Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002242

Physical Location & Seq

Genomic Coordinates Reverse (-)

23154965 .. 23161826

Gene Structure 6862 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G57160.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3660 bp

ATGACGGAGGAGATCAAATTCAGCGTACTGGTATCTCTCTTTAACTGGATTCAAAAAAGCAAAACCTCATCTCAGAAACGATCCAAATTCCGCAAGTTTCTCGACACTTACTGCAAACCCTCCGACTACTTCGTCGCCGTCCGTTTAATCATTCCGTCGCTTGATCGAGAACGAGGTAGCTACGGCCTTAAAGAGTCAGTGCTCGCCACGTGTCTGATCGACGCACTTGGTATCTCGCGTGATGCTCCTGATGCTGTTCGTCTTCTCAATTGGCGTAAAGGAGGAACTGCTAAAGCTGGAGCCAATGCTGGAAACTTCTCCTTAATTGCTGCTGAGGTATTGCAACGTAGACAAGGAATGGCTTCTGGCGGTTTGACTATTAAGGAATTGAATGATTTGCTTGATCGTTTGGCTTCAAGTGAGAACAGAGCGGAGAAAACTTTGGTTCTTTCTACATTGATTCAGAAGACAAATGCTCAGGAGATGAAGTGGGTCATTAGGATTATTCTAAAAGATTTGAAACTGGGAATGAGTGAGAAGAGCATTTTTCAGGAGTTCCATCCAGATGCTGAGGACTTGTTTAATGTCACATGTGATTTGAAACTAGTCTGTGAAAAGTTGAGGGATCGACACCAACGGCACAAGCGCCAGGATATAGAGGTTGGAAAAGCCGTACGACCCCAGTTAGCTATGCGTATTGGTGACGTAAATGCTGCTTGGAAGAAGCTGCATGGGAAAGATGTAGTTGCTGAATGCAAATTTGATGGGGATCGCATACAAATACACAAAAATGGGACTGACATACATTACTTCTCTAGGAACTTCCTTGACCATTCTGAATACGCACATGCCATGTCGGATCTTATTGTACAAAATATATTGGTGGACAAGTGTATCCTTGATGGTGAAATGTTGGTCTGGGATACATCTCTGAATCGGTTTGCTGAGTTTGGTTCGAATCAGGAAATAGCCAAGGCAGCAAGGGAGGGTCTTGACAGCCATAAACAGTTGTGTTATGTTGCCTTTGATGTTCTTTATGTTGGCGATACTAGCGTCATCCACCAGAGTTTGAAGGAACGGCATGAACTGCTGAAGAAAGTGGTCAAACCTTTAAAAGGTCGGCTCGAAGTTTTAGTACCTGAAGGTGGTCTCAATGTTCACCGCCCTTCAGGGGAACCTAGTTGGTCTATTGTTGTTCATGCTGCTGCTGATGTTGAGCGATTTTTCAAAGAAACAGTTGAAAACAGAGATGAAGGAATTGTGCTTAAAGACCTGGAATCAAAATGGGAACCTGGAGATCGTAGTGGCAAGTGGATGAAATTGAAGCCTGAATATATCCGGGCTGGTGCTGACCTGGATGTTCTTATAATAGGAGGATACTATGGCTCCGGACGTCGTGGAGGAGAGGTAGCACAGTTTCTTGTAGCCTTGGCTGACCGGGCAGAGGCAAATGTATATCCCAGGCGATTTATGTCCTTTTGTAGAGTTGGCACTGGGCTTTCTGATGATGAGCTTAACACTGTTGTAAGCAAACTGAAGCCTTATTTCAGAAAAAATGAGCACCCAAAGAAGGCTCCACCAAGCTTCTATCAGGTCACTAATCACTCCAAAGAGAGACCGGATGTTTGGATTGACAGCCCGGAAAAATCAATAATACTTTCAATCACTAGTGATATCAGGACGATAAGGTCTGAGGTGTTTGTTGCACCTTACAGTCTGAGGTTTCCTCGTATTGATAAAGTAAGATATGACAAGCCTTGGCATGAATGTCTTGATGTGCAGGCTTTTGTGGAATTGGTGAATTCGAGTAACGGCACCACACAGAAACAGAAGGAGTCTGAAAGCACACAGGACAATCCGAAAGTCAATAAATCCTCCAAGAGAGGAGAGAAAAAGAATGTCTCTCTTGTTCCCTCTCAGTTTATTCAAACTGATGTATCGGATATCAAGGGCAAGACCTCAATCTTCTCAAATATGATATTTTATTTTGTTAACGTGCCTCGGTCCCATTCTCTTGAGACATTCCACAAAATGGTGGTTGAAAACGGAGGGAAGTTTTCAATGAACTTAAACAACTCAGTGACTCATTGCATTGCAGCAGAAAGCAGTGGAATAAAGTATCAGGCAGCAAAGCGTCAGCGAGATGTCATCCACTTTTCATGGGTCTTAGATTGTTGTTCACGAAATAAGATGCTTCCTTTGCTGCCAAAGTACTTCCTCCACCTCACTGATGCTTCAAGGACAAAATTACAGGATGATATTGATGAATTTTCTGATTCTTATTACTGGGATTTAGACCTTGAAGGTCTCAAACAGGTCTTAAGCAATGCCAAGCAATCTGAAGATTCAAAATCTATTGACTACTACAAGAAAAAGTTATGTCCTGAAAAAAGATGGTCCTGCCTCTTAAGCTGCTGTGTTTACTTTTACCCGTATAGTCAAACATTGAGCACTGAAGAGGAAGCCCTATTGGGAATTATGGCTAAGAGATTAATGCTTGAAGTCTTAATGGCTGGTGGTAAAGTTAGCAATAATCTTGCTCATGCGTCGCACCTTGTAGTTCTTGCTATGGCAGAAGAACCTTTGGATTTTACTTTAGTTTCGAAAAGTTTCAGCGAAATGGAGAAACGTCTTTTGCTGAAGAAAAGGCTTCATGTTGTTAGCTCGCACTGGTTAGAGGAAAGCTTGCAAAGAGAGGAAAAACTGTGCGAGGATGTCTACACTCTGAGGCCTAAGTATATGGAAGAGTCTGATACTGAAGAATCAGATAAATCCGAACATGATACAACGGAAGTAGCTTCCCAAGGTAGTGCTCAAACCAAAGAGCCAGCTTCCTCTAAAATTGCAATTACGAGTTCAAGAGGACGGTCAAATACTCGAGCTGTTAAAAGGGGAAGGTCTTCTACAAACTCACTGCAACGAGTACAGAGACGCAGAGGCAAGCAGCCGTCTAAGATAAGCGGAGATGAAACAGAGGAAAGTGATGCTTCTGAAGAAAAGGTTTCAACAAGACTCAGTGATATAGCAGAAGAGACGGATTCGTTTGGTGAGGCTCAAAGAAACTCTAGCAGAGGAAAATGTGCGAAGAGAGGAAAGTCTCGTGTGGGACAAACCCAAAGAGTACAGAGATCACGCAGAGGCAAGAAAGCTGCGAAGATAGGAGGAGATGAGTCTGATGAAAATGATGAATTAGATGGCAATAACAATGTGTCAGCAGATGCGGAAGAGGGTAATGCAGCTGGTAGATCTGTGGAAAACGAAGAAACCCGAGAGCCTGACATAGCGAAGTACACAGAATCACAGCAAAGAGACAACACAGTAGCAGTTGAAGAGGCCTTACAAGATTCTAGAAATGCAAAGACGGAGATGGATATGAAAGAGAAGTTACAAATCCATGAGGATCCACTACAAGCTATGTTAATGAAAATGTTCCCTATTCCCAGTCAAAAAACCACAGAGACATCAAACCGAACCACTGGGGAATATAGAAAGGCTAATGTTTCTGGTGAATGTGAGTCTTCAGAGAAAAGAAAACTCGACGCTGAGACTGATAATACATCTGTGAACGCAGGCGCAGAATCAGACGTAGTTCCTCCTCTAGTGAAGAAAAAGAAAGTCAGCTACCGGGATGTTGCCGGAGAACTGCTCAAAGACTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000726 GO:0003674 GO:0003824 GO:0003909 GO:0003910 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005911 GO:0006139 GO:0006259 GO:0006266 GO:0006281 GO:0006289 GO:0006297 GO:0006302 GO:0006303 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009314 GO:0009506 GO:0009628 GO:0009987 GO:0010165 GO:0010212 GO:0016874 GO:0016886 GO:0030054 GO:0032807 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048046 GO:0050896 GO:0051103 GO:0051716 GO:0055044 GO:0071704 GO:0090304 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03450 map03450

Pfam Domains

Protein Families

BRCT_2 DNA_ligase_A_C DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_IV

Protein Analysis

1219

Amino Acids

137.85

Weight (kDa)

8.24

Isoelectric Point (pI)

45.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_ligase_A_M	PF01068	2 - 108	3.1e-17	ATP dependent DNA ligase domain
DNA_ligase_A_C	PF04679	132 - 251	1.3e-09	ATP dependent DNA ligase C terminal region
BRCT	PF00533	319 - 391	6.9e-08	BRCA1 C Terminus (BRCT) domain
BRCT_2	PF16589	321 - 400	6.3e-13	BRCT domain
PTCB-BRCT	PF12738	336 - 378	5.9e-09	twin BRCT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0002242)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57160 AT5G57160
fragaria_vesca	FvH4_4g07160
malus_domestica	MD16G1247900.v1.1
prunus_persica	Prupe.1G074600_v2.0.a1 Prupe.1G074600_v2.0.a1
pyrus_communis	pycom12g16110 pycom12g16210 pycom16g20800
rosa_chinensis	RchiOBHm_Chr0c22g0500591 RchiOBHm_Chr4g0399311 RchiOBHm_Chr5g0052491 RchiOBHm_Chr7g0206661
rosa_laevigata	RLG00000009274 RLG00000012027 RLG00000013478 RLG00000013735 RLG00000034678
rosa_multiflora	Rmu_co8101330.1_g000001 Rmu_co8329359.1_g000001 Rmu_sc0000924.1_g000031 Rmu_sc0003135.1_g000008
rosa_roxburghii	Rroxscaffold_4G00283390 Rroxscaffold_4G00329320 Rroxscaffold_5G00344240
rosa_rugosa	Rorug04G0016500
rosa_samantha	Rh2AG218900 Rh2BG192100 Rh2BG230700 Rh2CG361900 Rh2DG225100 Rh3BG254200 Rh3DG357600 Rh4AG094200 Rh4AG102100 Rh4BG091600 Rh4CG102400 Rh4CG110300 Rh4DG086300 Rh7DG237100 Rh7DG335000 Rh7DG335200
rosa_wichuraiana	Rw4G007730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1367
AasI	GACNNNNNNGTC	2 cut(s)	131, 1687
AatII	GACGTC	1 cut(s)	1396
AccB1I	GGYRCC	1 cut(s)	1814
AccB7I	CCANNNNNTGG	1 cut(s)	2032
AccBSI	CCGCTC	1 cut(s)	431
AccI	GTMKAC	2 cut(s)	349, 2718
AccII	CGCG	1 cut(s)	238
AccIII	TCCGGA	1 cut(s)	1388
AciI	CCGC	6 cut(s)	91, 369, 431, 1162, 2961, 3221
AclWI	GGATC	6 cut(s)	75, 633, 777, 867, 3395, 3408
AcsI	RAATTY	5 cut(s)	17, 86, 758, 1801, 2267
AcvI	CACGTG	1 cut(s)	210
AcyI	GRCGYC	1 cut(s)	1393
AfaI	GTAC	8 cut(s)	27, 675, 870, 1137, 2213, 2925, 3123, 3290
AfiI	CCNNNNNNNGG	6 cut(s)	1115, 1145, 1171, 1444, 1570, 2032
AflII	CTTAAG	2 cut(s)	2320, 2407
AflIII	ACRYGT	2 cut(s)	209, 590
AhlI	ACTAGT	2 cut(s)	604, 1667
AjnI	CCWGG	5 cut(s)	648, 1272, 1291, 1353, 1460
Alw21I	GWGCWC	4 cut(s)	204, 1563, 2453, 2815
AlwI	GGATC	6 cut(s)	75, 633, 777, 867, 3395, 3408
AlwNI	CAGNNNCTG	1 cut(s)	569
Ama87I	CYCGRG	2 cut(s)	2877, 3267
Aor13HI	TCCGGA	1 cut(s)	1388
AoxI	GGCC	3 cut(s)	184, 2729, 3333
ApoI	RAATTY	5 cut(s)	17, 86, 758, 1801, 2267
ArsI	GACNNNNNNTTYG	2 cut(s)	1608, 1640
AseI	ATTAAT	1 cut(s)	2492
Asp700I	GAANNNNTTC	4 cut(s)	361, 2609, 2899, 3428
AspLEI	GCGC	2 cut(s)	648, 3575
AspS9I	GGNCC	2 cut(s)	2004, 2397
AsuC2I	CCSGG	4 cut(s)	1340, 1439, 1640, 3626
AsuHPI	GGTGA	6 cut(s)	713, 917, 1151, 1810, 3059, 3518
AsuII	TTCGAA	2 cut(s)	956, 2603
AvaI	CYCGRG	2 cut(s)	2877, 3267
AvaII	GGWCC	2 cut(s)	2004, 2397
BaeI	ACNNNNGTAYC	6 cut(s)	877, 910, 1038, 1071, 1920, 1953
BamHI	GGATCC	1 cut(s)	3400
BanI	GGYRCC	1 cut(s)	1814
BarI	GAAGNNNNNNTAC	6 cut(s)	1119, 1151, 2887, 2919, 3321, 3353
BauI	CACGAG	1 cut(s)	3099
BbrPI	CACGTG	1 cut(s)	210
BbsI	GAAGAC	4 cut(s)	254, 473, 2892, 3510
Bbv12I	GWGCWC	4 cut(s)	204, 1563, 2453, 2815
BbvCI	CCTCAGC	2 cut(s)	333, 570
BccI	CCATC	6 cut(s)	567, 758, 896, 2388, 3188, 3361
BceAI	ACGGC	7 cut(s)	122, 199, 653, 656, 1094, 1828, 2932
BcgI	CGANNNNNNTGC	2 cut(s)	82, 116
BciT130I	CCWGG	5 cut(s)	650, 1274, 1293, 1355, 1462
BciVI	GTATCC	3 cut(s)	905, 916, 1370
BcnI	CCSGG	4 cut(s)	1340, 1439, 1640, 3626
BcuI	ACTAGT	2 cut(s)	604, 1667
BfaI	CTAG	8 cut(s)	605, 816, 1050, 1179, 1668, 3066, 3348, 3599
BfoI	RGCGCY	1 cut(s)	649
BfrI	CTTAAG	2 cut(s)	2320, 2407
BfuI	GTATCC	3 cut(s)	905, 916, 1370
BglII	AGATCT	1 cut(s)	3245
BmcAI	AGTACT	1 cut(s)	2213
Bme1390I	CCNGG	9 cut(s)	650, 1274, 1293, 1340, 1355, 1439, 1462, 1640, 3626
Bme18I	GGWCC	2 cut(s)	2004, 2397
BmeT110I	CYCGRG	2 cut(s)	2877, 3267
BmgT120I	GGNCC	2 cut(s)	2004, 2397
BmiI	GGNNCC	8 cut(s)	301, 1176, 1290, 1387, 1575, 1816, 2006, 3402
BmrFI	CCNGG	9 cut(s)	650, 1274, 1293, 1340, 1355, 1439, 1462, 1640, 3626
BmrI	ACTGGG	6 cut(s)	533, 676, 1503, 2296, 3435, 3486
BmsI	GCATC	7 cut(s)	232, 241, 556, 2181, 2221, 2974, 3208
BmuI	ACTGGG	6 cut(s)	533, 676, 1503, 2296, 3435, 3486
BpiI	GAAGAC	4 cut(s)	254, 473, 2892, 3510
BplI	GAGNNNNNCTC	3 cut(s)	1711, 1743, 3630
BpmI	CTGGAG	2 cut(s)	318, 1314
Bpu10I	CCTNAGC	3 cut(s)	333, 477, 570
Bpu14I	TTCGAA	2 cut(s)	956, 2603
BpuEI	CTTGAG	1 cut(s)	2036
BpuMI	CCSGG	4 cut(s)	1340, 1439, 1640, 3626
BsaAI	YACGTR	1 cut(s)	210
BsaBI	GATNNNNATC	1 cut(s)	768
BsaHI	GRCGYC	1 cut(s)	1393
BsaI	GGTCTC	3 cut(s)	1154, 1609, 2312
BsaJI	CCNNGG	6 cut(s)	972, 1428, 1460, 1757, 2000, 2803
BsaWI	WCCGGW	2 cut(s)	1388, 1618
BsaXI	ACNNNNNCTCC	6 cut(s)	473, 503, 1370, 1392, 1400, 1422
Bsc4I	CCNNNNNNNGG	6 cut(s)	1115, 1145, 1171, 1444, 1570, 2032
Bse3DI	GCAATG	3 cut(s)	2086, 2091, 2332
Bse8I	GATNNNNATC	1 cut(s)	768
BseAI	TCCGGA	1 cut(s)	1388
BseBI	CCWGG	5 cut(s)	650, 1274, 1293, 1355, 1462
BseDI	CCNNGG	6 cut(s)	972, 1428, 1460, 1757, 2000, 2803
BseGI	GGATG	9 cut(s)	559, 1056, 1320, 1363, 1627, 2148, 2260, 2719, 3634
BseJI	GATNNNNATC	1 cut(s)	768
BseLI	CCNNNNNNNGG	6 cut(s)	1115, 1145, 1171, 1444, 1570, 2032
BseMI	GCAATG	3 cut(s)	2086, 2091, 2332
BseRI	GAGGAG	5 cut(s)	23, 1416, 1899, 3177, 3585
BsgI	GTGCAG	1 cut(s)	1799
Bsh1236I	CGCG	1 cut(s)	238
BshFI	GGCC	3 cut(s)	186, 2731, 3335
BshNI	GGYRCC	1 cut(s)	1814
BsiHKAI	GWGCWC	4 cut(s)	204, 1563, 2453, 2815
BsiHKCI	CYCGRG	2 cut(s)	2877, 3267
BsiSI	CCGG	7 cut(s)	1339, 1389, 1438, 1619, 1640, 3625, 3636
BsiWI	CGTACG	1 cut(s)	673
BslFI	GGGAC	3 cut(s)	808, 1990, 3120
BslI	CCNNNNNNNGG	6 cut(s)	1115, 1145, 1171, 1444, 1570, 2032
BsmBI	CGTCTC	2 cut(s)	2923, 3026
BsmFI	GGGAC	3 cut(s)	808, 1990, 3120
BsmI	GAATGC	1 cut(s)	758
BsnI	GGCC	3 cut(s)	186, 2731, 3335
Bso31I	GGTCTC	3 cut(s)	1154, 1609, 2312
BsoBI	CYCGRG	2 cut(s)	2877, 3267
Bsp119I	TTCGAA	2 cut(s)	956, 2603
Bsp1286I	GDGCHC	4 cut(s)	204, 1563, 2453, 2815
Bsp13I	TCCGGA	1 cut(s)	1388
Bsp1407I	TGTACA	1 cut(s)	868
BspACI	CCGC	6 cut(s)	91, 369, 431, 1162, 2961, 3221
BspANI	GGCC	3 cut(s)	186, 2731, 3335
BspEI	TCCGGA	1 cut(s)	1388
BspFNI	CGCG	1 cut(s)	238
BspLI	GGNNCC	8 cut(s)	301, 1176, 1290, 1387, 1575, 1816, 2006, 3402
BspPI	GGATC	6 cut(s)	75, 633, 777, 867, 3395, 3408
BspQI	GCTCTTC	1 cut(s)	533
BspT104I	TTCGAA	2 cut(s)	956, 2603
BspT107I	GGYRCC	1 cut(s)	1814
BspTI	CTTAAG	2 cut(s)	2320, 2407
BspTNI	GGTCTC	3 cut(s)	1154, 1609, 2312
BsrBI	CCGCTC	1 cut(s)	431
BsrDI	GCAATG	3 cut(s)	2086, 2091, 2332
BsrGI	TGTACA	1 cut(s)	868
BssECI	CCNNGG	6 cut(s)	972, 1428, 1460, 1757, 2000, 2803
BssNI	GRCGYC	1 cut(s)	1393
BssSI	CACGAG	1 cut(s)	3099
BssT1I	CCWWGG	4 cut(s)	972, 1428, 1757, 2803
Bst2BI	CACGAG	1 cut(s)	3099
Bst2UI	CCWGG	5 cut(s)	650, 1274, 1293, 1355, 1462
Bst4CI	ACNGT	8 cut(s)	1008, 1237, 1416, 1522, 1715, 2706, 2868, 3319
Bst6I	CTCTTC	7 cut(s)	533, 2451, 2739, 3024, 3080, 3219, 3324
BstACI	GRCGYC	1 cut(s)	1393
BstAFI	CTTAAG	2 cut(s)	2320, 2407
BstAPI	GCANNNNNTGC	1 cut(s)	1087
BstAUI	TGTACA	1 cut(s)	868
BstBAI	YACGTR	1 cut(s)	210
BstBI	TTCGAA	2 cut(s)	956, 2603
BstC8I	GCNNGC	7 cut(s)	204, 1782, 2666, 2687, 2829, 2942, 3571
BstENI	CCTNNNNNAGG	1 cut(s)	1113
BstF5I	GGATG	9 cut(s)	559, 1056, 1320, 1363, 1627, 2148, 2260, 2719, 3634
BstFNI	CGCG	1 cut(s)	238
BstH2I	RGCGCY	1 cut(s)	649
BstHHI	GCGC	2 cut(s)	648, 3575
BstMWI	GCNNNNNNNGC	7 cut(s)	251, 977, 1050, 1087, 1439, 2200, 2409
BstNI	CCWGG	5 cut(s)	650, 1274, 1293, 1355, 1462
BstNSI	RCATGY	2 cut(s)	594, 851
BstSCI	CCNGG	9 cut(s)	648, 1272, 1291, 1338, 1353, 1437, 1460, 1638, 3624
BstUI	CGCG	1 cut(s)	238
BstV2I	GAAGAC	4 cut(s)	254, 473, 2892, 3510
BstX2I	RGATCY	3 cut(s)	859, 3245, 3400
BstYI	RGATCY	3 cut(s)	859, 3245, 3400
BsuI	GTATCC	3 cut(s)	905, 916, 1370
BsuRI	GGCC	3 cut(s)	186, 2731, 3335
BtsCI	GGATG	9 cut(s)	559, 1056, 1320, 1363, 1627, 2148, 2260, 2719, 3634
BtsI	GCAGTG	2 cut(s)	2113, 2912
Cac8I	GCNNGC	7 cut(s)	204, 1782, 2666, 2687, 2829, 2942, 3571
CaiI	CAGNNNCTG	1 cut(s)	569
CfoI	GCGC	2 cut(s)	648, 3575
Cfr13I	GGNCC	2 cut(s)	2004, 2397
CseI	GACGC	6 cut(s)	230, 1042, 2123, 2535, 2940, 3548
Csp6I	GTAC	8 cut(s)	26, 674, 869, 1136, 2212, 2924, 3122, 3289
CviQI	GTAC	8 cut(s)	26, 674, 869, 1136, 2212, 2924, 3122, 3289
DraI	TTTAAA	1 cut(s)	1113
DrdI	GACNNNNNNGTC	2 cut(s)	131, 1687
DseDI	GACNNNNNNGTC	2 cut(s)	131, 1687
Eam1104I	CTCTTC	7 cut(s)	533, 2451, 2739, 3024, 3080, 3219, 3324
EarI	CTCTTC	7 cut(s)	533, 2451, 2739, 3024, 3080, 3219, 3324
Eco130I	CCWWGG	4 cut(s)	972, 1428, 1757, 2803
Eco147I	AGGCCT	2 cut(s)	2731, 3335
Eco31I	GGTCTC	3 cut(s)	1154, 1609, 2312
Eco32I	GATATC	2 cut(s)	1675, 1945
Eco47I	GGWCC	2 cut(s)	2004, 2397
Eco72I	CACGTG	1 cut(s)	210
Eco88I	CYCGRG	2 cut(s)	2877, 3267
EcoNI	CCTNNNNNAGG	1 cut(s)	1113
EcoRI	GAATTC	1 cut(s)	1801
EcoRII	CCWGG	5 cut(s)	648, 1272, 1291, 1353, 1460
EcoRV	GATATC	2 cut(s)	1675, 1945
EcoT14I	CCWWGG	4 cut(s)	972, 1428, 1757, 2803
ErhI	CCWWGG	4 cut(s)	972, 1428, 1757, 2803
Esp3I	CGTCTC	2 cut(s)	2923, 3026
FalI	AAGNNNNNCTT	2 cut(s)	2971, 3003
FaqI	GGGAC	3 cut(s)	808, 1990, 3120
FblI	GTMKAC	2 cut(s)	349, 2718
FokI	GGATG	9 cut(s)	546, 1043, 1327, 1370, 1634, 2135, 2267, 2726, 3641
FspBI	CTAG	8 cut(s)	605, 816, 1050, 1179, 1668, 3066, 3348, 3599
GlaI	GCGC	2 cut(s)	647, 3574
GsuI	CTGGAG	2 cut(s)	318, 1314
HaeII	RGCGCY	1 cut(s)	649
HaeIII	GGCC	3 cut(s)	186, 2731, 3335
HapII	CCGG	7 cut(s)	1339, 1389, 1438, 1619, 1640, 3625, 3636
HgaI	GACGC	6 cut(s)	230, 1042, 2123, 2535, 2940, 3548
HhaI	GCGC	2 cut(s)	648, 3575
Hin1I	GRCGYC	1 cut(s)	1393
Hin6I	GCGC	2 cut(s)	646, 3573
HinP1I	GCGC	2 cut(s)	646, 3573
HincII	GTYRAC	1 cut(s)	1993
HindII	GTYRAC	1 cut(s)	1993
HindIII	AAGCTT	2 cut(s)	1582, 2683
HpaI	GTTAAC	1 cut(s)	1993
HpaII	CCGG	7 cut(s)	1339, 1389, 1438, 1619, 1640, 3625, 3636
HphI	GGTGA	6 cut(s)	713, 917, 1151, 1810, 3059, 3518
Hpy166II	GTNNAC	9 cut(s)	350, 886, 1159, 1993, 2180, 2422, 2719, 3291, 3565
Hpy8I	GTNNAC	9 cut(s)	350, 886, 1159, 1993, 2180, 2422, 2719, 3291, 3565
Hpy99I	CGWCG	6 cut(s)	137, 160, 224, 1398, 2551, 3542
HpyAV	CCTTC	8 cut(s)	1066, 1136, 1176, 1247, 1564, 1825, 2297, 2889
HpyCH4III	ACNGT	8 cut(s)	1008, 1237, 1416, 1522, 1715, 2706, 2868, 3319
HpyCH4IV	ACGT	7 cut(s)	209, 346, 705, 1393, 1995, 2629, 3585
HpyF10VI	GCNNNNNNNGC	7 cut(s)	251, 977, 1050, 1087, 1439, 2200, 2409
HpySE526I	ACGT	7 cut(s)	209, 346, 705, 1393, 1995, 2629, 3585
Hsp92I	GRCGYC	1 cut(s)	1393
HspAI	GCGC	2 cut(s)	646, 3573
Kpn2I	TCCGGA	1 cut(s)	1388
KspAI	GTTAAC	1 cut(s)	1993
LguI	GCTCTTC	1 cut(s)	533
LmnI	GCTCC	4 cut(s)	250, 299, 1391, 1579
LweI	GCATC	7 cut(s)	232, 241, 556, 2181, 2221, 2974, 3208
MaeI	CTAG	8 cut(s)	605, 816, 1050, 1179, 1668, 3066, 3348, 3599
MaeII	ACGT	7 cut(s)	209, 346, 705, 1393, 1995, 2629, 3585
MaeIII	GTNAC	6 cut(s)	586, 701, 1594, 1808, 2080, 3384
MbiI	CCGCTC	1 cut(s)	431
MfeI	CAATTG	1 cut(s)	268
MflI	RGATCY	3 cut(s)	859, 3245, 3400
MhlI	GDGCHC	4 cut(s)	204, 1563, 2453, 2815
MlyI	GAGTC	7 cut(s)	203, 1844, 2077, 2756, 3006, 3179, 3524
MmeI	TCCRAC	3 cut(s)	147, 643, 837
MroI	TCCGGA	1 cut(s)	1388
MroXI	GAANNNNTTC	4 cut(s)	361, 2609, 2899, 3428
MslI	CAYNNNNRTG	2 cut(s)	564, 789
MspA1I	CMGCKG	1 cut(s)	3239
MspCI	CTTAAG	2 cut(s)	2320, 2407
MspI	CCGG	7 cut(s)	1339, 1389, 1438, 1619, 1640, 3625, 3636
MspR9I	CCNGG	9 cut(s)	650, 1274, 1293, 1340, 1355, 1439, 1462, 1640, 3626
MunI	CAATTG	1 cut(s)	268
Mva1269I	GAATGC	1 cut(s)	758
MvaI	CCWGG	5 cut(s)	650, 1274, 1293, 1355, 1462
MvnI	CGCG	1 cut(s)	238
MwoI	GCNNNNNNNGC	7 cut(s)	251, 977, 1050, 1087, 1439, 2200, 2409
NciI	CCSGG	4 cut(s)	1340, 1439, 1640, 3626
NlaIV	GGNNCC	8 cut(s)	301, 1176, 1290, 1387, 1575, 1816, 2006, 3402
NmuCI	GTSAC	4 cut(s)	586, 701, 1594, 2080
NspI	RCATGY	2 cut(s)	594, 851
NspV	TTCGAA	2 cut(s)	956, 2603
PaeR7I	CTCGAG	1 cut(s)	2877
PceI	AGGCCT	2 cut(s)	2731, 3335
PciI	ACATGT	1 cut(s)	590
PciSI	GCTCTTC	1 cut(s)	533
PctI	GAATGC	1 cut(s)	758
PdmI	GAANNNNTTC	4 cut(s)	361, 2609, 2899, 3428
Pfl23II	CGTACG	1 cut(s)	673
PflMI	CCANNNNNTGG	1 cut(s)	2032
PleI	GAGTC	7 cut(s)	202, 1843, 2077, 2755, 3006, 3178, 3523
PmaCI	CACGTG	1 cut(s)	210
PmlI	CACGTG	1 cut(s)	210
PpsI	GAGTC	7 cut(s)	202, 1843, 2077, 2755, 3006, 3178, 3523
Ppu21I	YACGTR	1 cut(s)	210
PscI	ACATGT	1 cut(s)	590
PshBI	ATTAAT	1 cut(s)	2492
PsiI	TTATAA	1 cut(s)	1367
Psp6I	CCWGG	5 cut(s)	648, 1272, 1291, 1353, 1460
PspCI	CACGTG	1 cut(s)	210
PspGI	CCWGG	5 cut(s)	648, 1272, 1291, 1353, 1460
PspLI	CGTACG	1 cut(s)	673
PspN4I	GGNNCC	8 cut(s)	301, 1176, 1290, 1387, 1575, 1816, 2006, 3402
PspPI	GGNCC	2 cut(s)	2004, 2397
PspXI	VCTCGAGB	1 cut(s)	2877
PstNI	CAGNNNCTG	1 cut(s)	569
PsuI	RGATCY	3 cut(s)	859, 3245, 3400
PvuII	CAGCTG	1 cut(s)	3239
RsaI	GTAC	8 cut(s)	27, 675, 870, 1137, 2213, 2925, 3123, 3290
RsaNI	GTAC	8 cut(s)	26, 674, 869, 1136, 2212, 2924, 3122, 3289
RseI	CAYNNNNRTG	2 cut(s)	564, 789
SapI	GCTCTTC	1 cut(s)	533
Sau96I	GGNCC	2 cut(s)	2004, 2397
ScaI	AGTACT	1 cut(s)	2213
SchI	GAGTC	7 cut(s)	203, 1844, 2077, 2756, 3006, 3179, 3524
ScrFI	CCNGG	9 cut(s)	650, 1274, 1293, 1340, 1355, 1439, 1462, 1640, 3626
SduI	GDGCHC	4 cut(s)	204, 1563, 2453, 2815
SfaNI	GCATC	7 cut(s)	232, 241, 556, 2181, 2221, 2974, 3208
Sfr274I	CTCGAG	1 cut(s)	2877
SfuI	TTCGAA	2 cut(s)	956, 2603
SinI	GGWCC	2 cut(s)	2004, 2397
SlaI	CTCGAG	1 cut(s)	2877
SmiMI	CAYNNNNRTG	2 cut(s)	564, 789
SmlI	CTYRAG	4 cut(s)	2015, 2320, 2407, 2877
SmoI	CTYRAG	4 cut(s)	2015, 2320, 2407, 2877
SpeI	ACTAGT	2 cut(s)	604, 1667
SseBI	AGGCCT	2 cut(s)	2731, 3335
SsiI	CCGC	6 cut(s)	91, 369, 431, 1162, 2961, 3221
SspMI	CTAG	8 cut(s)	605, 816, 1050, 1179, 1668, 3066, 3348, 3599
StuI	AGGCCT	2 cut(s)	2731, 3335
StyD4I	CCNGG	9 cut(s)	648, 1272, 1291, 1338, 1353, 1437, 1460, 1638, 3624
StyI	CCWWGG	4 cut(s)	972, 1428, 1757, 2803
TaaI	ACNGT	8 cut(s)	1008, 1237, 1416, 1522, 1715, 2706, 2868, 3319
TaiI	ACGT	7 cut(s)	212, 349, 708, 1396, 1998, 2632, 3588
TaqII	GACCGA	1 cut(s)	1992
TatI	WGTACW	5 cut(s)	868, 2211, 2923, 3121, 3288
TseFI	GTSAC	4 cut(s)	586, 701, 1594, 2080
Tsp45I	GTSAC	4 cut(s)	586, 701, 1594, 2080
TspGWI	ACGGA	7 cut(s)	20, 131, 144, 2061, 2804, 3050, 3377
Van91I	CCANNNNNTGG	1 cut(s)	2032
Vha464I	CTTAAG	2 cut(s)	2320, 2407
VpaK11BI	GGWCC	2 cut(s)	2004, 2397
VspI	ATTAAT	1 cut(s)	2492
XagI	CCTNNNNNAGG	1 cut(s)	1113
XapI	RAATTY	5 cut(s)	17, 86, 758, 1801, 2267
XbaI	TCTAGA	1 cut(s)	3347
XceI	RCATGY	2 cut(s)	594, 851
XhoI	CTCGAG	1 cut(s)	2877
XmiI	GTMKAC	2 cut(s)	349, 2718
XmnI	GAANNNNTTC	4 cut(s)	361, 2609, 2899, 3428
XspI	CTAG	8 cut(s)	605, 816, 1050, 1179, 1668, 3066, 3348, 3599
ZraI	GACGTC	1 cut(s)	1394
ZrmI	AGTACT	1 cut(s)	2213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.