Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0002242

Physical Location & Seq

Genomic Coordinates Reverse (-)

5311642 .. 5315194

Gene Structure 3553 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00283390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGATTGGAAGACTCTTGGCAGGAATTGGGATAGGAACGAAGTTTGGATGCGGGACCTTAGTCCGAGGCCATCACCGCATCAAAGAGTCCCGTAAGGGATATGGTTATGCGACTCTATTAAGTTTTGGTTTTGTGATTCACGATATGGTTTTACTTCCAGCTGCTGGTGCAATGGAGAATGGTGACACATTGCTATTCACTTTGACAAATCAAGGACAACTGCATGTCCATGACAAGGCTTGCCGGTCTGCCTTAATGTCTCACCAAAAGAAAAGGACTGATGGGACTGCAGTGCAGTATCCTATGTTTATACCTACTACTGAACTGTGTATGACAGTGGCAAAGCTTGCATTGGTGGATAGAGATGGGAAATACTCCTCAGCTCTGTCCAAGACACACTTTGAAGAAGGGGGTGCAAAGTGGCCTTTGACTGGTGGTGTTCCCAGCCAACTTTCTGATGCTGAAAATTTTCATGTCAAGAGACTATATGTGGCAGGATATCAAGATGGATCTGTTCGAATATGGGATGCCACCTATCCAACTCCGTCGCTTATATATGCTATAGGTCCTGAGGTAAAAGGCATCAGATCTACAGGTGCAAATGGAACAGTCTCAGCATTGGAATTGTGTTCTCTTACTTTAAAATTAGCTATTGGTGATGTGTGTGGTCTGGTGCCGCAACGGAGACAGGGACTTAGTTCAGGTGGACTAATGATTAAGGAGTTGAATGACTTGCTTGATCGTTTGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0002791 GO:0002792 GO:0002793 GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0008047 GO:0008150 GO:0010646 GO:0010648 GO:0010817 GO:0016020 GO:0017016 GO:0017137 GO:0017157 GO:0019899 GO:0019905 GO:0023051 GO:0023057 GO:0030234 GO:0030695 GO:0031267 GO:0032879 GO:0032880 GO:0033500 GO:0042592 GO:0042593 GO:0043085 GO:0043087 GO:0043547 GO:0044093 GO:0044424 GO:0044464 GO:0046676 GO:0046883 GO:0046888 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048878 GO:0050708 GO:0050709 GO:0050714 GO:0050789 GO:0050790 GO:0050794 GO:0050796 GO:0051020 GO:0051046 GO:0051047 GO:0051048 GO:0051049 GO:0051050 GO:0051051 GO:0051222 GO:0051223 GO:0051224 GO:0051336 GO:0051345 GO:0060589 GO:0060627 GO:0065007 GO:0065008 GO:0065009 GO:0070201 GO:0071944 GO:0090087 GO:0090276 GO:0090278 GO:0098772 GO:1903530 GO:1903531 GO:1903532 GO:1904950 GO:1904951

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANAPC4_WD40 Synaptobrevin

Protein Analysis

250

Amino Acids

26.91

Weight (kDa)

9.07

Isoelectric Point (pI)

26.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002242)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57160 AT5G57160
fragaria_vesca	FvH4_4g07160
malus_domestica	MD16G1247900.v1.1
prunus_persica	Prupe.1G074600_v2.0.a1 Prupe.1G074600_v2.0.a1
pyrus_communis	pycom12g16110 pycom12g16210 pycom16g20800
rosa_chinensis	RchiOBHm_Chr0c22g0500591 RchiOBHm_Chr4g0399311 RchiOBHm_Chr5g0052491 RchiOBHm_Chr7g0206661
rosa_laevigata	RLG00000009274 RLG00000012027 RLG00000013478 RLG00000013735 RLG00000034678
rosa_multiflora	Rmu_co8101330.1_g000001 Rmu_co8329359.1_g000001 Rmu_sc0000924.1_g000031 Rmu_sc0003135.1_g000008
rosa_roxburghii	Rroxscaffold_4G00283390 Rroxscaffold_4G00329320 Rroxscaffold_5G00344240
rosa_rugosa	Rorug04G0016500
rosa_samantha	Rh2AG218900 Rh2BG192100 Rh2BG230700 Rh2CG361900 Rh2DG225100 Rh3BG254200 Rh3DG357600 Rh4AG094200 Rh4AG102100 Rh4BG091600 Rh4CG102400 Rh4CG110300 Rh4DG086300 Rh7DG237100 Rh7DG335000 Rh7DG335200
rosa_wichuraiana	Rw4G007730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	673
AccB7I	CCANNNNNTGG	1 cut(s)	164
AciI	CCGC	3 cut(s)	51, 76, 677
AclWI	GGATC	1 cut(s)	517
AcsI	RAATTY	1 cut(s)	466
AfiI	CCNNNNNNNGG	3 cut(s)	164, 235, 431
AgsI	TTSAA	2 cut(s)	404, 727
AluBI	AGCT	4 cut(s)	161, 346, 383, 650
AluI	AGCT	4 cut(s)	161, 346, 383, 650
Alw26I	GTCTC	4 cut(s)	264, 475, 616, 679
AlwI	GGATC	1 cut(s)	517
AlwNI	CAGNNNCTG	1 cut(s)	164
AoxI	GGCC	2 cut(s)	67, 422
ApeKI	GCWGC	1 cut(s)	161
ApoI	RAATTY	1 cut(s)	466
Asp700I	GAANNNNTTC	1 cut(s)	468
AspS9I	GGNCC	2 cut(s)	54, 566
AsuHPI	GGTGA	4 cut(s)	65, 194, 254, 668
AsuII	TTCGAA	1 cut(s)	517
AvaII	GGWCC	2 cut(s)	54, 566
AxyI	CCTNAGG	1 cut(s)	570
BanI	GGYRCC	1 cut(s)	673
BbsI	GAAGAC	1 cut(s)	16
BbvCI	CCTCAGC	1 cut(s)	379
BbvI	GCAGC	1 cut(s)	148
BccI	CCATC	4 cut(s)	78, 275, 359, 500
BciVI	GTATCC	1 cut(s)	309
BcoDI	GTCTC	4 cut(s)	264, 475, 616, 679
BfmI	CTRYAG	3 cut(s)	288, 561, 591
BfuI	GTATCC	1 cut(s)	309
BglII	AGATCT	1 cut(s)	587
BisI	GCNGC	2 cut(s)	162, 677
BlsI	GCNGC	2 cut(s)	163, 678
Bme18I	GGWCC	2 cut(s)	54, 566
BmgT120I	GGNCC	2 cut(s)	54, 566
BmiI	GGNNCC	2 cut(s)	55, 675
BmsI	GCATC	5 cut(s)	38, 87, 448, 517, 591
BoxI	GACNNNNGTC	1 cut(s)	59
BpiI	GAAGAC	1 cut(s)	16
Bpu10I	CCTNAGC	1 cut(s)	379
Bpu14I	TTCGAA	1 cut(s)	517
BsaJI	CCNNGG	1 cut(s)	64
Bsc4I	CCNNNNNNNGG	3 cut(s)	164, 235, 431
Bse118I	RCCGGY	1 cut(s)	243
Bse1I	ACTGG	1 cut(s)	436
Bse21I	CCTNAGG	1 cut(s)	570
Bse3DI	GCAATG	2 cut(s)	177, 188
BseDI	CCNNGG	1 cut(s)	64
BseGI	GGATG	2 cut(s)	53, 532
BseLI	CCNNNNNNNGG	3 cut(s)	164, 235, 431
BseMI	GCAATG	2 cut(s)	177, 188
BseMII	CTCAG	3 cut(s)	393, 561, 627
BseNI	ACTGG	1 cut(s)	436
BseRI	GAGGAG	1 cut(s)	367
BseXI	GCAGC	1 cut(s)	148
BseYI	CCCAGC	1 cut(s)	443
BsgI	GTGCAG	1 cut(s)	314
BshFI	GGCC	2 cut(s)	69, 424
BshNI	GGYRCC	1 cut(s)	673
BsiSI	CCGG	1 cut(s)	244
BslFI	GGGAC	4 cut(s)	67, 73, 298, 705
BslI	CCNNNNNNNGG	3 cut(s)	164, 235, 431
BsmAI	GTCTC	4 cut(s)	264, 475, 616, 679
BsmFI	GGGAC	4 cut(s)	67, 73, 298, 705
BsnI	GGCC	2 cut(s)	69, 424
Bsp119I	TTCGAA	1 cut(s)	517
Bsp143I	GATC	3 cut(s)	509, 587, 739
BspACI	CCGC	3 cut(s)	51, 76, 677
BspANI	GGCC	2 cut(s)	69, 424
BspCNI	CTCAG	3 cut(s)	392, 562, 626
BspLI	GGNNCC	2 cut(s)	55, 675
BspMAI	CTGCAG	1 cut(s)	292
BspPI	GGATC	1 cut(s)	517
BspT104I	TTCGAA	1 cut(s)	517
BspT107I	GGYRCC	1 cut(s)	673
BsrDI	GCAATG	2 cut(s)	177, 188
BsrFI	RCCGGY	1 cut(s)	243
BsrI	ACTGG	1 cut(s)	436
BssAI	RCCGGY	1 cut(s)	243
BssECI	CCNNGG	1 cut(s)	64
BssMI	GATC	3 cut(s)	509, 587, 739
Bst4CI	ACNGT	3 cut(s)	327, 337, 610
BstAPI	GCANNNNNTGC	1 cut(s)	347
BstBI	TTCGAA	1 cut(s)	517
BstC8I	GCNNGC	2 cut(s)	241, 348
BstDEI	CTNAG	5 cut(s)	58, 379, 570, 613, 695
BstF5I	GGATG	2 cut(s)	53, 532
BstKTI	GATC	3 cut(s)	512, 590, 742
BstMAI	GTCTC	4 cut(s)	264, 475, 616, 679
BstMBI	GATC	3 cut(s)	509, 587, 739
BstMWI	GCNNNNNNNGC	3 cut(s)	75, 167, 347
BstNSI	RCATGY	1 cut(s)	227
BstPAI	GACNNNNGTC	1 cut(s)	59
BstSFI	CTRYAG	3 cut(s)	288, 561, 591
BstV1I	GCAGC	1 cut(s)	148
BstV2I	GAAGAC	1 cut(s)	16
BstX2I	RGATCY	2 cut(s)	509, 587
BstYI	RGATCY	2 cut(s)	509, 587
Bsu36I	CCTNAGG	1 cut(s)	570
BsuI	GTATCC	1 cut(s)	309
BsuRI	GGCC	2 cut(s)	69, 424
BtsCI	GGATG	2 cut(s)	53, 532
BtsI	GCAGTG	1 cut(s)	297
BtsIMutI	CAGTG	2 cut(s)	297, 342
Cac8I	GCNNGC	2 cut(s)	241, 348
CaiI	CAGNNNCTG	1 cut(s)	164
Cfr10I	RCCGGY	1 cut(s)	243
Cfr13I	GGNCC	2 cut(s)	54, 566
CviAII	CATG	3 cut(s)	224, 230, 473
CviJI	RGCY	8 cut(s)	69, 161, 239, 346, 383, 424, 447, 650
CviKI_1	RGCY	8 cut(s)	69, 161, 239, 346, 383, 424, 447, 650
DdeI	CTNAG	5 cut(s)	58, 379, 570, 613, 695
DpnI	GATC	3 cut(s)	511, 589, 741
DpnII	GATC	3 cut(s)	509, 587, 739
DraI	TTTAAA	1 cut(s)	642
Eco32I	GATATC	1 cut(s)	500
Eco47I	GGWCC	2 cut(s)	54, 566
Eco81I	CCTNAGG	1 cut(s)	570
EcoO109I	RGGNCCY	2 cut(s)	54, 566
EcoRV	GATATC	1 cut(s)	500
FaeI	CATG	3 cut(s)	227, 233, 476
FalI	AAGNNNNNCTT	2 cut(s)	383, 415
FaqI	GGGAC	4 cut(s)	67, 73, 298, 705
FatI	CATG	3 cut(s)	223, 229, 472
FauI	CCCGC	1 cut(s)	44
Fnu4HI	GCNGC	2 cut(s)	162, 677
FokI	GGATG	2 cut(s)	60, 539
Fsp4HI	GCNGC	2 cut(s)	162, 677
GluI	GCNGC	2 cut(s)	162, 677
GsaI	CCCAGC	1 cut(s)	447
HaeIII	GGCC	2 cut(s)	69, 424
HapII	CCGG	1 cut(s)	244
Hin1II	CATG	3 cut(s)	227, 233, 476
HindIII	AAGCTT	1 cut(s)	344
HinfI	GANTC	4 cut(s)	12, 86, 112, 136
HpaII	CCGG	1 cut(s)	244
HphI	GGTGA	4 cut(s)	65, 194, 254, 668
Hpy166II	GTNNAC	1 cut(s)	707
Hpy188I	TCNGA	3 cut(s)	65, 457, 587
Hpy188III	TCNNGA	4 cut(s)	140, 478, 503, 569
Hpy8I	GTNNAC	1 cut(s)	707
Hpy99I	CGWCG	1 cut(s)	550
HpyAV	CCTTC	1 cut(s)	401
HpyCH4III	ACNGT	3 cut(s)	327, 337, 610
HpyCH4V	TGCA	7 cut(s)	170, 223, 290, 295, 350, 416, 599
HpyF10VI	GCNNNNNNNGC	3 cut(s)	75, 167, 347
HpyF3I	CTNAG	5 cut(s)	58, 379, 570, 613, 695
Hsp92II	CATG	3 cut(s)	227, 233, 476
Kzo9I	GATC	3 cut(s)	509, 587, 739
Lsp1109I	GCAGC	1 cut(s)	148
LweI	GCATC	5 cut(s)	38, 87, 448, 517, 591
MaeIII	GTNAC	1 cut(s)	182
MalI	GATC	3 cut(s)	511, 589, 741
MboI	GATC	3 cut(s)	509, 587, 739
MboII	GAAGA	2 cut(s)	21, 416
MflI	RGATCY	2 cut(s)	509, 587
MluCI	AATT	4 cut(s)	24, 466, 623, 644
MlyI	GAGTC	3 cut(s)	6, 95, 106
MmeI	TCCRAC	1 cut(s)	563
MnlI	CCTC	3 cut(s)	59, 388, 565
MroXI	GAANNNNTTC	1 cut(s)	468
MseI	TTAA	4 cut(s)	119, 254, 641, 717
MslI	CAYNNNNRTG	1 cut(s)	228
MspA1I	CMGCKG	1 cut(s)	161
MspI	CCGG	1 cut(s)	244
MwoI	GCNNNNNNNGC	3 cut(s)	75, 167, 347
NdeII	GATC	3 cut(s)	509, 587, 739
NlaIII	CATG	3 cut(s)	227, 233, 476
NlaIV	GGNNCC	2 cut(s)	55, 675
NmuCI	GTSAC	1 cut(s)	182
NspI	RCATGY	1 cut(s)	227
NspV	TTCGAA	1 cut(s)	517
PdmI	GAANNNNTTC	1 cut(s)	468
PfeI	GAWTC	1 cut(s)	136
PflMI	CCANNNNNTGG	1 cut(s)	164
PkrI	GCNGC	2 cut(s)	163, 678
PleI	GAGTC	3 cut(s)	6, 94, 106
PpsI	GAGTC	3 cut(s)	6, 94, 106
PpuMI	RGGWCCY	2 cut(s)	54, 566
PshAI	GACNNNNGTC	1 cut(s)	59
Psp5II	RGGWCCY	2 cut(s)	54, 566
PspFI	CCCAGC	1 cut(s)	443
PspN4I	GGNNCC	2 cut(s)	55, 675
PspPI	GGNCC	2 cut(s)	54, 566
PspPPI	RGGWCCY	2 cut(s)	54, 566
PstI	CTGCAG	1 cut(s)	292
PstNI	CAGNNNCTG	1 cut(s)	164
PsuI	RGATCY	2 cut(s)	509, 587
PvuII	CAGCTG	1 cut(s)	161
RseI	CAYNNNNRTG	1 cut(s)	228
SaqAI	TTAA	4 cut(s)	119, 254, 641, 717
SatI	GCNGC	2 cut(s)	162, 677
Sau3AI	GATC	3 cut(s)	509, 587, 739
Sau96I	GGNCC	2 cut(s)	54, 566
SchI	GAGTC	3 cut(s)	6, 95, 106
SfaNI	GCATC	5 cut(s)	38, 87, 448, 517, 591
SfcI	CTRYAG	3 cut(s)	288, 561, 591
SfuI	TTCGAA	1 cut(s)	517
SinI	GGWCC	2 cut(s)	54, 566
SmiMI	CAYNNNNRTG	1 cut(s)	228
Sse9I	AATT	4 cut(s)	24, 466, 623, 644
SsiI	CCGC	3 cut(s)	51, 76, 677
TaaI	ACNGT	3 cut(s)	327, 337, 610
TaqI	TCGA	1 cut(s)	517
TasI	AATT	4 cut(s)	24, 466, 623, 644
TauI	GCSGC	1 cut(s)	679
TfiI	GAWTC	1 cut(s)	136
Tru1I	TTAA	4 cut(s)	119, 254, 641, 717
Tru9I	TTAA	4 cut(s)	119, 254, 641, 717
TscAI	CASTG	2 cut(s)	297, 342
TseFI	GTSAC	1 cut(s)	182
TseI	GCWGC	1 cut(s)	161
Tsp45I	GTSAC	1 cut(s)	182
TspDTI	ATGAA	1 cut(s)	461
TspGWI	ACGGA	2 cut(s)	534, 697
TspRI	CASTG	2 cut(s)	297, 342
Van91I	CCANNNNNTGG	1 cut(s)	164
VpaK11BI	GGWCC	2 cut(s)	54, 566
XapI	RAATTY	1 cut(s)	466
XceI	RCATGY	1 cut(s)	227
XmnI	GAANNNNTTC	1 cut(s)	468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.