Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001260

Physical Location & Seq

Genomic Coordinates Reverse (-)

37164035 .. 37164549

Gene Structure 515 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034135

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGCTCTGCTTCTGATAGCTCCACGGTATATCAGATTGGTGAAGATTGGTGACTTGGGACTGGCTGCTATAGTAGGGAAGACTCACTCAGCTCATTCAGTGCTAGGCACACCAGAATTTATGGCACCGGAGCTTTATGAAGAGCATTATACTGAAATGGTGGACATATACTCATTTGGAATGTGTGTACTAGAGATGGTGACCTTGGAAATGTCCTATGGCGAATGCGACAATATTGCCAAAATATACAAGAAGGTAACCTCCGGGGTCAGACCTCAGGCCTTGAACAAGATCAAGGACCCGGAGGTGAGGGCATTTGTCGAGAGGTGCCTTGCACAACCTAGGGCGAGACCCTCTGCAACCGAACTCCTAAAGGACCCGTTCTTTGATGAGGTTGATGACGACGACGATGACGAAAATAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

142

Amino Acids

15.87

Weight (kDa)

4.68

Isoelectric Point (pI)

33.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	12 - 125	1.1e-12	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	14 - 129	7e-19	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001260)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55560
fragaria_vesca	FvH4_3g22150 FvH4_6g41240
malus_domestica	MD03G1189000.v1.1 MD09G1121400.v1.1 MD11G1205200.v1.1 MD17G1112400.v1.1
prunus_persica	Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.3G202300_v2.0.a1 Prupe.4G232100_v2.0.a1 Prupe.4G232100_v2.0.a1
pyrus_communis	pycom03g14190 pycom03g14210 pycom09g04580 pycom11g17800 pycom17g10410
rosa_chinensis	RchiOBHm_Chr2g0156791 RchiOBHm_Chr5g0038001 RchiOBHm_Chr5g0038041 RchiOBHm_Chr5g0042541
rosa_laevigata	RLG00000020942 RLG00000034135
rosa_multiflora	Rmu_co8331393.1_g000001 Rmu_co8390513.1_g000001 Rmu_sc0002670.1_g000011 Rmu_sc0008149.1_g000008 Rmu_sc0008278.1_g000004
rosa_roxburghii	Rroxscaffold_1G00038120 Rroxscaffold_1G00042890 Rroxscaffold_2G00092720
rosa_rugosa	Rorug02G0456200 Rorug05G0170100 Rorug05G0201300 Rorug05G0201400
rosa_samantha	Rh2AG521800 Rh2BG535200 Rh2CG506700 Rh2DG544200 Rh5BG261300 Rh5BG261600 Rh5BG291700 Rh5CG293600 Rh5CG323900 Rh5DG270500 Rh5DG270600 Rh5DG301500
rosa_wichuraiana	Rw2G043080 Rw5G023930 Rw5G024110 Rw5G024140 Rw5G026670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	124, 327
AcsI	RAATTY	1 cut(s)	116
AfaI	GTAC	1 cut(s)	189
AgsI	TTSAA	1 cut(s)	286
AluBI	AGCT	3 cut(s)	20, 92, 133
AluI	AGCT	3 cut(s)	20, 92, 133
Alw26I	GTCTC	1 cut(s)	343
AoxI	GGCC	1 cut(s)	279
ApeKI	GCWGC	1 cut(s)	65
ApoI	RAATTY	1 cut(s)	116
ArsI	GACNNNNNNTTYG	2 cut(s)	368, 400
AspA2I	CCTAGG	1 cut(s)	341
AspS9I	GGNCC	2 cut(s)	298, 376
AsuC2I	CCSGG	2 cut(s)	265, 302
AsuHPI	GGTGA	4 cut(s)	52, 62, 211, 319
AvaII	GGWCC	2 cut(s)	298, 376
AvrII	CCTAGG	1 cut(s)	341
AxyI	CCTNAGG	1 cut(s)	276
BanI	GGYRCC	2 cut(s)	124, 327
BbsI	GAAGAC	1 cut(s)	86
BbvI	GCAGC	1 cut(s)	52
BccI	CCATC	1 cut(s)	190
BcgI	CGANNNNNNTGC	2 cut(s)	218, 252
BcnI	CCSGG	2 cut(s)	265, 302
BcoDI	GTCTC	1 cut(s)	343
BfaI	CTAG	3 cut(s)	104, 191, 342
BfmI	CTRYAG	1 cut(s)	69
BisI	GCNGC	1 cut(s)	66
BlnI	CCTAGG	1 cut(s)	341
BlsI	GCNGC	1 cut(s)	67
Bme1390I	CCNGG	2 cut(s)	265, 302
Bme18I	GGWCC	2 cut(s)	298, 376
BmgT120I	GGNCC	2 cut(s)	298, 376
BmiI	GGNNCC	4 cut(s)	126, 300, 329, 378
BmrFI	CCNGG	2 cut(s)	265, 302
BpiI	GAAGAC	1 cut(s)	86
BpuMI	CCSGG	2 cut(s)	265, 302
BsaI	GGTCTC	1 cut(s)	343
BsaJI	CCNNGG	4 cut(s)	23, 204, 264, 341
BsaWI	WCCGGW	1 cut(s)	127
Bse1I	ACTGG	1 cut(s)	66
Bse21I	CCTNAGG	1 cut(s)	276
BseDI	CCNNGG	4 cut(s)	23, 204, 264, 341
BseMII	CTCAG	2 cut(s)	102, 290
BseNI	ACTGG	1 cut(s)	66
BseXI	GCAGC	1 cut(s)	52
BshFI	GGCC	1 cut(s)	281
BshNI	GGYRCC	2 cut(s)	124, 327
BsiSI	CCGG	3 cut(s)	128, 264, 302
BslFI	GGGAC	1 cut(s)	72
BsmAI	GTCTC	1 cut(s)	343
BsmFI	GGGAC	1 cut(s)	72
BsmI	GAATGC	1 cut(s)	230
BsnI	GGCC	1 cut(s)	281
Bso31I	GGTCTC	1 cut(s)	343
Bsp143I	GATC	1 cut(s)	291
BspANI	GGCC	1 cut(s)	281
BspCNI	CTCAG	2 cut(s)	101, 289
BspLI	GGNNCC	4 cut(s)	126, 300, 329, 378
BspQI	GCTCTTC	1 cut(s)	135
BspT107I	GGYRCC	2 cut(s)	124, 327
BspTNI	GGTCTC	1 cut(s)	343
BsrI	ACTGG	1 cut(s)	66
BssECI	CCNNGG	4 cut(s)	23, 204, 264, 341
BssMI	GATC	1 cut(s)	291
BssT1I	CCWWGG	2 cut(s)	204, 341
Bst4CI	ACNGT	1 cut(s)	27
Bst6I	CTCTTC	1 cut(s)	135
BstDEI	CTNAG	2 cut(s)	88, 276
BstDSI	CCRYGG	1 cut(s)	23
BstEII	GGTNACC	2 cut(s)	199, 256
BstKTI	GATC	1 cut(s)	294
BstMAI	GTCTC	1 cut(s)	343
BstMBI	GATC	1 cut(s)	291
BstPI	GGTNACC	2 cut(s)	199, 256
BstSCI	CCNGG	2 cut(s)	263, 300
BstSFI	CTRYAG	1 cut(s)	69
BstV1I	GCAGC	1 cut(s)	52
BstV2I	GAAGAC	1 cut(s)	86
Bsu36I	CCTNAGG	1 cut(s)	276
BsuRI	GGCC	1 cut(s)	281
BtgI	CCRYGG	1 cut(s)	23
BtsIMutI	CAGTG	1 cut(s)	105
Cfr13I	GGNCC	2 cut(s)	298, 376
Csp6I	GTAC	1 cut(s)	188
CviJI	RGCY	6 cut(s)	5, 20, 65, 92, 133, 281
CviKI_1	RGCY	6 cut(s)	5, 20, 65, 92, 133, 281
CviQI	GTAC	1 cut(s)	188
DdeI	CTNAG	2 cut(s)	88, 276
DpnI	GATC	1 cut(s)	293
DpnII	GATC	1 cut(s)	291
Eam1104I	CTCTTC	1 cut(s)	135
EarI	CTCTTC	1 cut(s)	135
Eco130I	CCWWGG	2 cut(s)	204, 341
Eco147I	AGGCCT	1 cut(s)	281
Eco31I	GGTCTC	1 cut(s)	343
Eco47I	GGWCC	2 cut(s)	298, 376
Eco81I	CCTNAGG	1 cut(s)	276
Eco91I	GGTNACC	2 cut(s)	199, 256
EcoO109I	RGGNCCY	2 cut(s)	298, 376
EcoO65I	GGTNACC	2 cut(s)	199, 256
EcoT14I	CCWWGG	2 cut(s)	204, 341
ErhI	CCWWGG	2 cut(s)	204, 341
FaiI	YATR	9 cut(s)	30, 71, 122, 138, 150, 167, 169, 219, 247
FaqI	GGGAC	1 cut(s)	72
Fnu4HI	GCNGC	1 cut(s)	66
Fsp4HI	GCNGC	1 cut(s)	66
FspBI	CTAG	3 cut(s)	104, 191, 342
GluI	GCNGC	1 cut(s)	66
HaeIII	GGCC	1 cut(s)	281
HapII	CCGG	3 cut(s)	128, 264, 302
HinfI	GANTC	1 cut(s)	82
HpaII	CCGG	3 cut(s)	128, 264, 302
HphI	GGTGA	4 cut(s)	52, 62, 211, 319
Hpy166II	GTNNAC	2 cut(s)	163, 188
Hpy188I	TCNGA	3 cut(s)	15, 35, 272
Hpy188III	TCNNGA	1 cut(s)	322
Hpy8I	GTNNAC	2 cut(s)	163, 188
Hpy99I	CGWCG	2 cut(s)	407, 410
HpyAV	CCTTC	1 cut(s)	247
HpyCH4III	ACNGT	1 cut(s)	27
HpyCH4V	TGCA	2 cut(s)	335, 359
HpyF3I	CTNAG	2 cut(s)	88, 276
Kzo9I	GATC	1 cut(s)	291
LguI	GCTCTTC	1 cut(s)	135
LmnI	GCTCC	2 cut(s)	25, 130
LpnPI	CCDG	6 cut(s)	47, 126, 141, 263, 277, 315
Lsp1109I	GCAGC	1 cut(s)	52
MaeI	CTAG	3 cut(s)	104, 191, 342
MaeIII	GTNAC	3 cut(s)	50, 199, 256
MalI	GATC	1 cut(s)	293
MboI	GATC	1 cut(s)	291
MboII	GAAGA	3 cut(s)	55, 91, 152
MluCI	AATT	2 cut(s)	116, 421
MlyI	GAGTC	1 cut(s)	76
MnlI	CCTC	7 cut(s)	271, 285, 298, 303, 318, 364, 385
MseI	TTAA	1 cut(s)	424
MspI	CCGG	3 cut(s)	128, 264, 302
MspR9I	CCNGG	2 cut(s)	265, 302
Mva1269I	GAATGC	1 cut(s)	230
NciI	CCSGG	2 cut(s)	265, 302
NdeII	GATC	1 cut(s)	291
NlaIV	GGNNCC	4 cut(s)	126, 300, 329, 378
NmuCI	GTSAC	2 cut(s)	50, 199
PceI	AGGCCT	1 cut(s)	281
PciSI	GCTCTTC	1 cut(s)	135
PcsI	WCGNNNNNNNCGW	1 cut(s)	411
PctI	GAATGC	1 cut(s)	230
PkrI	GCNGC	1 cut(s)	67
PleI	GAGTC	1 cut(s)	76
PpsI	GAGTC	1 cut(s)	76
PpuMI	RGGWCCY	2 cut(s)	298, 376
Psp5II	RGGWCCY	2 cut(s)	298, 376
PspEI	GGTNACC	2 cut(s)	199, 256
PspN4I	GGNNCC	4 cut(s)	126, 300, 329, 378
PspPI	GGNCC	2 cut(s)	298, 376
PspPPI	RGGWCCY	2 cut(s)	298, 376
RsaI	GTAC	1 cut(s)	189
RsaNI	GTAC	1 cut(s)	188
SapI	GCTCTTC	1 cut(s)	135
SaqAI	TTAA	1 cut(s)	424
SatI	GCNGC	1 cut(s)	66
Sau3AI	GATC	1 cut(s)	291
Sau96I	GGNCC	2 cut(s)	298, 376
SchI	GAGTC	1 cut(s)	76
ScrFI	CCNGG	2 cut(s)	265, 302
SfcI	CTRYAG	1 cut(s)	69
SinI	GGWCC	2 cut(s)	298, 376
Sse9I	AATT	2 cut(s)	116, 421
SseBI	AGGCCT	1 cut(s)	281
SspI	AATATT	1 cut(s)	235
SspMI	CTAG	3 cut(s)	104, 191, 342
StuI	AGGCCT	1 cut(s)	281
StyD4I	CCNGG	2 cut(s)	263, 300
StyI	CCWWGG	2 cut(s)	204, 341
TaaI	ACNGT	1 cut(s)	27
TaqI	TCGA	1 cut(s)	321
TasI	AATT	2 cut(s)	116, 421
TatI	WGTACW	1 cut(s)	187
Tru1I	TTAA	1 cut(s)	424
Tru9I	TTAA	1 cut(s)	424
TscAI	CASTG	1 cut(s)	105
TseFI	GTSAC	2 cut(s)	50, 199
TseI	GCWGC	1 cut(s)	65
Tsp45I	GTSAC	2 cut(s)	50, 199
TspDTI	ATGAA	1 cut(s)	153
TspRI	CASTG	1 cut(s)	105
VpaK11BI	GGWCC	2 cut(s)	298, 376
XapI	RAATTY	1 cut(s)	116
XmaJI	CCTAGG	1 cut(s)	341
XspI	CTAG	3 cut(s)	104, 191, 342

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.