Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0002242

Physical Location & Seq

Genomic Coordinates Forward (+)

37530308 .. 37533031

Gene Structure 2724 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013735

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGGTTCGGTCTCAGATGGCGGAAATGGCTGTGCAGGCACCGTTGATGAGGCTTCTTGTGGCTTGGATGTAAGGGGATTCATCCCTGGATCTACCTATGGTGCAAGGGACGTCTTGATAGTGGCGCATGACGATGTTCTACGGCGAGGTGAAGAAACCTCCCCCCTAAAGCGCTCCAAGTTTCAGAAATTCCTTGACAACTTCTGCAAAGCAAGTGATTGCTTCAGTGCAATCCGGCTGATTCTTCTGAACCTCGATCGGAAGCGCGGTAGCTATGGCCTTAAGGAGTCGGTGCTAGTAATTTCACCCTCGCCGTCGCCAAGGTTAGTTAAGGTGCCGCAACGGAGACAGGGACTTAGTTCAGGTGGACTAATGATTAAGGAGTTGAAAGACTTGCTTGATCGTTTGGCATCAGGTAAAAATAGGTATGTTGCTTTTGTCCTAGTTCTTAATGAGCTTGGCATTAAAGTTGGAAAAGCTGTGAGCCCGCAGCTGGCTATGAGAGTTGGTGATGCAACTGGTGCATGGAATCGAAGTACATTACTTCTCAAGGTAGAGGCCTCTTATATGAATACACAAGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000726 GO:0003674 GO:0003824 GO:0003909 GO:0003910 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005911 GO:0006139 GO:0006259 GO:0006266 GO:0006281 GO:0006289 GO:0006297 GO:0006302 GO:0006303 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009314 GO:0009506 GO:0009628 GO:0009987 GO:0010165 GO:0010212 GO:0016874 GO:0016886 GO:0030054 GO:0032807 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048046 GO:0050896 GO:0051103 GO:0051716 GO:0055044 GO:0071704 GO:0090304 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03450 map03450

Pfam Domains

Protein Families

BRCT_2 DNA_ligase_A_C DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_IV

Protein Analysis

195

Amino Acids

20.96

Weight (kDa)

9.59

Isoelectric Point (pI)

34.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002242)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57160 AT5G57160
fragaria_vesca	FvH4_4g07160
malus_domestica	MD16G1247900.v1.1
prunus_persica	Prupe.1G074600_v2.0.a1 Prupe.1G074600_v2.0.a1
pyrus_communis	pycom12g16110 pycom12g16210 pycom16g20800
rosa_chinensis	RchiOBHm_Chr0c22g0500591 RchiOBHm_Chr4g0399311 RchiOBHm_Chr5g0052491 RchiOBHm_Chr7g0206661
rosa_laevigata	RLG00000009274 RLG00000012027 RLG00000013478 RLG00000013735 RLG00000034678
rosa_multiflora	Rmu_co8101330.1_g000001 Rmu_co8329359.1_g000001 Rmu_sc0000924.1_g000031 Rmu_sc0003135.1_g000008
rosa_roxburghii	Rroxscaffold_4G00283390 Rroxscaffold_4G00329320 Rroxscaffold_5G00344240
rosa_rugosa	Rorug04G0016500
rosa_samantha	Rh2AG218900 Rh2BG192100 Rh2BG230700 Rh2CG361900 Rh2DG225100 Rh3BG254200 Rh3DG357600 Rh4AG094200 Rh4AG102100 Rh4BG091600 Rh4CG102400 Rh4CG110300 Rh4DG086300 Rh7DG237100 Rh7DG335000 Rh7DG335200
rosa_wichuraiana	Rw4G007730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	114
AccB1I	GGYRCC	2 cut(s)	38, 334
AccII	CGCG	1 cut(s)	267
AciI	CCGC	4 cut(s)	21, 267, 338, 488
AclWI	GGATC	1 cut(s)	97
AcsI	RAATTY	1 cut(s)	188
AcuI	CTGAAG	1 cut(s)	208
AcyI	GRCGYC	1 cut(s)	111
AfaI	GTAC	1 cut(s)	538
AfeI	AGCGCT	1 cut(s)	173
AfiI	CCNNNNNNNGG	1 cut(s)	493
AflII	CTTAAG	1 cut(s)	281
AgsI	TTSAA	1 cut(s)	388
AjnI	CCWGG	1 cut(s)	85
AluBI	AGCT	4 cut(s)	273, 457, 479, 493
AluI	AGCT	4 cut(s)	273, 457, 479, 493
Alw26I	GTCTC	2 cut(s)	16, 340
AlwI	GGATC	1 cut(s)	97
Aor51HI	AGCGCT	1 cut(s)	173
AoxI	GGCC	2 cut(s)	277, 558
ApeKI	GCWGC	1 cut(s)	490
ApoI	RAATTY	1 cut(s)	188
AspLEI	GCGC	3 cut(s)	127, 174, 267
AsuHPI	GGTGA	3 cut(s)	161, 297, 521
BanI	GGYRCC	2 cut(s)	38, 334
BanII	GRGCYC	1 cut(s)	488
BbvI	GCAGC	1 cut(s)	502
BccI	CCATC	1 cut(s)	11
BceAI	ACGGC	2 cut(s)	158, 298
BciT130I	CCWGG	1 cut(s)	87
BcoDI	GTCTC	2 cut(s)	16, 340
BfaI	CTAG	3 cut(s)	296, 443, 583
BfoI	RGCGCY	1 cut(s)	175
BfrI	CTTAAG	1 cut(s)	281
BisI	GCNGC	2 cut(s)	338, 491
BlsI	GCNGC	2 cut(s)	339, 492
Bme1390I	CCNGG	1 cut(s)	87
BmiI	GGNNCC	2 cut(s)	40, 336
BmrFI	CCNGG	1 cut(s)	87
BmsI	GCATC	2 cut(s)	419, 502
BpuEI	CTTGAG	1 cut(s)	533
BsaHI	GRCGYC	1 cut(s)	111
BsaI	GGTCTC	1 cut(s)	16
BsaJI	CCNNGG	2 cut(s)	85, 320
Bsc4I	CCNNNNNNNGG	1 cut(s)	493
Bse1I	ACTGG	1 cut(s)	523
BseBI	CCWGG	1 cut(s)	87
BseDI	CCNNGG	2 cut(s)	85, 320
BseGI	GGATG	2 cut(s)	73, 81
BseLI	CCNNNNNNNGG	1 cut(s)	493
BseMII	CTCAG	1 cut(s)	27
BseNI	ACTGG	1 cut(s)	523
BseXI	GCAGC	1 cut(s)	502
BsgI	GTGCAG	1 cut(s)	54
Bsh1236I	CGCG	1 cut(s)	267
Bsh1285I	CGRYCG	1 cut(s)	259
BshFI	GGCC	2 cut(s)	279, 560
BshNI	GGYRCC	2 cut(s)	38, 334
BsiEI	CGRYCG	1 cut(s)	259
BsiSI	CCGG	1 cut(s)	235
BslFI	GGGAC	2 cut(s)	122, 366
BslI	CCNNNNNNNGG	1 cut(s)	493
BsmAI	GTCTC	2 cut(s)	16, 340
BsmFI	GGGAC	2 cut(s)	122, 366
BsnI	GGCC	2 cut(s)	279, 560
Bso31I	GGTCTC	1 cut(s)	16
Bsp1286I	GDGCHC	1 cut(s)	488
Bsp143I	GATC	3 cut(s)	89, 256, 400
BspACI	CCGC	4 cut(s)	21, 267, 338, 488
BspANI	GGCC	2 cut(s)	279, 560
BspCNI	CTCAG	1 cut(s)	26
BspFNI	CGCG	1 cut(s)	267
BspLI	GGNNCC	2 cut(s)	40, 336
BspPI	GGATC	1 cut(s)	97
BspT107I	GGYRCC	2 cut(s)	38, 334
BspTI	CTTAAG	1 cut(s)	281
BspTNI	GGTCTC	1 cut(s)	16
BsrI	ACTGG	1 cut(s)	523
BssECI	CCNNGG	2 cut(s)	85, 320
BssMI	GATC	3 cut(s)	89, 256, 400
BssNI	GRCGYC	1 cut(s)	111
BssT1I	CCWWGG	1 cut(s)	320
Bst2UI	CCWGG	1 cut(s)	87
Bst4CI	ACNGT	1 cut(s)	43
BstACI	GRCGYC	1 cut(s)	111
BstAFI	CTTAAG	1 cut(s)	281
BstAPI	GCANNNNNTGC	1 cut(s)	521
BstC8I	GCNNGC	3 cut(s)	37, 488, 495
BstDEI	CTNAG	2 cut(s)	13, 356
BstF5I	GGATG	2 cut(s)	73, 81
BstFNI	CGCG	1 cut(s)	267
BstH2I	RGCGCY	1 cut(s)	175
BstHHI	GCGC	3 cut(s)	127, 174, 267
BstKTI	GATC	3 cut(s)	92, 259, 403
BstMAI	GTCTC	2 cut(s)	16, 340
BstMBI	GATC	3 cut(s)	89, 256, 400
BstMCI	CGRYCG	1 cut(s)	259
BstMWI	GCNNNNNNNGC	3 cut(s)	27, 36, 521
BstNI	CCWGG	1 cut(s)	87
BstSCI	CCNGG	1 cut(s)	85
BstUI	CGCG	1 cut(s)	267
BstV1I	GCAGC	1 cut(s)	502
BstX2I	RGATCY	1 cut(s)	89
BstYI	RGATCY	1 cut(s)	89
BsuRI	GGCC	2 cut(s)	279, 560
BtsCI	GGATG	2 cut(s)	73, 81
BtsIMutI	CAGTG	1 cut(s)	232
Cac8I	GCNNGC	3 cut(s)	37, 488, 495
CfoI	GCGC	3 cut(s)	127, 174, 267
Csp6I	GTAC	1 cut(s)	537
CviAII	CATG	2 cut(s)	128, 525
CviQI	GTAC	1 cut(s)	537
DdeI	CTNAG	2 cut(s)	13, 356
DpnI	GATC	3 cut(s)	91, 258, 402
DpnII	GATC	3 cut(s)	89, 256, 400
EciI	GGCGGA	1 cut(s)	36
Eco130I	CCWWGG	1 cut(s)	320
Eco147I	AGGCCT	1 cut(s)	560
Eco24I	GRGCYC	1 cut(s)	488
Eco31I	GGTCTC	1 cut(s)	16
Eco47III	AGCGCT	1 cut(s)	173
Eco57I	CTGAAG	1 cut(s)	208
EcoRII	CCWGG	1 cut(s)	85
EcoT14I	CCWWGG	1 cut(s)	320
EcoT38I	GRGCYC	1 cut(s)	488
ErhI	CCWWGG	1 cut(s)	320
FaeI	CATG	2 cut(s)	131, 528
FaiI	YATR	8 cut(s)	99, 129, 276, 429, 500, 526, 567, 569
FalI	AAGNNNNNCTT	2 cut(s)	381, 413
FaqI	GGGAC	2 cut(s)	122, 366
FatI	CATG	2 cut(s)	127, 524
FauI	CCCGC	1 cut(s)	495
Fnu4HI	GCNGC	2 cut(s)	338, 491
FokI	GGATG	2 cut(s)	68, 80
FriOI	GRGCYC	1 cut(s)	488
Fsp4HI	GCNGC	2 cut(s)	338, 491
FspBI	CTAG	3 cut(s)	296, 443, 583
GlaI	GCGC	3 cut(s)	126, 173, 266
GluI	GCNGC	2 cut(s)	338, 491
HaeII	RGCGCY	1 cut(s)	175
HaeIII	GGCC	2 cut(s)	279, 560
HapII	CCGG	1 cut(s)	235
HhaI	GCGC	3 cut(s)	127, 174, 267
Hin1I	GRCGYC	1 cut(s)	111
Hin1II	CATG	2 cut(s)	131, 528
Hin6I	GCGC	3 cut(s)	125, 172, 265
HinP1I	GCGC	3 cut(s)	125, 172, 265
HinfI	GANTC	4 cut(s)	78, 241, 287, 529
HpaII	CCGG	1 cut(s)	235
HphI	GGTGA	3 cut(s)	161, 297, 521
Hpy166II	GTNNAC	1 cut(s)	368
Hpy188I	TCNGA	4 cut(s)	16, 186, 249, 261
Hpy188III	TCNNGA	1 cut(s)	115
Hpy8I	GTNNAC	1 cut(s)	368
Hpy99I	CGWCG	1 cut(s)	319
HpyCH4III	ACNGT	1 cut(s)	43
HpyCH4IV	ACGT	1 cut(s)	111
HpyCH4V	TGCA	6 cut(s)	35, 104, 207, 230, 515, 524
HpyF10VI	GCNNNNNNNGC	3 cut(s)	27, 36, 521
HpyF3I	CTNAG	2 cut(s)	13, 356
HpySE526I	ACGT	1 cut(s)	111
Hsp92I	GRCGYC	1 cut(s)	111
Hsp92II	CATG	2 cut(s)	131, 528
HspAI	GCGC	3 cut(s)	125, 172, 265
Kzo9I	GATC	3 cut(s)	89, 256, 400
LmnI	GCTCC	1 cut(s)	179
LpnPI	CCDG	9 cut(s)	21, 72, 99, 248, 335, 348, 399, 479, 504
Lsp1109I	GCAGC	1 cut(s)	502
LweI	GCATC	2 cut(s)	419, 502
MaeI	CTAG	3 cut(s)	296, 443, 583
MaeII	ACGT	1 cut(s)	111
MalI	GATC	3 cut(s)	91, 258, 402
MboI	GATC	3 cut(s)	89, 256, 400
MboII	GAAGA	2 cut(s)	164, 236
MflI	RGATCY	1 cut(s)	89
MhlI	GDGCHC	1 cut(s)	488
MluCI	AATT	2 cut(s)	188, 300
MlyI	GAGTC	1 cut(s)	296
MmeI	TCCRAC	1 cut(s)	451
MnlI	CCTC	7 cut(s)	43, 140, 169, 263, 319, 550, 571
MseI	TTAA	5 cut(s)	282, 330, 378, 450, 465
MslI	CAYNNNNRTG	1 cut(s)	132
MspA1I	CMGCKG	1 cut(s)	493
MspCI	CTTAAG	1 cut(s)	281
MspI	CCGG	1 cut(s)	235
MspR9I	CCNGG	1 cut(s)	87
MvaI	CCWGG	1 cut(s)	87
MvnI	CGCG	1 cut(s)	267
MwoI	GCNNNNNNNGC	3 cut(s)	27, 36, 521
NdeII	GATC	3 cut(s)	89, 256, 400
NlaIII	CATG	2 cut(s)	131, 528
NlaIV	GGNNCC	2 cut(s)	40, 336
PceI	AGGCCT	1 cut(s)	560
PfeI	GAWTC	3 cut(s)	78, 241, 529
PkrI	GCNGC	2 cut(s)	339, 492
Ple19I	CGATCG	1 cut(s)	259
PleI	GAGTC	1 cut(s)	295
PpsI	GAGTC	1 cut(s)	295
Psp6I	CCWGG	1 cut(s)	85
PspGI	CCWGG	1 cut(s)	85
PspN4I	GGNNCC	2 cut(s)	40, 336
PsuI	RGATCY	1 cut(s)	89
PvuI	CGATCG	1 cut(s)	259
PvuII	CAGCTG	1 cut(s)	493
RsaI	GTAC	1 cut(s)	538
RsaNI	GTAC	1 cut(s)	537
RseI	CAYNNNNRTG	1 cut(s)	132
SaqAI	TTAA	5 cut(s)	282, 330, 378, 450, 465
SatI	GCNGC	2 cut(s)	338, 491
Sau3AI	GATC	3 cut(s)	89, 256, 400
SchI	GAGTC	1 cut(s)	296
ScrFI	CCNGG	1 cut(s)	87
SduI	GDGCHC	1 cut(s)	488
SfaNI	GCATC	2 cut(s)	419, 502
SmiMI	CAYNNNNRTG	1 cut(s)	132
SmlI	CTYRAG	2 cut(s)	281, 548
SmoI	CTYRAG	2 cut(s)	281, 548
Sse9I	AATT	2 cut(s)	188, 300
SseBI	AGGCCT	1 cut(s)	560
SsiI	CCGC	4 cut(s)	21, 267, 338, 488
SspMI	CTAG	3 cut(s)	296, 443, 583
StuI	AGGCCT	1 cut(s)	560
StyD4I	CCNGG	1 cut(s)	85
StyI	CCWWGG	1 cut(s)	320
TaaI	ACNGT	1 cut(s)	43
TaiI	ACGT	1 cut(s)	114
TaqI	TCGA	2 cut(s)	255, 532
TasI	AATT	2 cut(s)	188, 300
TatI	WGTACW	1 cut(s)	536
TauI	GCSGC	1 cut(s)	340
TfiI	GAWTC	3 cut(s)	78, 241, 529
Tru1I	TTAA	5 cut(s)	282, 330, 378, 450, 465
Tru9I	TTAA	5 cut(s)	282, 330, 378, 450, 465
TscAI	CASTG	1 cut(s)	232
TseI	GCWGC	1 cut(s)	490
TspDTI	ATGAA	2 cut(s)	70, 584
TspGWI	ACGGA	1 cut(s)	358
TspRI	CASTG	1 cut(s)	232
Vha464I	CTTAAG	1 cut(s)	281
XapI	RAATTY	1 cut(s)	188
XspI	CTAG	3 cut(s)	296, 443, 583
ZraI	GACGTC	1 cut(s)	112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.