Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002242

Physical Location & Seq

Genomic Coordinates Forward (+)

24258811 .. 24261786

Gene Structure 2976 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ18496

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGTTTTGGGATATATCAACTGCTGAGTCTACCAAGGATCATAGATCTAAAAAATTAGCTAACAATGTTGCGAAGCTAGAGTTATCATCAGATGACAAGAGACTCCTTGTCATAGTTTTACACTGGTCTGCAAATAGGTTAAGTCATCATCCTAGGGGCCAACTCTTTGTTTATGGAGGTGAAGGAATTGGGTCTGAAGAAGTTCTCACGTTCTATATGGTTTTACTTCCAGCTACTGGTGCAATGGAGAATGGTGACACATTGCTTTTCACTTTGACAAATCAGGGACAACTGCATGTCTATGACAAGGCTTGCTGGTCTGCCTTAATGTCTCACCAAAAGAAAAGGATTGATGGGACTGCAGTGCAGTATCCTATGTTTATACCTACTACTAAACCGTGTATGACAGTGGTAAAGCTTGCTTTGGTGGATAGAGATGGGAAATACTCCTCAGCTCTGTCCAAGGTAGTGTTCTTTTGTGACACAATAAACTCTAGTTACATTGCATCTTGGTACTATCATCAACCATCACTTAGGTTTTCTATAATAATGAGATTGTCTCGGCTGAAAAACTTCACGAAGCATATAGAAGGAGAATTCAAGTATTCTTCCTCTTCCCTGTCTCTTCCTTTGTTGATTTTGTGTCTTTTGGTCATTAAGGAAGTTTTAGTTGACAAGTCTAATGCGAAACACACTTTGAAGAAGGGGGGTGCAAAGTGGCCTTTGACTGGTGGTGTTCCCAGCCAACTTTCTGATGCTGAAAATTTTTATGTCGAGAGACTATATGTAGCAGGATATCAAGATGGATCTGTTCCAATATGGGATGCCACCTATCCAACTCCGTCGCTTATATATGCTATAGGTCCTGAGGTAAAAGGTATCAGATCTACAGGTGCAAATGGAACAGTCTCAGCATTGGAATTGTGTTCTCTTACTTTAAAATTAGCTATTGGTGATGTGTGTGGTCTGGTGCCGCAACGGAGACAGGGACTTAGTTCAGGTGGACTAATGATTAAGGAGTTGAATGACTTGCTTGATCGTTTGGCATCAGGTGAAAATAGGGCATTGAAGTTGGAAAAGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0002791 GO:0002792 GO:0002793 GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0008047 GO:0008150 GO:0010646 GO:0010648 GO:0010817 GO:0016020 GO:0017016 GO:0017137 GO:0017157 GO:0019899 GO:0019905 GO:0023051 GO:0023057 GO:0030234 GO:0030695 GO:0031267 GO:0032879 GO:0032880 GO:0033500 GO:0042592 GO:0042593 GO:0043085 GO:0043087 GO:0043547 GO:0044093 GO:0044424 GO:0044464 GO:0046676 GO:0046883 GO:0046888 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048878 GO:0050708 GO:0050709 GO:0050714 GO:0050789 GO:0050790 GO:0050794 GO:0050796 GO:0051020 GO:0051046 GO:0051047 GO:0051048 GO:0051049 GO:0051050 GO:0051051 GO:0051222 GO:0051223 GO:0051224 GO:0051336 GO:0051345 GO:0060589 GO:0060627 GO:0065007 GO:0065008 GO:0065009 GO:0070201 GO:0071944 GO:0090087 GO:0090276 GO:0090278 GO:0098772 GO:1903530 GO:1903531 GO:1903532 GO:1904950 GO:1904951

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANAPC4_WD40 Synaptobrevin

Protein Analysis

361

Amino Acids

39.97

Weight (kDa)

9.03

Isoelectric Point (pI)

30.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002242)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57160 AT5G57160
fragaria_vesca	FvH4_4g07160
malus_domestica	MD16G1247900.v1.1
prunus_persica	Prupe.1G074600_v2.0.a1 Prupe.1G074600_v2.0.a1
pyrus_communis	pycom12g16110 pycom12g16210 pycom16g20800
rosa_chinensis	RchiOBHm_Chr0c22g0500591 RchiOBHm_Chr4g0399311 RchiOBHm_Chr5g0052491 RchiOBHm_Chr7g0206661
rosa_laevigata	RLG00000009274 RLG00000012027 RLG00000013478 RLG00000013735 RLG00000034678
rosa_multiflora	Rmu_co8101330.1_g000001 Rmu_co8329359.1_g000001 Rmu_sc0000924.1_g000031 Rmu_sc0003135.1_g000008
rosa_roxburghii	Rroxscaffold_4G00283390 Rroxscaffold_4G00329320 Rroxscaffold_5G00344240
rosa_rugosa	Rorug04G0016500
rosa_samantha	Rh2AG218900 Rh2BG192100 Rh2BG230700 Rh2CG361900 Rh2DG225100 Rh3BG254200 Rh3DG357600 Rh4AG094200 Rh4AG102100 Rh4BG091600 Rh4CG102400 Rh4CG110300 Rh4DG086300 Rh7DG237100 Rh7DG335000 Rh7DG335200
rosa_wichuraiana	Rw4G007730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	970
AccB7I	CCANNNNNTGG	1 cut(s)	236
AccI	GTMKAC	1 cut(s)	29
AciI	CCGC	1 cut(s)	974
AclWI	GGATC	2 cut(s)	45, 814
AcsI	RAATTY	2 cut(s)	596, 763
AcuI	CTGAAG	1 cut(s)	216
AfaI	GTAC	1 cut(s)	515
AfiI	CCNNNNNNNGG	2 cut(s)	236, 728
AgsI	TTSAA	4 cut(s)	601, 700, 1024, 1069
AhdI	GACNNNNNGTC	1 cut(s)	107
AjuI	GAANNNNNNNTTGG	2 cut(s)	455, 487
AluBI	AGCT	7 cut(s)	59, 76, 233, 418, 455, 947, 1081
AluI	AGCT	7 cut(s)	59, 76, 233, 418, 455, 947, 1081
Alw26I	GTCTC	7 cut(s)	94, 336, 564, 627, 772, 913, 976
AlwI	GGATC	2 cut(s)	45, 814
AlwNI	CAGNNNCTG	1 cut(s)	236
AoxI	GGCC	2 cut(s)	157, 719
ApoI	RAATTY	2 cut(s)	596, 763
Asp700I	GAANNNNTTC	2 cut(s)	201, 572
AspA2I	CCTAGG	1 cut(s)	152
AspS9I	GGNCC	2 cut(s)	157, 863
AsuHPI	GGTGA	5 cut(s)	191, 266, 326, 965, 1064
AvaII	GGWCC	1 cut(s)	863
AvrII	CCTAGG	1 cut(s)	152
AxyI	CCTNAGG	1 cut(s)	867
BanI	GGYRCC	1 cut(s)	970
BbvCI	CCTCAGC	1 cut(s)	451
BccI	CCATC	4 cut(s)	347, 431, 535, 797
BciVI	GTATCC	1 cut(s)	381
BcoDI	GTCTC	7 cut(s)	94, 336, 564, 627, 772, 913, 976
BfaI	CTAG	3 cut(s)	77, 153, 495
BfmI	CTRYAG	3 cut(s)	360, 858, 888
BfuI	GTATCC	1 cut(s)	381
BglII	AGATCT	2 cut(s)	44, 884
BisI	GCNGC	1 cut(s)	974
BlnI	CCTAGG	1 cut(s)	152
BlsI	GCNGC	1 cut(s)	975
Bme18I	GGWCC	1 cut(s)	863
BmeRI	GACNNNNNGTC	1 cut(s)	107
BmgT120I	GGNCC	2 cut(s)	157, 863
BmiI	GGNNCC	2 cut(s)	158, 972
BmsI	GCATC	4 cut(s)	515, 745, 814, 1055
BplI	GAGNNNNNCTC	2 cut(s)	544, 576
Bpu10I	CCTNAGC	1 cut(s)	451
BsaJI	CCNNGG	3 cut(s)	33, 152, 462
Bsc4I	CCNNNNNNNGG	2 cut(s)	236, 728
Bse1I	ACTGG	3 cut(s)	128, 241, 733
Bse21I	CCTNAGG	1 cut(s)	867
Bse3DI	GCAATG	3 cut(s)	249, 260, 501
BseDI	CCNNGG	3 cut(s)	33, 152, 462
BseGI	GGATG	2 cut(s)	148, 829
BseLI	CCNNNNNNNGG	2 cut(s)	236, 728
BseMI	GCAATG	3 cut(s)	249, 260, 501
BseMII	CTCAG	4 cut(s)	15, 465, 858, 924
BseNI	ACTGG	3 cut(s)	128, 241, 733
BseRI	GAGGAG	1 cut(s)	439
BseYI	CCCAGC	1 cut(s)	740
BsgI	GTGCAG	1 cut(s)	386
BshFI	GGCC	2 cut(s)	159, 721
BshNI	GGYRCC	1 cut(s)	970
BslFI	GGGAC	3 cut(s)	300, 370, 1002
BslI	CCNNNNNNNGG	2 cut(s)	236, 728
BsmAI	GTCTC	7 cut(s)	94, 336, 564, 627, 772, 913, 976
BsmFI	GGGAC	3 cut(s)	300, 370, 1002
BsnI	GGCC	2 cut(s)	159, 721
Bsp143I	GATC	5 cut(s)	37, 44, 806, 884, 1036
BspACI	CCGC	1 cut(s)	974
BspANI	GGCC	2 cut(s)	159, 721
BspCNI	CTCAG	4 cut(s)	16, 464, 859, 923
BspLI	GGNNCC	2 cut(s)	158, 972
BspMAI	CTGCAG	1 cut(s)	364
BspPI	GGATC	2 cut(s)	45, 814
BspT107I	GGYRCC	1 cut(s)	970
BsrDI	GCAATG	3 cut(s)	249, 260, 501
BsrI	ACTGG	3 cut(s)	128, 241, 733
BssECI	CCNNGG	3 cut(s)	33, 152, 462
BssMI	GATC	5 cut(s)	37, 44, 806, 884, 1036
BssT1I	CCWWGG	3 cut(s)	33, 152, 462
Bst4CI	ACNGT	3 cut(s)	399, 409, 907
Bst6I	CTCTTC	2 cut(s)	619, 630
BstC8I	GCNNGC	2 cut(s)	313, 420
BstDEI	CTNAG	6 cut(s)	24, 451, 533, 867, 910, 992
BstF5I	GGATG	2 cut(s)	148, 829
BstKTI	GATC	5 cut(s)	40, 47, 809, 887, 1039
BstMAI	GTCTC	7 cut(s)	94, 336, 564, 627, 772, 913, 976
BstMBI	GATC	5 cut(s)	37, 44, 806, 884, 1036
BstMWI	GCNNNNNNNGC	1 cut(s)	239
BstNSI	RCATGY	1 cut(s)	299
BstSFI	CTRYAG	3 cut(s)	360, 858, 888
BstX2I	RGATCY	3 cut(s)	44, 806, 884
BstYI	RGATCY	3 cut(s)	44, 806, 884
Bsu36I	CCTNAGG	1 cut(s)	867
BsuI	GTATCC	1 cut(s)	381
BsuRI	GGCC	2 cut(s)	159, 721
BtsCI	GGATG	2 cut(s)	148, 829
BtsI	GCAGTG	1 cut(s)	369
BtsIMutI	CAGTG	3 cut(s)	121, 369, 414
Cac8I	GCNNGC	2 cut(s)	313, 420
CaiI	CAGNNNCTG	1 cut(s)	236
Cfr13I	GGNCC	2 cut(s)	157, 863
Csp6I	GTAC	1 cut(s)	514
CviAII	CATG	1 cut(s)	296
CviQI	GTAC	1 cut(s)	514
DdeI	CTNAG	6 cut(s)	24, 451, 533, 867, 910, 992
DpnI	GATC	5 cut(s)	39, 46, 808, 886, 1038
DpnII	GATC	5 cut(s)	37, 44, 806, 884, 1036
DraI	TTTAAA	1 cut(s)	939
DriI	GACNNNNNGTC	1 cut(s)	107
Eam1104I	CTCTTC	2 cut(s)	619, 630
Eam1105I	GACNNNNNGTC	1 cut(s)	107
EarI	CTCTTC	2 cut(s)	619, 630
Eco130I	CCWWGG	3 cut(s)	33, 152, 462
Eco32I	GATATC	1 cut(s)	797
Eco47I	GGWCC	1 cut(s)	863
Eco57I	CTGAAG	1 cut(s)	216
Eco81I	CCTNAGG	1 cut(s)	867
EcoO109I	RGGNCCY	1 cut(s)	863
EcoRI	GAATTC	1 cut(s)	596
EcoRV	GATATC	1 cut(s)	797
EcoT14I	CCWWGG	3 cut(s)	33, 152, 462
ErhI	CCWWGG	3 cut(s)	33, 152, 462
FaeI	CATG	1 cut(s)	299
FaqI	GGGAC	3 cut(s)	300, 370, 1002
FatI	CATG	1 cut(s)	295
FblI	GTMKAC	1 cut(s)	29
Fnu4HI	GCNGC	1 cut(s)	974
FokI	GGATG	2 cut(s)	135, 836
Fsp4HI	GCNGC	1 cut(s)	974
FspBI	CTAG	3 cut(s)	77, 153, 495
GluI	GCNGC	1 cut(s)	974
GsaI	CCCAGC	1 cut(s)	744
HaeIII	GGCC	2 cut(s)	159, 721
Hin1II	CATG	1 cut(s)	299
HincII	GTYRAC	1 cut(s)	673
HindII	GTYRAC	1 cut(s)	673
HindIII	AAGCTT	1 cut(s)	416
HinfI	GANTC	2 cut(s)	26, 102
HphI	GGTGA	5 cut(s)	191, 266, 326, 965, 1064
Hpy166II	GTNNAC	3 cut(s)	30, 673, 1004
Hpy188I	TCNGA	4 cut(s)	91, 196, 754, 884
Hpy188III	TCNNGA	4 cut(s)	577, 775, 800, 866
Hpy8I	GTNNAC	3 cut(s)	30, 673, 1004
Hpy99I	CGWCG	1 cut(s)	847
HpyAV	CCTTC	3 cut(s)	176, 584, 697
HpyCH4III	ACNGT	3 cut(s)	399, 409, 907
HpyCH4IV	ACGT	1 cut(s)	209
HpyCH4V	TGCA	8 cut(s)	131, 242, 295, 362, 367, 506, 713, 896
HpyF10VI	GCNNNNNNNGC	1 cut(s)	239
HpyF3I	CTNAG	6 cut(s)	24, 451, 533, 867, 910, 992
HpySE526I	ACGT	1 cut(s)	209
Hsp92II	CATG	1 cut(s)	299
Kzo9I	GATC	5 cut(s)	37, 44, 806, 884, 1036
LweI	GCATC	4 cut(s)	515, 745, 814, 1055
MaeI	CTAG	3 cut(s)	77, 153, 495
MaeII	ACGT	1 cut(s)	209
MaeIII	GTNAC	3 cut(s)	254, 479, 497
MalI	GATC	5 cut(s)	39, 46, 808, 886, 1038
MboI	GATC	5 cut(s)	37, 44, 806, 884, 1036
MboII	GAAGA	5 cut(s)	209, 600, 606, 617, 712
MflI	RGATCY	3 cut(s)	44, 806, 884
MluCI	AATT	6 cut(s)	53, 186, 596, 763, 920, 941
MlyI	GAGTC	2 cut(s)	35, 96
MmeI	TCCRAC	2 cut(s)	860, 1053
MnlI	CCTC	4 cut(s)	170, 460, 622, 862
MroXI	GAANNNNTTC	2 cut(s)	201, 572
MseI	TTAA	5 cut(s)	140, 326, 657, 938, 1014
MslI	CAYNNNNRTG	1 cut(s)	300
MwoI	GCNNNNNNNGC	1 cut(s)	239
NdeII	GATC	5 cut(s)	37, 44, 806, 884, 1036
NlaIII	CATG	1 cut(s)	299
NlaIV	GGNNCC	2 cut(s)	158, 972
NmeAIII	GCCGAG	1 cut(s)	541
NmuCI	GTSAC	2 cut(s)	254, 479
NspI	RCATGY	1 cut(s)	299
PdmI	GAANNNNTTC	2 cut(s)	201, 572
PflMI	CCANNNNNTGG	1 cut(s)	236
PkrI	GCNGC	1 cut(s)	975
PleI	GAGTC	2 cut(s)	34, 96
PpsI	GAGTC	2 cut(s)	34, 96
PpuMI	RGGWCCY	1 cut(s)	863
Psp5II	RGGWCCY	1 cut(s)	863
PspFI	CCCAGC	1 cut(s)	740
PspN4I	GGNNCC	2 cut(s)	158, 972
PspPI	GGNCC	2 cut(s)	157, 863
PspPPI	RGGWCCY	1 cut(s)	863
PstI	CTGCAG	1 cut(s)	364
PstNI	CAGNNNCTG	1 cut(s)	236
PsuI	RGATCY	3 cut(s)	44, 806, 884
RsaI	GTAC	1 cut(s)	515
RsaNI	GTAC	1 cut(s)	514
RseI	CAYNNNNRTG	1 cut(s)	300
SaqAI	TTAA	5 cut(s)	140, 326, 657, 938, 1014
SatI	GCNGC	1 cut(s)	974
Sau3AI	GATC	5 cut(s)	37, 44, 806, 884, 1036
Sau96I	GGNCC	2 cut(s)	157, 863
SchI	GAGTC	2 cut(s)	35, 96
SfaNI	GCATC	4 cut(s)	515, 745, 814, 1055
SfcI	CTRYAG	3 cut(s)	360, 858, 888
SinI	GGWCC	1 cut(s)	863
SmiMI	CAYNNNNRTG	1 cut(s)	300
Sse9I	AATT	6 cut(s)	53, 186, 596, 763, 920, 941
SsiI	CCGC	1 cut(s)	974
SspMI	CTAG	3 cut(s)	77, 153, 495
StyI	CCWWGG	3 cut(s)	33, 152, 462
TaaI	ACNGT	3 cut(s)	399, 409, 907
TaiI	ACGT	1 cut(s)	212
TaqI	TCGA	1 cut(s)	774
TasI	AATT	6 cut(s)	53, 186, 596, 763, 920, 941
TauI	GCSGC	1 cut(s)	976
Tru1I	TTAA	5 cut(s)	140, 326, 657, 938, 1014
Tru9I	TTAA	5 cut(s)	140, 326, 657, 938, 1014
TscAI	CASTG	3 cut(s)	128, 369, 414
TseFI	GTSAC	2 cut(s)	254, 479
Tsp45I	GTSAC	2 cut(s)	254, 479
TspGWI	ACGGA	2 cut(s)	831, 994
TspRI	CASTG	3 cut(s)	128, 369, 414
Van91I	CCANNNNNTGG	1 cut(s)	236
VpaK11BI	GGWCC	1 cut(s)	863
XapI	RAATTY	2 cut(s)	596, 763
XceI	RCATGY	1 cut(s)	299
XmaJI	CCTAGG	1 cut(s)	152
XmiI	GTMKAC	1 cut(s)	29
XmnI	GAANNNNTTC	2 cut(s)	201, 572
XspI	CTAG	3 cut(s)	77, 153, 495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.