(s) 159, 368, 437
Hin6I GCGC 1 cut(s) 554
HinP1I GCGC 1 cut(s) 554
HincII GTYRAC 2 cut(s) 243, 784
HindII GTYRAC 2 cut(s) 243, 784
HpaII CCGG 3 cut(s) 76, 121, 764
HphI GGTGA 5 cut(s) 514, 524, 673, 781, 787
Hpy166II GTNNAC 4 cut(s) 118, 243, 625, 784
Hpy188I TCNGA 3 cut(s) 31, 220, 234
Hpy188III TCNNGA 5 cut(s) 134, 205, 434, 726, 878
Hpy8I GTNNAC 4 cut(s) 118, 243, 625, 784
Hpy99I CGWCG 1 cut(s) 869
HpyAV CCTTC 4 cut(s) 370, 596, 709, 825
HpyCH4IV ACGT 3 cut(s) 175, 273, 882
HpyCH4V TGCA 2 cut(s) 427, 468
HpyF10VI GCNNNNNNNGC 2 cut(s) 72, 424
HpyF3I CTNAG 5 cut(s) 233, 288, 315, 615, 724
HpySE526I ACGT 3 cut(s) 175, 273, 882
Hsp92II CATG 3 cut(s) 159, 368, 437
HspAI GCGC 1 cut(s) 554
KflI GGGWCCC 1 cut(s) 570
Ksp22I TGATCA 1 cut(s) 874
Kzo9I GATC 7 cut(s) 22, 130, 190, 201, 402, 457, 874
LmnI GCTCC 1 cut(s) 93
Lsp1109I GCAGC 2 cut(s) 480, 514
MaeI CTAG 2 cut(s) 92, 804
MaeII ACGT 3 cut(s) 175, 273, 882
MaeIII GTNAC 3 cut(s) 176, 661, 689
MalI GATC 7 cut(s) 24, 132, 192, 203, 404, 459, 876
MboI GATC 7 cut(s) 22, 130, 190, 201, 402, 457, 874
MboII GAAGA 6 cut(s) 32, 364, 397, 517, 553, 872
MfeI CAATTG 1 cut(s) 463
MflI RGATCY 2 cut(s) 402, 457
MhlI GDGCHC 1 cut(s) 90
MlsI TGGCCA 1 cut(s) 498
MluCI AATT 5 cut(s) 304, 334, 463, 578, 855
MluI ACGCGT 1 cut(s) 840
MluNI TGGCCA 1 cut(s) 498
MmeI TCCRAC 1 cut(s) 54
Mox20I TGGCCA 1 cut(s) 498
MscI TGGCCA 1 cut(s) 498
MslI CAYNNNNRTG 3 cut(s) 363, 432, 617
Msp20I TGGCCA 1 cut(s) 498
MspI CCGG 3 cut(s) 76, 121, 764
MspR9I CCNGG 4 cut(s) 122, 500, 740, 764
MunI CAATTG 1 cut(s) 463
Mva1269I GAATGC 1 cut(s) 556
MvaI CCWGG 2 cut(s) 500, 740
MvnI CGCG 1 cut(s) 842
MwoI GCNNNNNNNGC 2 cut(s) 72, 424
NciI CCSGG 2 cut(s) 122, 764
NdeII GATC 7 cut(s) 22, 130, 190, 201, 402, 457, 874
NlaIII CATG 3 cut(s) 159, 368, 437
NlaIV GGNNCC 4 cut(s) 161, 571, 572, 588
NmeAIII GCCGAG 1 cut(s) 33
NmuCI GTSAC 2 cut(s) 661, 689
NspI RCATGY 1 cut(s) 368
PagI TCATGA 1 cut(s) 433
PceI AGGCCT 2 cut(s) 380, 743
PctI GAATGC 1 cut(s) 556
PflMI CCANNNNNTGG 1 cut(s) 745
PkrI GCNGC 3 cut(s) 68, 470, 529
Ppu21I YACGTR 1 cut(s) 176
PpuMI RGGWCCY 1 cut(s) 570
Psp124BI GAGCTC 1 cut(s) 90
Psp5II RGGWCCY 1 cut(s) 570
Psp6I CCWGG 2 cut(s) 498, 738
PspEI GGTNACC 1 cut(s) 661
PspFI CCCAGC 1 cut(s) 798
PspGI CCWGG 2 cut(s) 498, 738
PspN4I GGNNCC 4 cut(s) 161, 571, 572, 588
PspPI GGNCC 2 cut(s) 64, 570
PspPPI RGGWCCY 1 cut(s) 570
PsuI RGATCY 2 cut(s) 402, 457
RsaI GTAC 5 cut(s) 80, 119, 269, 325, 347
RsaNI GTAC 5 cut(s) 79, 118, 268, 324, 346
RseI CAYNNNNRTG 3 cut(s) 363, 432, 617
SacI GAGCTC 1 cut(s) 90
SatI GCNGC 3 cut(s) 67, 469, 528
Sau3AI GATC 7 cut(s) 22, 130, 190, 201, 402, 457, 874
Sau96I GGNCC 2 cut(s) 64, 570
ScrFI CCNGG 4 cut(s) 122, 500, 740, 764
SduI GDGCHC 1 cut(s) 90
SfcI CTRYAG 2 cut(s) 531, 679
SfiI GGCCNNNNNGGCC 1 cut(s) 72
SinI GGWCC 1 cut(s) 570
SmiMI CAYNNNNRTG 3 cut(s) 363, 432, 617
SmlI CTYRAG 2 cut(s) 653, 833
SmoI CTYRAG 2 cut(s) 653, 833
SnaBI TACGTA 1 cut(s) 176
Sse9I AATT 5 cut(s) 304, 334, 463, 578, 855
SseBI AGGCCT 2 cut(s) 380, 743
SsiI CCGC 5 cut(s) 67, 99, 280, 330, 418
SspMI CTAG 2 cut(s) 92, 804
SstI GAGCTC 1 cut(s) 90
StuI AGGCCT 2 cut(s) 380, 743
StyD4I CCNGG 4 cut(s) 120, 498, 738, 762
StyI CCWWGG 3 cut(s) 91, 666, 744
TaiI ACGT 3 cut(s) 178, 276, 885
TaqI TCGA 4 cut(s) 54, 129, 204, 371
TasI AATT 5 cut(s) 304, 334, 463, 578, 855
TatI WGTACW 3 cut(s) 267, 323, 345
TauI GCSGC 1 cut(s) 69
TscAI CASTG 3 cut(s) 567, 619, 829
TseFI GTSAC 2 cut(s) 661, 689
TseI GCWGC 2 cut(s) 468, 527
Tsp45I GTSAC 2 cut(s) 661, 689
TspDTI ATGAA 6 cut(s) 34, 389, 440, 450, 615, 867
TspRI CASTG 3 cut(s) 567, 619, 829
Van91I CCANNNNNTGG 1 cut(s) 745
VpaK11BI GGWCC 1 cut(s) 570
XapI RAATTY 2 cut(s) 334, 578
XceI RCATGY 1 cut(s) 368
XcmI CCANNNNNNNNNTGG 1 cut(s) 506
XmaJI CCTAGG 1 cut(s) 91
XspI CTAG 2 cut(s) 92, 804
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.