Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000924.1

Orthogroup ID

OG0002242

Physical Location & Seq

Genomic Coordinates Forward (+)

85326 .. 88522

Gene Structure 3197 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000924.1_g000031.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

atggtgagaatctattcaaattgttatatgtttgagtgtttgagtcacctctcaattgaaggtgaagaaacctcccccctacagcgctccaagttccagaaattccttgacaacttctgcaaagcaagtgattgcttcagtgcaatccggctgattcttctaaacctcaatcaggagcgcggtagctatggccttaaggagtcggtgctggcaatttcgccctcgtcgccgccaaggttagttaaggtttttgccaattttctgtattattttgctgagtggatcttggttcattttcatgatcaagaaatggagattttgtatatcactgtttcttctgtttactgcataaacattgagattagattcacaattacgaaaagaatgggacttagttcaggtggactaatgattaaggagttgaatgacttgcttgatcgtttggcatccggtgaaaatagggcagagaagacttcaattctttctactttggtacagaagacaaatgcacaagaaatgaagtggatcgtcatgatcattcttaaagatctgaaattgggaattagtgaaaagagcatcttccatgaatttcatccggatgctgaagacttgtttaatgttacctgtgacttgaaattggtttgtgaaaagctgagggacagaagtcaacgacataaacgacaggacattgaagttggaaaagctgtgcgcccgcagctagctatgagagttggtgatgcaactggtgcatggaaaaagtttcatggaaaggaagttgttgttgagtgtaaattcgacggcgatcgcatccaaattcataagaatggaactgaagtacattacttctcaaggaattttcttgatcactctgaatatggacatgcaatgtcagacattattatacaaaatgttcaggctgataggtgtattcttgatggtgagatgttggtctgggacacatctctgaagcgttttgctgagtttggttcaaatcaagaaatagcaaaggcagcgagggatggacttgacagtgataaacagttgtgctgtatcctttttgtctcttgcctcgttcaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000726 GO:0003674 GO:0003824 GO:0003909 GO:0003910 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005911 GO:0006139 GO:0006259 GO:0006266 GO:0006281 GO:0006289 GO:0006297 GO:0006302 GO:0006303 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009314 GO:0009506 GO:0009628 GO:0009987 GO:0010165 GO:0010212 GO:0016874 GO:0016886 GO:0030054 GO:0032807 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048046 GO:0050896 GO:0051103 GO:0051716 GO:0055044 GO:0071704 GO:0090304 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03450 map03450

Pfam Domains

Protein Families

BRCT_2 DNA_ligase_A_C DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_IV

Protein Analysis

359

Amino Acids

41.22

Weight (kDa)

6.43

Isoelectric Point (pI)

43.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002242)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57160 AT5G57160
fragaria_vesca	FvH4_4g07160
malus_domestica	MD16G1247900.v1.1
prunus_persica	Prupe.1G074600_v2.0.a1 Prupe.1G074600_v2.0.a1
pyrus_communis	pycom12g16110 pycom12g16210 pycom16g20800
rosa_chinensis	RchiOBHm_Chr0c22g0500591 RchiOBHm_Chr4g0399311 RchiOBHm_Chr5g0052491 RchiOBHm_Chr7g0206661
rosa_laevigata	RLG00000009274 RLG00000012027 RLG00000013478 RLG00000013735 RLG00000034678
rosa_multiflora	Rmu_co8101330.1_g000001 Rmu_co8329359.1_g000001 Rmu_sc0000924.1_g000031 Rmu_sc0003135.1_g000008
rosa_roxburghii	Rroxscaffold_4G00283390 Rroxscaffold_4G00329320 Rroxscaffold_5G00344240
rosa_rugosa	Rorug04G0016500
rosa_samantha	Rh2AG218900 Rh2BG192100 Rh2BG230700 Rh2CG361900 Rh2DG225100 Rh3BG254200 Rh3DG357600 Rh4AG094200 Rh4AG102100 Rh4BG091600 Rh4CG102400 Rh4CG110300 Rh4DG086300 Rh7DG237100 Rh7DG335000 Rh7DG335200
rosa_wichuraiana	Rw4G007730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	180
AccIII	TCCGGA	1 cut(s)	595
AciI	CCGC	3 cut(s)	180, 230, 713
AclWI	GGATC	2 cut(s)	290, 533
AcsI	RAATTY	5 cut(s)	101, 587, 791, 813, 853
AcuI	CTGAAG	4 cut(s)	121, 624, 852, 986
AfaI	GTAC	2 cut(s)	495, 837
AfeI	AGCGCT	1 cut(s)	86
AfiI	CCNNNNNNNGG	1 cut(s)	172
AflII	CTTAAG	1 cut(s)	194
AgsI	TTSAA	8 cut(s)	18, 59, 424, 477, 634, 692, 990, 1076
AluBI	AGCT	5 cut(s)	186, 652, 704, 718, 722
AluI	AGCT	5 cut(s)	186, 652, 704, 718, 722
Alw26I	GTCTC	1 cut(s)	1066
AlwI	GGATC	2 cut(s)	290, 533
Aor13HI	TCCGGA	1 cut(s)	595
Aor51HI	AGCGCT	1 cut(s)	86
AoxI	GGCC	1 cut(s)	190
ApeKI	GCWGC	2 cut(s)	715, 1010
ApoI	RAATTY	5 cut(s)	101, 587, 791, 813, 853
AsiSI	GCGATCGC	1 cut(s)	805
Asp700I	GAANNNNTTC	1 cut(s)	13
AspLEI	GCGC	3 cut(s)	87, 180, 711
AsuHPI	GGTGA	6 cut(s)	16, 38, 74, 464, 746, 950
AsuNHI	GCTAGC	1 cut(s)	718
BbsI	GAAGAC	3 cut(s)	476, 506, 612
BbvCI	CCTCAGC	1 cut(s)	653
BbvI	GCAGC	2 cut(s)	727, 1022
BccI	CCATC	2 cut(s)	929, 1013
BceAI	ACGGC	1 cut(s)	814
BciVI	GTATCC	1 cut(s)	1061
BclI	TGATCA	3 cut(s)	301, 534, 862
BcoDI	GTCTC	1 cut(s)	1066
BfaI	CTAG	1 cut(s)	719
BfmI	CTRYAG	1 cut(s)	80
BfoI	RGCGCY	1 cut(s)	88
BfrI	CTTAAG	1 cut(s)	194
BfuI	GTATCC	1 cut(s)	1061
BglII	AGATCT	1 cut(s)	547
BisI	GCNGC	3 cut(s)	230, 716, 1011
BlsI	GCNGC	3 cut(s)	231, 717, 1012
BmsI	GCATC	5 cut(s)	455, 585, 589, 727, 816
BmtI	GCTAGC	1 cut(s)	722
BoxI	GACNNNNGTC	1 cut(s)	663
BpiI	GAAGAC	3 cut(s)	476, 506, 612
Bpu10I	CCTNAGC	1 cut(s)	653
BpuEI	CTTGAG	1 cut(s)	832
BsaJI	CCNNGG	1 cut(s)	233
BsaWI	WCCGGW	2 cut(s)	449, 595
BsaXI	ACNNNNNCTCC	2 cut(s)	305, 335
Bsc4I	CCNNNNNNNGG	1 cut(s)	172
Bse1I	ACTGG	1 cut(s)	748
Bse3DI	GCAATG	1 cut(s)	891
BseAI	TCCGGA	1 cut(s)	595
BseDI	CCNNGG	1 cut(s)	233
BseGI	GGATG	5 cut(s)	446, 592, 604, 807, 1024
BseLI	CCNNNNNNNGG	1 cut(s)	172
BseMI	GCAATG	1 cut(s)	891
BseMII	CTCAG	3 cut(s)	267, 644, 969
BseNI	ACTGG	1 cut(s)	748
BseXI	GCAGC	2 cut(s)	727, 1022
Bsh1236I	CGCG	1 cut(s)	180
Bsh1285I	CGRYCG	1 cut(s)	805
BshFI	GGCC	1 cut(s)	192
BsiEI	CGRYCG	1 cut(s)	805
BsiSI	CCGG	3 cut(s)	148, 450, 596
BslFI	GGGAC	3 cut(s)	402, 671, 968
BslI	CCNNNNNNNGG	1 cut(s)	172
BsmAI	GTCTC	1 cut(s)	1066
BsmFI	GGGAC	3 cut(s)	402, 671, 968
BsnI	GGCC	1 cut(s)	192
Bsp13I	TCCGGA	1 cut(s)	595
Bsp143I	GATC	8 cut(s)	282, 301, 436, 525, 534, 547, 802, 862
BspACI	CCGC	3 cut(s)	180, 230, 713
BspANI	GGCC	1 cut(s)	192
BspCNI	CTCAG	3 cut(s)	268, 645, 970
BspEI	TCCGGA	1 cut(s)	595
BspFNI	CGCG	1 cut(s)	180
BspHI	TCATGA	2 cut(s)	298, 531
BspOI	GCTAGC	1 cut(s)	722
BspPI	GGATC	2 cut(s)	290, 533
BspTI	CTTAAG	1 cut(s)	194
BsrDI	GCAATG	1 cut(s)	891
BsrI	ACTGG	1 cut(s)	748
BssECI	CCNNGG	1 cut(s)	233
BssMI	GATC	8 cut(s)	282, 301, 436, 525, 534, 547, 802, 862
BssT1I	CCWWGG	1 cut(s)	233
Bst4CI	ACNGT	3 cut(s)	331, 1031, 1041
BstAFI	CTTAAG	1 cut(s)	194
BstAPI	GCANNNNNTGC	1 cut(s)	746
BstC8I	GCNNGC	3 cut(s)	210, 713, 720
BstDEI	CTNAG	4 cut(s)	276, 392, 653, 978
BstENI	CCTNNNNNAGG	1 cut(s)	170
BstF5I	GGATG	5 cut(s)	446, 592, 604, 807, 1024
BstFNI	CGCG	1 cut(s)	180
BstH2I	RGCGCY	1 cut(s)	88
BstHHI	GCGC	3 cut(s)	87, 180, 711
BstKTI	GATC	8 cut(s)	285, 304, 439, 528, 537, 550, 805, 865
BstMAI	GTCTC	1 cut(s)	1066
BstMBI	GATC	8 cut(s)	282, 301, 436, 525, 534, 547, 802, 862
BstMCI	CGRYCG	1 cut(s)	805
BstMWI	GCNNNNNNNGC	4 cut(s)	226, 715, 746, 1010
BstNSI	RCATGY	1 cut(s)	884
BstPAI	GACNNNNGTC	1 cut(s)	663
BstSFI	CTRYAG	1 cut(s)	80
BstUI	CGCG	1 cut(s)	180
BstV1I	GCAGC	2 cut(s)	727, 1022
BstV2I	GAAGAC	3 cut(s)	476, 506, 612
BstX2I	RGATCY	2 cut(s)	282, 547
BstYI	RGATCY	2 cut(s)	282, 547
BsuI	GTATCC	1 cut(s)	1061
BsuRI	GGCC	1 cut(s)	192
BtsCI	GGATG	5 cut(s)	446, 592, 604, 807, 1024
BtsIMutI	CAGTG	3 cut(s)	145, 327, 1036
Cac8I	GCNNGC	3 cut(s)	210, 713, 720
CciI	TCATGA	2 cut(s)	298, 531
CfoI	GCGC	3 cut(s)	87, 180, 711
Csp6I	GTAC	2 cut(s)	494, 836
CviAII	CATG	6 cut(s)	299, 532, 584, 750, 764, 881
CviJI	RGCY	8 cut(s)	151, 186, 192, 652, 704, 718, 722, 917
CviKI_1	RGCY	8 cut(s)	151, 186, 192, 652, 704, 718, 722, 917
CviQI	GTAC	2 cut(s)	494, 836
DdeI	CTNAG	4 cut(s)	276, 392, 653, 978
DpnI	GATC	8 cut(s)	284, 303, 438, 527, 536, 549, 804, 864
DpnII	GATC	8 cut(s)	282, 301, 436, 525, 534, 547, 802, 862
Eco130I	CCWWGG	1 cut(s)	233
Eco47III	AGCGCT	1 cut(s)	86
Eco57I	CTGAAG	4 cut(s)	121, 624, 852, 986
EcoNI	CCTNNNNNAGG	1 cut(s)	170
EcoT14I	CCWWGG	1 cut(s)	233
ErhI	CCWWGG	1 cut(s)	233
FaeI	CATG	6 cut(s)	302, 535, 587, 753, 767, 884
FalI	AAGNNNNNCTT	2 cut(s)	563, 595
FaqI	GGGAC	3 cut(s)	402, 671, 968
FatI	CATG	6 cut(s)	298, 531, 583, 749, 763, 880
FauI	CCCGC	1 cut(s)	720
FbaI	TGATCA	3 cut(s)	301, 534, 862
Fnu4HI	GCNGC	3 cut(s)	230, 716, 1011
FokI	GGATG	5 cut(s)	433, 579, 611, 794, 1031
Fsp4HI	GCNGC	3 cut(s)	230, 716, 1011
FspBI	CTAG	1 cut(s)	719
GlaI	GCGC	3 cut(s)	86, 179, 710
GluI	GCNGC	3 cut(s)	230, 716, 1011
HaeII	RGCGCY	1 cut(s)	88
HaeIII	GGCC	1 cut(s)	192
HapII	CCGG	3 cut(s)	148, 450, 596
HhaI	GCGC	3 cut(s)	87, 180, 711
Hin1II	CATG	6 cut(s)	302, 535, 587, 753, 767, 884
Hin6I	GCGC	3 cut(s)	85, 178, 709
HinP1I	GCGC	3 cut(s)	85, 178, 709
HincII	GTYRAC	1 cut(s)	668
HindII	GTYRAC	1 cut(s)	668
HinfI	GANTC	5 cut(s)	9, 43, 154, 200, 366
HpaII	CCGG	3 cut(s)	148, 450, 596
HphI	GGTGA	6 cut(s)	16, 38, 74, 464, 746, 950
Hpy166II	GTNNAC	3 cut(s)	343, 404, 668
Hpy188I	TCNGA	4 cut(s)	552, 871, 892, 966
Hpy188III	TCNNGA	9 cut(s)	97, 173, 299, 305, 532, 596, 860, 932, 995
Hpy8I	GTNNAC	3 cut(s)	343, 404, 668
Hpy99I	CGWCG	2 cut(s)	229, 800
HpyAV	CCTTC	1 cut(s)	53
HpyCH4III	ACNGT	3 cut(s)	331, 1031, 1041
HpyCH4V	TGCA	7 cut(s)	120, 143, 348, 509, 740, 749, 884
HpyF10VI	GCNNNNNNNGC	4 cut(s)	226, 715, 746, 1010
HpyF3I	CTNAG	4 cut(s)	276, 392, 653, 978
Hsp92II	CATG	6 cut(s)	302, 535, 587, 753, 767, 884
HspAI	GCGC	3 cut(s)	85, 178, 709
Kpn2I	TCCGGA	1 cut(s)	595
Ksp22I	TGATCA	3 cut(s)	301, 534, 862
Kzo9I	GATC	8 cut(s)	282, 301, 436, 525, 534, 547, 802, 862
LmnI	GCTCC	2 cut(s)	92, 175
Lsp1109I	GCAGC	2 cut(s)	727, 1022
LweI	GCATC	5 cut(s)	455, 585, 589, 727, 816
MaeI	CTAG	1 cut(s)	719
MaeIII	GTNAC	3 cut(s)	44, 619, 626
MalI	GATC	8 cut(s)	284, 303, 438, 527, 536, 549, 804, 864
MboI	GATC	8 cut(s)	282, 301, 436, 525, 534, 547, 802, 862
MboII	GAAGA	7 cut(s)	77, 149, 327, 481, 511, 571, 617
MfeI	CAATTG	1 cut(s)	54
MflI	RGATCY	2 cut(s)	282, 547
MlyI	GAGTC	2 cut(s)	52, 209
MmeI	TCCRAC	1 cut(s)	676
MnlI	CCTC	7 cut(s)	59, 82, 176, 232, 648, 1008, 1079
MroI	TCCGGA	1 cut(s)	595
MroXI	GAANNNNTTC	1 cut(s)	13
MseI	TTAA	5 cut(s)	195, 243, 414, 543, 615
MslI	CAYNNNNRTG	3 cut(s)	297, 597, 822
MspCI	CTTAAG	1 cut(s)	194
MspI	CCGG	3 cut(s)	148, 450, 596
MunI	CAATTG	1 cut(s)	54
MvnI	CGCG	1 cut(s)	180
MwoI	GCNNNNNNNGC	4 cut(s)	226, 715, 746, 1010
NdeII	GATC	8 cut(s)	282, 301, 436, 525, 534, 547, 802, 862
NheI	GCTAGC	1 cut(s)	718
NlaIII	CATG	6 cut(s)	302, 535, 587, 753, 767, 884
NmuCI	GTSAC	2 cut(s)	44, 626
NspI	RCATGY	1 cut(s)	884
PagI	TCATGA	2 cut(s)	298, 531
PcsI	WCGNNNNNNNCGW	1 cut(s)	676
PdmI	GAANNNNTTC	1 cut(s)	13
PfeI	GAWTC	3 cut(s)	9, 154, 366
PkrI	GCNGC	3 cut(s)	231, 717, 1012
Ple19I	CGATCG	1 cut(s)	805
PleI	GAGTC	2 cut(s)	51, 208
PpsI	GAGTC	2 cut(s)	51, 208
PshAI	GACNNNNGTC	1 cut(s)	663
PsuI	RGATCY	2 cut(s)	282, 547
PvuI	CGATCG	1 cut(s)	805
RgaI	GCGATCGC	1 cut(s)	805
RsaI	GTAC	2 cut(s)	495, 837
RsaNI	GTAC	2 cut(s)	494, 836
RseI	CAYNNNNRTG	3 cut(s)	297, 597, 822
SaqAI	TTAA	5 cut(s)	195, 243, 414, 543, 615
SatI	GCNGC	3 cut(s)	230, 716, 1011
Sau3AI	GATC	8 cut(s)	282, 301, 436, 525, 534, 547, 802, 862
SchI	GAGTC	2 cut(s)	52, 209
SfaAI	GCGATCGC	1 cut(s)	805
SfaNI	GCATC	5 cut(s)	455, 585, 589, 727, 816
SfcI	CTRYAG	1 cut(s)	80
SgfI	GCGATCGC	1 cut(s)	805
SmiMI	CAYNNNNRTG	3 cut(s)	297, 597, 822
SmlI	CTYRAG	2 cut(s)	194, 847
SmoI	CTYRAG	2 cut(s)	194, 847
SsiI	CCGC	3 cut(s)	180, 230, 713
SspMI	CTAG	1 cut(s)	719
StyI	CCWWGG	1 cut(s)	233
TaaI	ACNGT	3 cut(s)	331, 1031, 1041
TaqI	TCGA	1 cut(s)	795
TatI	WGTACW	1 cut(s)	835
TauI	GCSGC	1 cut(s)	232
TfiI	GAWTC	3 cut(s)	9, 154, 366
Tru1I	TTAA	5 cut(s)	195, 243, 414, 543, 615
Tru9I	TTAA	5 cut(s)	195, 243, 414, 543, 615
TscAI	CASTG	3 cut(s)	145, 334, 1036
TseFI	GTSAC	2 cut(s)	44, 626
TseI	GCWGC	2 cut(s)	715, 1010
Tsp45I	GTSAC	2 cut(s)	44, 626
TspDTI	ATGAA	7 cut(s)	281, 287, 533, 581, 600, 752, 806
TspRI	CASTG	3 cut(s)	145, 334, 1036
Vha464I	CTTAAG	1 cut(s)	194
XagI	CCTNNNNNAGG	1 cut(s)	170
XapI	RAATTY	5 cut(s)	101, 587, 791, 813, 853
XceI	RCATGY	1 cut(s)	884
XmnI	GAANNNNTTC	1 cut(s)	13
XspI	CTAG	1 cut(s)	719

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.