Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0002242

Physical Location & Seq

Genomic Coordinates Reverse (-)

22708321 .. 22710203

Gene Structure 1883 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG230700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGAGGTGAAGGAATTGGGCCTGAAGAAGTTCTCACGGTATGATTTCAACTCAATTGATCTTGTTTTGTACTTTGTTGTTAGTTCTGTTACTTATATCTATGTTCCTGTGATACTCAATATTACTGTTAGAGATATGGTTTTACTTCCAGCTGCTGGTGCAATGGAGAATGGTGACACATTGCTATTCACTTTGACAATGGCAAAGCTTGCTTTGGTAGATAGAGATGGGAAATACTCCTCAGCTCTGTCCAAGAAAGTTTCAGTTGACAAGTCTAATGCGAAACACACTTTGAAGAAGGGGGGTGCAAAGTGGCCTTTGACTGGTGGTGTTCCCAGCCAACTTTCTGATGCTGAAATTTTTTATGTCGAGAGACTATATGTAGCAGGATATCAAGATGGATCTGTTCGAATATGGGATGCCACCTATCCAACTCCGTCGCTTATATATGCTATAGGTCCTAAGGGAATTGAAGTTGGAAAAGCTGTGAGCCCACAGCTGGCTCTGAGAGTTGGTGATGCAACTGGTGCATGGAACCGAAGTACATTACTTCTCAAGGTAGAGGCCTCTTATCTGAATACACAAGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0002791 GO:0002792 GO:0002793 GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0008047 GO:0008150 GO:0010646 GO:0010648 GO:0010817 GO:0016020 GO:0017016 GO:0017137 GO:0017157 GO:0019899 GO:0019905 GO:0023051 GO:0023057 GO:0030234 GO:0030695 GO:0031267 GO:0032879 GO:0032880 GO:0033500 GO:0042592 GO:0042593 GO:0043085 GO:0043087 GO:0043547 GO:0044093 GO:0044424 GO:0044464 GO:0046676 GO:0046883 GO:0046888 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048878 GO:0050708 GO:0050709 GO:0050714 GO:0050789 GO:0050790 GO:0050794 GO:0050796 GO:0051020 GO:0051046 GO:0051047 GO:0051048 GO:0051049 GO:0051050 GO:0051051 GO:0051222 GO:0051223 GO:0051224 GO:0051336 GO:0051345 GO:0060589 GO:0060627 GO:0065007 GO:0065008 GO:0065009 GO:0070201 GO:0071944 GO:0090087 GO:0090276 GO:0090278 GO:0098772 GO:1903530 GO:1903531 GO:1903532 GO:1904950 GO:1904951

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANAPC4_WD40 Synaptobrevin

Protein Analysis

196

Amino Acids

21.42

Weight (kDa)

9.12

Isoelectric Point (pI)

26.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002242)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57160 AT5G57160
fragaria_vesca	FvH4_4g07160
malus_domestica	MD16G1247900.v1.1
prunus_persica	Prupe.1G074600_v2.0.a1 Prupe.1G074600_v2.0.a1
pyrus_communis	pycom12g16110 pycom12g16210 pycom16g20800
rosa_chinensis	RchiOBHm_Chr0c22g0500591 RchiOBHm_Chr4g0399311 RchiOBHm_Chr5g0052491 RchiOBHm_Chr7g0206661
rosa_laevigata	RLG00000009274 RLG00000012027 RLG00000013478 RLG00000013735 RLG00000034678
rosa_multiflora	Rmu_co8101330.1_g000001 Rmu_co8329359.1_g000001 Rmu_sc0000924.1_g000031 Rmu_sc0003135.1_g000008
rosa_roxburghii	Rroxscaffold_4G00283390 Rroxscaffold_4G00329320 Rroxscaffold_5G00344240
rosa_rugosa	Rorug04G0016500
rosa_samantha	Rh2AG218900 Rh2BG192100 Rh2BG230700 Rh2CG361900 Rh2DG225100 Rh3BG254200 Rh3DG357600 Rh4AG094200 Rh4AG102100 Rh4BG091600 Rh4CG102400 Rh4CG110300 Rh4DG086300 Rh7DG237100 Rh7DG335000 Rh7DG335200
rosa_wichuraiana	Rw4G007730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	155
AclWI	GGATC	1 cut(s)	409
AcsI	RAATTY	1 cut(s)	357
AcuI	CTGAAG	1 cut(s)	44
AfaI	GTAC	2 cut(s)	71, 544
AfiI	CCNNNNNNNGG	3 cut(s)	155, 323, 499
AgsI	TTSAA	3 cut(s)	49, 295, 473
AluBI	AGCT	5 cut(s)	152, 208, 245, 485, 499
AluI	AGCT	5 cut(s)	152, 208, 245, 485, 499
Alw26I	GTCTC	1 cut(s)	367
AlwI	GGATC	1 cut(s)	409
AlwNI	CAGNNNCTG	1 cut(s)	155
AoxI	GGCC	3 cut(s)	19, 314, 564
ApeKI	GCWGC	1 cut(s)	152
ApoI	RAATTY	1 cut(s)	357
Asp700I	GAANNNNTTC	1 cut(s)	29
AspS9I	GGNCC	2 cut(s)	19, 458
AsuHPI	GGTGA	3 cut(s)	19, 185, 527
AsuII	TTCGAA	1 cut(s)	409
AvaII	GGWCC	1 cut(s)	458
AxyI	CCTNAGG	1 cut(s)	462
BanII	GRGCYC	1 cut(s)	494
BbvCI	CCTCAGC	1 cut(s)	241
BbvI	GCAGC	1 cut(s)	139
BccI	CCATC	2 cut(s)	221, 392
BcoDI	GTCTC	1 cut(s)	367
BfaI	CTAG	1 cut(s)	589
BfmI	CTRYAG	1 cut(s)	453
BisI	GCNGC	1 cut(s)	153
BlsI	GCNGC	1 cut(s)	154
Bme18I	GGWCC	1 cut(s)	458
BmgT120I	GGNCC	2 cut(s)	19, 458
BmiI	GGNNCC	1 cut(s)	536
BmsI	GCATC	3 cut(s)	340, 409, 508
Bpu10I	CCTNAGC	1 cut(s)	241
Bpu14I	TTCGAA	1 cut(s)	409
BpuEI	CTTGAG	1 cut(s)	539
Bsc4I	CCNNNNNNNGG	3 cut(s)	155, 323, 499
Bse1I	ACTGG	2 cut(s)	328, 529
Bse21I	CCTNAGG	1 cut(s)	462
Bse3DI	GCAATG	2 cut(s)	168, 179
BseGI	GGATG	1 cut(s)	424
BseLI	CCNNNNNNNGG	3 cut(s)	155, 323, 499
BseMI	GCAATG	2 cut(s)	168, 179
BseMII	CTCAG	2 cut(s)	255, 497
BseNI	ACTGG	2 cut(s)	328, 529
BseRI	GAGGAG	1 cut(s)	229
BseXI	GCAGC	1 cut(s)	139
BseYI	CCCAGC	1 cut(s)	335
BshFI	GGCC	3 cut(s)	21, 316, 566
BslI	CCNNNNNNNGG	3 cut(s)	155, 323, 499
BsmAI	GTCTC	1 cut(s)	367
BsnI	GGCC	3 cut(s)	21, 316, 566
Bsp119I	TTCGAA	1 cut(s)	409
Bsp1286I	GDGCHC	1 cut(s)	494
Bsp143I	GATC	2 cut(s)	58, 401
BspANI	GGCC	3 cut(s)	21, 316, 566
BspCNI	CTCAG	2 cut(s)	254, 498
BspLI	GGNNCC	1 cut(s)	536
BspPI	GGATC	1 cut(s)	409
BspT104I	TTCGAA	1 cut(s)	409
BsrDI	GCAATG	2 cut(s)	168, 179
BsrI	ACTGG	2 cut(s)	328, 529
BssMI	GATC	2 cut(s)	58, 401
Bst4CI	ACNGT	2 cut(s)	39, 127
BstAPI	GCANNNNNTGC	2 cut(s)	209, 527
BstBI	TTCGAA	1 cut(s)	409
BstC8I	GCNNGC	2 cut(s)	210, 501
BstDEI	CTNAG	3 cut(s)	241, 462, 506
BstF5I	GGATG	1 cut(s)	424
BstKTI	GATC	2 cut(s)	61, 404
BstMAI	GTCTC	1 cut(s)	367
BstMBI	GATC	2 cut(s)	58, 401
BstMWI	GCNNNNNNNGC	3 cut(s)	158, 209, 527
BstSFI	CTRYAG	1 cut(s)	453
BstV1I	GCAGC	1 cut(s)	139
BstX2I	RGATCY	1 cut(s)	401
BstYI	RGATCY	1 cut(s)	401
Bsu36I	CCTNAGG	1 cut(s)	462
BsuRI	GGCC	3 cut(s)	21, 316, 566
BtsCI	GGATG	1 cut(s)	424
Cac8I	GCNNGC	2 cut(s)	210, 501
CaiI	CAGNNNCTG	1 cut(s)	155
Cfr13I	GGNCC	2 cut(s)	19, 458
Csp6I	GTAC	2 cut(s)	70, 543
CviAII	CATG	1 cut(s)	531
CviQI	GTAC	2 cut(s)	70, 543
DdeI	CTNAG	3 cut(s)	241, 462, 506
DpnI	GATC	2 cut(s)	60, 403
DpnII	GATC	2 cut(s)	58, 401
Eco147I	AGGCCT	1 cut(s)	566
Eco24I	GRGCYC	1 cut(s)	494
Eco32I	GATATC	1 cut(s)	392
Eco47I	GGWCC	1 cut(s)	458
Eco57I	CTGAAG	1 cut(s)	44
Eco81I	CCTNAGG	1 cut(s)	462
EcoO109I	RGGNCCY	1 cut(s)	458
EcoRV	GATATC	1 cut(s)	392
EcoT38I	GRGCYC	1 cut(s)	494
FaeI	CATG	1 cut(s)	534
FatI	CATG	1 cut(s)	530
Fnu4HI	GCNGC	1 cut(s)	153
FokI	GGATG	1 cut(s)	431
FriOI	GRGCYC	1 cut(s)	494
Fsp4HI	GCNGC	1 cut(s)	153
FspBI	CTAG	1 cut(s)	589
GluI	GCNGC	1 cut(s)	153
GsaI	CCCAGC	1 cut(s)	339
HaeIII	GGCC	3 cut(s)	21, 316, 566
Hin1II	CATG	1 cut(s)	534
HincII	GTYRAC	1 cut(s)	268
HindII	GTYRAC	1 cut(s)	268
HindIII	AAGCTT	1 cut(s)	206
HphI	GGTGA	3 cut(s)	19, 185, 527
Hpy166II	GTNNAC	1 cut(s)	268
Hpy188I	TCNGA	3 cut(s)	349, 507, 576
Hpy188III	TCNNGA	2 cut(s)	370, 395
Hpy8I	GTNNAC	1 cut(s)	268
Hpy99I	CGWCG	1 cut(s)	442
HpyAV	CCTTC	2 cut(s)	4, 292
HpyCH4III	ACNGT	2 cut(s)	39, 127
HpyCH4V	TGCA	4 cut(s)	161, 308, 521, 530
HpyF10VI	GCNNNNNNNGC	3 cut(s)	158, 209, 527
HpyF3I	CTNAG	3 cut(s)	241, 462, 506
Hsp92II	CATG	1 cut(s)	534
Kzo9I	GATC	2 cut(s)	58, 401
LpnPI	CCDG	9 cut(s)	35, 120, 141, 162, 309, 349, 372, 485, 510
Lsp1109I	GCAGC	1 cut(s)	139
LweI	GCATC	3 cut(s)	340, 409, 508
MaeI	CTAG	1 cut(s)	589
MaeIII	GTNAC	2 cut(s)	88, 173
MalI	GATC	2 cut(s)	60, 403
MboI	GATC	2 cut(s)	58, 401
MboII	GAAGA	2 cut(s)	37, 307
MfeI	CAATTG	1 cut(s)	54
MflI	RGATCY	1 cut(s)	401
MhlI	GDGCHC	1 cut(s)	494
MluCI	AATT	4 cut(s)	14, 54, 357, 468
MmeI	TCCRAC	2 cut(s)	455, 457
MnlI	CCTC	3 cut(s)	250, 556, 577
MroXI	GAANNNNTTC	1 cut(s)	29
MspA1I	CMGCKG	2 cut(s)	152, 499
MunI	CAATTG	1 cut(s)	54
MwoI	GCNNNNNNNGC	3 cut(s)	158, 209, 527
NdeII	GATC	2 cut(s)	58, 401
NlaIII	CATG	1 cut(s)	534
NlaIV	GGNNCC	1 cut(s)	536
NmuCI	GTSAC	1 cut(s)	173
NspV	TTCGAA	1 cut(s)	409
PceI	AGGCCT	1 cut(s)	566
PdmI	GAANNNNTTC	1 cut(s)	29
PflMI	CCANNNNNTGG	1 cut(s)	155
PkrI	GCNGC	1 cut(s)	154
PpuMI	RGGWCCY	1 cut(s)	458
Psp5II	RGGWCCY	1 cut(s)	458
PspFI	CCCAGC	1 cut(s)	335
PspN4I	GGNNCC	1 cut(s)	536
PspPI	GGNCC	2 cut(s)	19, 458
PspPPI	RGGWCCY	1 cut(s)	458
PstNI	CAGNNNCTG	1 cut(s)	155
PsuI	RGATCY	1 cut(s)	401
PvuII	CAGCTG	2 cut(s)	152, 499
RsaI	GTAC	2 cut(s)	71, 544
RsaNI	GTAC	2 cut(s)	70, 543
SatI	GCNGC	1 cut(s)	153
Sau3AI	GATC	2 cut(s)	58, 401
Sau96I	GGNCC	2 cut(s)	19, 458
SduI	GDGCHC	1 cut(s)	494
SetI	ASST	9 cut(s)	9, 154, 210, 247, 428, 460, 487, 501, 561
SfaNI	GCATC	3 cut(s)	340, 409, 508
SfcI	CTRYAG	1 cut(s)	453
SfuI	TTCGAA	1 cut(s)	409
SinI	GGWCC	1 cut(s)	458
SmlI	CTYRAG	1 cut(s)	554
SmoI	CTYRAG	1 cut(s)	554
Sse9I	AATT	4 cut(s)	14, 54, 357, 468
SseBI	AGGCCT	1 cut(s)	566
SspI	AATATT	1 cut(s)	121
SspMI	CTAG	1 cut(s)	589
StuI	AGGCCT	1 cut(s)	566
TaaI	ACNGT	2 cut(s)	39, 127
TaqI	TCGA	2 cut(s)	369, 409
TasI	AATT	4 cut(s)	14, 54, 357, 468
TatI	WGTACW	2 cut(s)	69, 542
TseFI	GTSAC	1 cut(s)	173
TseI	GCWGC	1 cut(s)	152
Tsp45I	GTSAC	1 cut(s)	173
TspGWI	ACGGA	1 cut(s)	426
Van91I	CCANNNNNTGG	1 cut(s)	155
VpaK11BI	GGWCC	1 cut(s)	458
XapI	RAATTY	1 cut(s)	357
XmnI	GAANNNNTTC	1 cut(s)	29
XspI	CTAG	1 cut(s)	589

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.