Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0002242

Physical Location & Seq

Genomic Coordinates Reverse (-)

43459679 .. 43465995

Gene Structure 6317 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG335200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1317 bp

ATGAATAAGGAGGAGACCAAGTTCAGTGTGCTGTGCAGCCTCTTCAATTGGATGCAACGAAGCAAAACGTCAGCCCTGAAGCGCTCCAAGTGCCGGAAATTCCTTGACAACTTCTGCAAAGCAGGGGATTACTTCAGCGCAATCCGGCTGATTCTTCCGAACCTCGATCGGGAGCGCGGCAGCTATGGCCTTAAGGAGTCGGTGCTCGCCACCTGCCTCATCGACGCTCTCGGCATGTCCCGAGACTCCGACGACGCTCTTCGCCTCATCAATTGGCGCAAGGGCGGCGCCAAGACCGGTGCCAATGCCGGCAATTTCGCCCTCGTCGCCGCCGAGGTGCTGCAACGGAGACAGGGACTTAGTTCAGGTGGACTAACGATTAAGGAGTTGAATGACTTGCTTGATCGTTTGGCATCCGGTGAAAATAGGGCAGAGAAGACTTCAATTCTTTCTACTTTGGTACAGAAGACAAATGCACAAGAAATGAAGTGGATCGTCATGATCATTCTTAAAGATCTGAAATTGGGAATTAGTGAAAAGAGCATCTTCCATGAATTTCATCCGGATGCTGAAGACTTGTTTAACGTTACCTGTGACTTGAAATTGGTTTGTGAAAAGCTGAGGGACAGAAGTCAACGACATAAACGACAGGACATTGAAGTTGGGAAAGCTGTGCGCCCGCAGCTAGCTATGAGAGTTGGTGATGCAACTGGTGCATGGAAAAAGTTTCATGGAAAGGAAGTTGTTGTTGAGTGTAAATTCGACGGCGATGGCATCCAAATTCATAAGAATGGAACCGAAGTACATTACTTCTCAAGGAATTTTCTTGATCACTCTGAATATGGACATGCAATGTCAGACATTATTATACAAAATGTTCAGGCCGATAGGTGTATTCTTGATGGTGAGATGTTGGTCTGGGATACATCTCTGAAGCGTTTTGCTGAGTTTGGTTCAAATCAAGAAATAGCAAAGGCAGCGAGGGATGGACTTGACAGTGATAAACAGTTGTGCTATGTTGCATTCGATATCCTTTACGTTGGAGATACTAGTGTAATTCACGAGAGCTTGAAGGAAAGGCATGAGCTTCTCCAGAAAGTAGTGAAGCCTTTGACGGGTCGTTTAGAGATTTTAGTACCCAATGGTGGCCTTAACACTCACCGTTCTTCAGGGGAACCTTGTTGGTCCCTAATTGTTCATACTCTGGATGATGTCGAGAGGTTTTTTAAAGAAACCATTGAGAACAGGCCTTCCTCACAACGGCACCTTCGGGTGTCAATGATGTCAAAGTACATGCCGGAGCAGCGCCTCCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000726 GO:0003674 GO:0003824 GO:0003909 GO:0003910 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005911 GO:0006139 GO:0006259 GO:0006266 GO:0006281 GO:0006289 GO:0006297 GO:0006302 GO:0006303 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009314 GO:0009506 GO:0009628 GO:0009987 GO:0010165 GO:0010212 GO:0016874 GO:0016886 GO:0030054 GO:0032807 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048046 GO:0050896 GO:0051103 GO:0051716 GO:0055044 GO:0071704 GO:0090304 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03450 map03450

Pfam Domains

Protein Families

BRCT_2 DNA_ligase_A_C DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_IV

Protein Analysis

438

Amino Acids

49.75

Weight (kDa)

8.67

Isoelectric Point (pI)

40.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_ligase_A_N	PF04675	7 - 187	6e-39	DNA ligase N terminus
DNA_ligase_A_M	PF01068	227 - 378	6.3e-31	ATP dependent DNA ligase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002242)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57160 AT5G57160
fragaria_vesca	FvH4_4g07160
malus_domestica	MD16G1247900.v1.1
prunus_persica	Prupe.1G074600_v2.0.a1 Prupe.1G074600_v2.0.a1
pyrus_communis	pycom12g16110 pycom12g16210 pycom16g20800
rosa_chinensis	RchiOBHm_Chr0c22g0500591 RchiOBHm_Chr4g0399311 RchiOBHm_Chr5g0052491 RchiOBHm_Chr7g0206661
rosa_laevigata	RLG00000009274 RLG00000012027 RLG00000013478 RLG00000013735 RLG00000034678
rosa_multiflora	Rmu_co8101330.1_g000001 Rmu_co8329359.1_g000001 Rmu_sc0000924.1_g000031 Rmu_sc0003135.1_g000008
rosa_roxburghii	Rroxscaffold_4G00283390 Rroxscaffold_4G00329320 Rroxscaffold_5G00344240
rosa_rugosa	Rorug04G0016500
rosa_samantha	Rh2AG218900 Rh2BG192100 Rh2BG230700 Rh2CG361900 Rh2DG225100 Rh3BG254200 Rh3DG357600 Rh4AG094200 Rh4AG102100 Rh4BG091600 Rh4CG102400 Rh4CG110300 Rh4DG086300 Rh7DG237100 Rh7DG335000 Rh7DG335200
rosa_wichuraiana	Rw4G007730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	221
Acc36I	ACCTGC	1 cut(s)	221
AccB1I	GGYRCC	3 cut(s)	287, 299, 1263
AccII	CGCG	1 cut(s)	177
AccIII	TCCGGA	1 cut(s)	562
AciI	CCGC	4 cut(s)	177, 285, 330, 680
AclI	AACGTT	1 cut(s)	585
AclWI	GGATC	1 cut(s)	500
AcsI	RAATTY	5 cut(s)	98, 554, 758, 780, 820
AcuI	CTGAAG	5 cut(s)	98, 118, 591, 953, 1152
AcyI	GRCGYC	1 cut(s)	288
AfaI	GTAC	4 cut(s)	462, 804, 1137, 1292
AfeI	AGCGCT	1 cut(s)	83
AfiI	CCNNNNNNNGG	5 cut(s)	93, 169, 1115, 1145, 1260
AflII	CTTAAG	1 cut(s)	191
AgeI	ACCGGT	1 cut(s)	296
AgsI	TTSAA	7 cut(s)	46, 391, 444, 601, 659, 957, 1072
AhlI	ACTAGT	1 cut(s)	1049
AloI	GAACNNNNNNTCC	3 cut(s)	37, 1235, 1267
AluBI	AGCT	7 cut(s)	183, 619, 671, 685, 689, 1068, 1087
AluI	AGCT	7 cut(s)	183, 619, 671, 685, 689, 1068, 1087
Alw21I	GWGCWC	1 cut(s)	207
Alw26I	GTCTC	3 cut(s)	8, 237, 343
AlwI	GGATC	1 cut(s)	500
Ama87I	CYCGRG	1 cut(s)	240
Aor13HI	TCCGGA	1 cut(s)	562
Aor51HI	AGCGCT	1 cut(s)	83
AoxI	GGCC	4 cut(s)	187, 882, 1147, 1247
ApeKI	GCWGC	6 cut(s)	36, 180, 340, 682, 977, 1303
ApoI	RAATTY	5 cut(s)	98, 554, 758, 780, 820
AsiGI	ACCGGT	1 cut(s)	296
AspLEI	GCGC	7 cut(s)	84, 140, 177, 279, 290, 678, 1308
AspS9I	GGNCC	1 cut(s)	1185
AsuHPI	GGTGA	4 cut(s)	431, 713, 917, 1151
AsuNHI	GCTAGC	1 cut(s)	685
AvaI	CYCGRG	1 cut(s)	240
AvaII	GGWCC	1 cut(s)	1185
BaeI	ACNNNNGTAYC	2 cut(s)	1038, 1071
BanI	GGYRCC	3 cut(s)	287, 299, 1263
BauI	CACGAG	1 cut(s)	1061
BbsI	GAAGAC	3 cut(s)	443, 473, 579
Bbv12I	GWGCWC	1 cut(s)	207
BbvCI	CCTCAGC	1 cut(s)	620
BbvI	GCAGC	5 cut(s)	48, 192, 327, 694, 989
BccI	CCATC	3 cut(s)	764, 896, 980
BceAI	ACGGC	2 cut(s)	781, 1277
BciVI	GTATCC	1 cut(s)	916
BclI	TGATCA	2 cut(s)	501, 829
BcoDI	GTCTC	3 cut(s)	8, 237, 343
BcuI	ACTAGT	1 cut(s)	1049
BfaI	CTAG	2 cut(s)	686, 1050
BfoI	RGCGCY	3 cut(s)	85, 291, 1309
BfrI	CTTAAG	1 cut(s)	191
BfuAI	ACCTGC	1 cut(s)	221
BfuI	GTATCC	1 cut(s)	916
BglII	AGATCT	1 cut(s)	514
BisI	GCNGC	9 cut(s)	37, 178, 181, 286, 330, 341, 683, 978, 1304
BlsI	GCNGC	9 cut(s)	38, 179, 182, 287, 331, 342, 684, 979, 1305
Bme18I	GGWCC	1 cut(s)	1185
BmeT110I	CYCGRG	1 cut(s)	240
BmgT120I	GGNCC	1 cut(s)	1185
BmiI	GGNNCC	6 cut(s)	289, 301, 796, 1176, 1187, 1265
BmsI	GCATC	6 cut(s)	42, 422, 552, 556, 694, 783
BmtI	GCTAGC	1 cut(s)	689
BoxI	GACNNNNGTC	1 cut(s)	630
BpiI	GAAGAC	3 cut(s)	443, 473, 579
BpmI	CTGGAG	1 cut(s)	1076
Bpu10I	CCTNAGC	1 cut(s)	620
BpuEI	CTTGAG	1 cut(s)	799
BsaHI	GRCGYC	1 cut(s)	288
BsaI	GGTCTC	1 cut(s)	8
BsaJI	CCNNGG	1 cut(s)	333
BsaWI	WCCGGW	3 cut(s)	296, 416, 562
BsaXI	ACNNNNNCTCC	2 cut(s)	5, 35
Bsc4I	CCNNNNNNNGG	5 cut(s)	93, 169, 1115, 1145, 1260
Bse118I	RCCGGY	2 cut(s)	296, 308
Bse1I	ACTGG	1 cut(s)	715
Bse3DI	GCAATG	1 cut(s)	858
BseAI	TCCGGA	1 cut(s)	562
BseDI	CCNNGG	1 cut(s)	333
BseGI	GGATG	7 cut(s)	57, 413, 559, 571, 774, 991, 1213
BseLI	CCNNNNNNNGG	5 cut(s)	93, 169, 1115, 1145, 1260
BseMI	GCAATG	1 cut(s)	858
BseMII	CTCAG	2 cut(s)	611, 936
BseNI	ACTGG	1 cut(s)	715
BseRI	GAGGAG	1 cut(s)	26
BseXI	GCAGC	5 cut(s)	48, 192, 327, 694, 989
BsgI	GTGCAG	1 cut(s)	55
Bsh1236I	CGCG	1 cut(s)	177
Bsh1285I	CGRYCG	1 cut(s)	169
BshFI	GGCC	4 cut(s)	189, 884, 1149, 1249
BshNI	GGYRCC	3 cut(s)	287, 299, 1263
BshTI	ACCGGT	1 cut(s)	296
BsiEI	CGRYCG	1 cut(s)	169
BsiHKAI	GWGCWC	1 cut(s)	207
BsiHKCI	CYCGRG	1 cut(s)	240
BsiSI	CCGG	7 cut(s)	94, 145, 297, 309, 417, 563, 1298
BslFI	GGGAC	4 cut(s)	223, 369, 638, 1171
BslI	CCNNNNNNNGG	5 cut(s)	93, 169, 1115, 1145, 1260
BsmAI	GTCTC	3 cut(s)	8, 237, 343
BsmFI	GGGAC	4 cut(s)	223, 369, 638, 1171
BsmI	GAATGC	1 cut(s)	1022
BsnI	GGCC	4 cut(s)	189, 884, 1149, 1249
Bso31I	GGTCTC	1 cut(s)	8
BsoBI	CYCGRG	1 cut(s)	240
Bsp1286I	GDGCHC	1 cut(s)	207
Bsp13I	TCCGGA	1 cut(s)	562
Bsp143I	GATC	6 cut(s)	166, 403, 492, 501, 514, 829
BspACI	CCGC	4 cut(s)	177, 285, 330, 680
BspANI	GGCC	4 cut(s)	189, 884, 1149, 1249
BspCNI	CTCAG	2 cut(s)	612, 937
BspEI	TCCGGA	1 cut(s)	562
BspFNI	CGCG	1 cut(s)	177
BspHI	TCATGA	1 cut(s)	498
BspLI	GGNNCC	6 cut(s)	289, 301, 796, 1176, 1187, 1265
BspMI	ACCTGC	1 cut(s)	221
BspOI	GCTAGC	1 cut(s)	689
BspPI	GGATC	1 cut(s)	500
BspQI	GCTCTTC	1 cut(s)	264
BspT107I	GGYRCC	3 cut(s)	287, 299, 1263
BspTI	CTTAAG	1 cut(s)	191
BspTNI	GGTCTC	1 cut(s)	8
BsrDI	GCAATG	1 cut(s)	858
BsrFI	RCCGGY	2 cut(s)	296, 308
BsrI	ACTGG	1 cut(s)	715
BssAI	RCCGGY	2 cut(s)	296, 308
BssECI	CCNNGG	1 cut(s)	333
BssMI	GATC	6 cut(s)	166, 403, 492, 501, 514, 829
BssNI	GRCGYC	1 cut(s)	288
BssSI	CACGAG	1 cut(s)	1061
Bst2BI	CACGAG	1 cut(s)	1061
Bst4CI	ACNGT	3 cut(s)	998, 1008, 1163
Bst6I	CTCTTC	2 cut(s)	47, 264
BstACI	GRCGYC	1 cut(s)	288
BstAFI	CTTAAG	1 cut(s)	191
BstAPI	GCANNNNNTGC	1 cut(s)	713
BstC8I	GCNNGC	4 cut(s)	207, 310, 680, 687
BstDEI	CTNAG	3 cut(s)	359, 620, 945
BstF5I	GGATG	7 cut(s)	57, 413, 559, 571, 774, 991, 1213
BstFNI	CGCG	1 cut(s)	177
BstH2I	RGCGCY	3 cut(s)	85, 291, 1309
BstHHI	GCGC	7 cut(s)	84, 140, 177, 279, 290, 678, 1308
BstKTI	GATC	6 cut(s)	169, 406, 495, 504, 517, 832
BstMAI	GTCTC	3 cut(s)	8, 237, 343
BstMBI	GATC	6 cut(s)	166, 403, 492, 501, 514, 829
BstMCI	CGRYCG	1 cut(s)	169
BstMWI	GCNNNNNNNGC	8 cut(s)	90, 186, 285, 326, 682, 713, 977, 1303
BstNSI	RCATGY	3 cut(s)	238, 851, 1297
BstPAI	GACNNNNGTC	1 cut(s)	630
BstUI	CGCG	1 cut(s)	177
BstV1I	GCAGC	5 cut(s)	48, 192, 327, 694, 989
BstV2I	GAAGAC	3 cut(s)	443, 473, 579
BstX2I	RGATCY	1 cut(s)	514
BstYI	RGATCY	1 cut(s)	514
BsuI	GTATCC	1 cut(s)	916
BsuRI	GGCC	4 cut(s)	189, 884, 1149, 1249
BtgZI	GCGATG	1 cut(s)	783
BtsCI	GGATG	7 cut(s)	57, 413, 559, 571, 774, 991, 1213
BtsIMutI	CAGTG	2 cut(s)	31, 1003
BveI	ACCTGC	1 cut(s)	221
Cac8I	GCNNGC	4 cut(s)	207, 310, 680, 687
CciI	TCATGA	1 cut(s)	498
CfoI	GCGC	7 cut(s)	84, 140, 177, 279, 290, 678, 1308
Cfr10I	RCCGGY	2 cut(s)	296, 308
Cfr13I	GGNCC	1 cut(s)	1185
CseI	GACGC	2 cut(s)	233, 263
Csp6I	GTAC	4 cut(s)	461, 803, 1136, 1291
CspAI	ACCGGT	1 cut(s)	296
CviAII	CATG	8 cut(s)	235, 499, 551, 717, 731, 848, 1082, 1294
CviQI	GTAC	4 cut(s)	461, 803, 1136, 1291
DdeI	CTNAG	3 cut(s)	359, 620, 945
DinI	GGCGCC	1 cut(s)	289
DpnI	GATC	6 cut(s)	168, 405, 494, 503, 516, 831
DpnII	GATC	6 cut(s)	166, 403, 492, 501, 514, 829
DraI	TTTAAA	1 cut(s)	1228
Eam1104I	CTCTTC	2 cut(s)	47, 264
EarI	CTCTTC	2 cut(s)	47, 264
Eco147I	AGGCCT	1 cut(s)	1249
Eco31I	GGTCTC	1 cut(s)	8
Eco32I	GATATC	1 cut(s)	1030
Eco47I	GGWCC	1 cut(s)	1185
Eco47III	AGCGCT	1 cut(s)	83
Eco57I	CTGAAG	5 cut(s)	98, 118, 591, 953, 1152
Eco88I	CYCGRG	1 cut(s)	240
EcoRV	GATATC	1 cut(s)	1030
EgeI	GGCGCC	1 cut(s)	289
EheI	GGCGCC	1 cut(s)	289
FaeI	CATG	8 cut(s)	238, 502, 554, 720, 734, 851, 1085, 1297
FalI	AAGNNNNNCTT	2 cut(s)	530, 562
FaqI	GGGAC	4 cut(s)	223, 369, 638, 1171
FatI	CATG	8 cut(s)	234, 498, 550, 716, 730, 847, 1081, 1293
FauI	CCCGC	1 cut(s)	687
FbaI	TGATCA	2 cut(s)	501, 829
Fnu4HI	GCNGC	9 cut(s)	37, 178, 181, 286, 330, 341, 683, 978, 1304
FokI	GGATG	7 cut(s)	64, 400, 546, 578, 761, 998, 1220
Fsp4HI	GCNGC	9 cut(s)	37, 178, 181, 286, 330, 341, 683, 978, 1304
FspBI	CTAG	2 cut(s)	686, 1050
GlaI	GCGC	7 cut(s)	83, 139, 176, 278, 289, 677, 1307
GluI	GCNGC	9 cut(s)	37, 178, 181, 286, 330, 341, 683, 978, 1304
GsuI	CTGGAG	1 cut(s)	1076
HaeII	RGCGCY	3 cut(s)	85, 291, 1309
HaeIII	GGCC	4 cut(s)	189, 884, 1149, 1249
HapII	CCGG	7 cut(s)	94, 145, 297, 309, 417, 563, 1298
HgaI	GACGC	2 cut(s)	233, 263
HhaI	GCGC	7 cut(s)	84, 140, 177, 279, 290, 678, 1308
Hin1I	GRCGYC	1 cut(s)	288
Hin1II	CATG	8 cut(s)	238, 502, 554, 720, 734, 851, 1085, 1297
Hin6I	GCGC	7 cut(s)	82, 138, 175, 277, 288, 676, 1306
HinP1I	GCGC	7 cut(s)	82, 138, 175, 277, 288, 676, 1306
HincII	GTYRAC	1 cut(s)	635
HindII	GTYRAC	1 cut(s)	635
HinfI	GANTC	3 cut(s)	151, 197, 245
HpaII	CCGG	7 cut(s)	94, 145, 297, 309, 417, 563, 1298
HphI	GGTGA	4 cut(s)	431, 713, 917, 1151
Hpy166II	GTNNAC	2 cut(s)	371, 635
Hpy188I	TCNGA	7 cut(s)	159, 250, 519, 838, 859, 933, 1313
Hpy8I	GTNNAC	2 cut(s)	371, 635
Hpy99I	CGWCG	5 cut(s)	227, 254, 257, 329, 767
HpyAV	CCTTC	3 cut(s)	1066, 1260, 1277
HpyCH4III	ACNGT	3 cut(s)	998, 1008, 1163
HpyCH4IV	ACGT	3 cut(s)	68, 585, 1038
HpyCH4V	TGCA	9 cut(s)	36, 55, 117, 343, 476, 707, 716, 851, 1022
HpyF10VI	GCNNNNNNNGC	8 cut(s)	90, 186, 285, 326, 682, 713, 977, 1303
HpyF3I	CTNAG	3 cut(s)	359, 620, 945
HpySE526I	ACGT	3 cut(s)	68, 585, 1038
Hsp92I	GRCGYC	1 cut(s)	288
Hsp92II	CATG	8 cut(s)	238, 502, 554, 720, 734, 851, 1085, 1297
HspAI	GCGC	7 cut(s)	82, 138, 175, 277, 288, 676, 1306
KasI	GGCGCC	1 cut(s)	287
Kpn2I	TCCGGA	1 cut(s)	562
KroI	GCCGGC	1 cut(s)	308
KroNI	GCCGGC	1 cut(s)	310
Ksp22I	TGATCA	2 cut(s)	501, 829
Kzo9I	GATC	6 cut(s)	166, 403, 492, 501, 514, 829
LguI	GCTCTTC	1 cut(s)	264
LmnI	GCTCC	3 cut(s)	89, 172, 1300
Lsp1109I	GCAGC	5 cut(s)	48, 192, 327, 694, 989
LweI	GCATC	6 cut(s)	42, 422, 552, 556, 694, 783
MaeI	CTAG	2 cut(s)	686, 1050
MaeII	ACGT	3 cut(s)	68, 585, 1038
MaeIII	GTNAC	2 cut(s)	586, 593
MalI	GATC	6 cut(s)	168, 405, 494, 503, 516, 831
MboI	GATC	6 cut(s)	166, 403, 492, 501, 514, 829
MboII	GAAGA	8 cut(s)	34, 146, 251, 448, 478, 538, 584, 1158
MfeI	CAATTG	2 cut(s)	46, 271
MflI	RGATCY	1 cut(s)	514
MhlI	GDGCHC	1 cut(s)	207
Mly113I	GGCGCC	1 cut(s)	288
MlyI	GAGTC	2 cut(s)	206, 239
MmeI	TCCRAC	2 cut(s)	273, 1021
MroI	TCCGGA	1 cut(s)	562
MroNI	GCCGGC	1 cut(s)	308
MseI	TTAA	6 cut(s)	192, 381, 510, 582, 1152, 1227
MslI	CAYNNNNRTG	2 cut(s)	564, 789
MspCI	CTTAAG	1 cut(s)	191
MspI	CCGG	7 cut(s)	94, 145, 297, 309, 417, 563, 1298
MunI	CAATTG	2 cut(s)	46, 271
Mva1269I	GAATGC	1 cut(s)	1022
MvnI	CGCG	1 cut(s)	177
MwoI	GCNNNNNNNGC	8 cut(s)	90, 186, 285, 326, 682, 713, 977, 1303
NaeI	GCCGGC	1 cut(s)	310
NarI	GGCGCC	1 cut(s)	288
NdeII	GATC	6 cut(s)	166, 403, 492, 501, 514, 829
NgoMIV	GCCGGC	1 cut(s)	308
NheI	GCTAGC	1 cut(s)	685
NlaIII	CATG	8 cut(s)	238, 502, 554, 720, 734, 851, 1085, 1297
NlaIV	GGNNCC	6 cut(s)	289, 301, 796, 1176, 1187, 1265
NmeAIII	GCCGAG	2 cut(s)	210, 358
NmuCI	GTSAC	1 cut(s)	593
NspI	RCATGY	3 cut(s)	238, 851, 1297
PagI	TCATGA	1 cut(s)	498
PaqCI	CACCTGC	1 cut(s)	221
PceI	AGGCCT	1 cut(s)	1249
PciSI	GCTCTTC	1 cut(s)	264
PcsI	WCGNNNNNNNCGW	2 cut(s)	330, 643
PctI	GAATGC	1 cut(s)	1022
PdiI	GCCGGC	1 cut(s)	310
PfeI	GAWTC	1 cut(s)	151
PinAI	ACCGGT	1 cut(s)	296
PkrI	GCNGC	9 cut(s)	38, 179, 182, 287, 331, 342, 684, 979, 1305
Ple19I	CGATCG	1 cut(s)	169
PleI	GAGTC	2 cut(s)	205, 239
PluTI	GGCGCC	1 cut(s)	291
PpsI	GAGTC	2 cut(s)	205, 239
PshAI	GACNNNNGTC	1 cut(s)	630
Psp1406I	AACGTT	1 cut(s)	585
PspN4I	GGNNCC	6 cut(s)	289, 301, 796, 1176, 1187, 1265
PspPI	GGNCC	1 cut(s)	1185
PsuI	RGATCY	1 cut(s)	514
PvuI	CGATCG	1 cut(s)	169
RsaI	GTAC	4 cut(s)	462, 804, 1137, 1292
RsaNI	GTAC	4 cut(s)	461, 803, 1136, 1291
RseI	CAYNNNNRTG	2 cut(s)	564, 789
SapI	GCTCTTC	1 cut(s)	264
SaqAI	TTAA	6 cut(s)	192, 381, 510, 582, 1152, 1227
SatI	GCNGC	9 cut(s)	37, 178, 181, 286, 330, 341, 683, 978, 1304
Sau3AI	GATC	6 cut(s)	166, 403, 492, 501, 514, 829
Sau96I	GGNCC	1 cut(s)	1185
SchI	GAGTC	2 cut(s)	206, 239
SduI	GDGCHC	1 cut(s)	207
SfaNI	GCATC	6 cut(s)	42, 422, 552, 556, 694, 783
SfoI	GGCGCC	1 cut(s)	289
SinI	GGWCC	1 cut(s)	1185
SmiMI	CAYNNNNRTG	2 cut(s)	564, 789
SmlI	CTYRAG	2 cut(s)	191, 814
SmoI	CTYRAG	2 cut(s)	191, 814
SpeI	ACTAGT	1 cut(s)	1049
SseBI	AGGCCT	1 cut(s)	1249
SsiI	CCGC	4 cut(s)	177, 285, 330, 680
SspDI	GGCGCC	1 cut(s)	287
SspMI	CTAG	2 cut(s)	686, 1050
StuI	AGGCCT	1 cut(s)	1249
TaaI	ACNGT	3 cut(s)	998, 1008, 1163
TaiI	ACGT	3 cut(s)	71, 588, 1041
TaqI	TCGA	5 cut(s)	165, 222, 762, 1026, 1215
TatI	WGTACW	2 cut(s)	802, 1290
TauI	GCSGC	3 cut(s)	180, 288, 332
TfiI	GAWTC	1 cut(s)	151
Tru1I	TTAA	6 cut(s)	192, 381, 510, 582, 1152, 1227
Tru9I	TTAA	6 cut(s)	192, 381, 510, 582, 1152, 1227
TscAI	CASTG	2 cut(s)	31, 1003
TseFI	GTSAC	1 cut(s)	593
TseI	GCWGC	6 cut(s)	36, 180, 340, 682, 977, 1303
Tsp45I	GTSAC	1 cut(s)	593
TspDTI	ATGAA	7 cut(s)	17, 500, 548, 567, 719, 773, 1187
TspGWI	ACGGA	1 cut(s)	361
TspRI	CASTG	2 cut(s)	31, 1003
Vha464I	CTTAAG	1 cut(s)	191
VpaK11BI	GGWCC	1 cut(s)	1185
XapI	RAATTY	5 cut(s)	98, 554, 758, 780, 820
XceI	RCATGY	3 cut(s)	238, 851, 1297
XspI	CTAG	2 cut(s)	686, 1050

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.