Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8329359.1

Orthogroup ID

OG0002242

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 911

Gene Structure 911 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8329359.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 536 bp

gaatagaaagtctgaaatgcataggtcgtgtggaccttacacttgttggttcatttgcagatatgattttacttccagctgctggtgcaatggagaacggtgagacattgctattcactttgacaaatcagggacaactgcatgtctatgacaaggcttgctggtctgccttaatgtctcaccaaaagaaaaggactgatgggactgcagtgcagtatcctatgtttatacctactactgaaccatgtatgacagtggcaaagcttgctttggtggatagagatgggaaatactcctcagctttgtccaaggaagtttcagttgacaagtctaatgcgaaacacactttgaagaaggggggtgcaaagtggcctttgactggtggtgtccccagccaactttctgatgctgaaaattttcatgtcgagagactatatgtagcaggatatcaagatggatctgttcgaatatgggatgccacctatccaactccgtcgcttatatatgctataggtcctgagtgtactcgagactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0002791 GO:0002792 GO:0002793 GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0008047 GO:0008150 GO:0010646 GO:0010648 GO:0010817 GO:0016020 GO:0017016 GO:0017137 GO:0017157 GO:0019899 GO:0019905 GO:0023051 GO:0023057 GO:0030234 GO:0030695 GO:0031267 GO:0032879 GO:0032880 GO:0033500 GO:0042592 GO:0042593 GO:0043085 GO:0043087 GO:0043547 GO:0044093 GO:0044424 GO:0044464 GO:0046676 GO:0046883 GO:0046888 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048878 GO:0050708 GO:0050709 GO:0050714 GO:0050789 GO:0050790 GO:0050794 GO:0050796 GO:0051020 GO:0051046 GO:0051047 GO:0051048 GO:0051049 GO:0051050 GO:0051051 GO:0051222 GO:0051223 GO:0051224 GO:0051336 GO:0051345 GO:0060589 GO:0060627 GO:0065007 GO:0065008 GO:0065009 GO:0070201 GO:0071944 GO:0090087 GO:0090276 GO:0090278 GO:0098772 GO:1903530 GO:1903531 GO:1903532 GO:1904950 GO:1904951

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANAPC4_WD40 Synaptobrevin

Protein Analysis

177

Amino Acids

19.3

Weight (kDa)

6.47

Isoelectric Point (pI)

30.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002242)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57160 AT5G57160
fragaria_vesca	FvH4_4g07160
malus_domestica	MD16G1247900.v1.1
prunus_persica	Prupe.1G074600_v2.0.a1 Prupe.1G074600_v2.0.a1
pyrus_communis	pycom12g16110 pycom12g16210 pycom16g20800
rosa_chinensis	RchiOBHm_Chr0c22g0500591 RchiOBHm_Chr4g0399311 RchiOBHm_Chr5g0052491 RchiOBHm_Chr7g0206661
rosa_laevigata	RLG00000009274 RLG00000012027 RLG00000013478 RLG00000013735 RLG00000034678
rosa_multiflora	Rmu_co8101330.1_g000001 Rmu_co8329359.1_g000001 Rmu_sc0000924.1_g000031 Rmu_sc0003135.1_g000008
rosa_roxburghii	Rroxscaffold_4G00283390 Rroxscaffold_4G00329320 Rroxscaffold_5G00344240
rosa_rugosa	Rorug04G0016500
rosa_samantha	Rh2AG218900 Rh2BG192100 Rh2BG230700 Rh2CG361900 Rh2DG225100 Rh3BG254200 Rh3DG357600 Rh4AG094200 Rh4AG102100 Rh4BG091600 Rh4CG102400 Rh4CG110300 Rh4DG086300 Rh7DG237100 Rh7DG335000 Rh7DG335200
rosa_wichuraiana	Rw4G007730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	82
AclWI	GGATC	1 cut(s)	465
AcsI	RAATTY	1 cut(s)	414
AfaI	GTAC	1 cut(s)	525
AfiI	CCNNNNNNNGG	2 cut(s)	82, 379
AgsI	TTSAA	1 cut(s)	351
AluBI	AGCT	3 cut(s)	79, 264, 301
AluI	AGCT	3 cut(s)	79, 264, 301
Alw26I	GTCTC	4 cut(s)	97, 182, 423, 524
AlwI	GGATC	1 cut(s)	465
AlwNI	CAGNNNCTG	1 cut(s)	82
Ama87I	CYCGRG	1 cut(s)	527
AoxI	GGCC	1 cut(s)	370
ApeKI	GCWGC	1 cut(s)	79
ApoI	RAATTY	1 cut(s)	414
Asp700I	GAANNNNTTC	1 cut(s)	416
AspS9I	GGNCC	2 cut(s)	33, 514
AsuHPI	GGTGA	2 cut(s)	112, 172
AsuII	TTCGAA	1 cut(s)	465
AvaI	CYCGRG	1 cut(s)	527
AvaII	GGWCC	2 cut(s)	33, 514
BbvCI	CCTCAGC	1 cut(s)	297
BbvI	GCAGC	1 cut(s)	66
BccI	CCATC	3 cut(s)	193, 277, 448
BciVI	GTATCC	1 cut(s)	227
BcoDI	GTCTC	4 cut(s)	97, 182, 423, 524
BfmI	CTRYAG	2 cut(s)	206, 509
BfuI	GTATCC	1 cut(s)	227
BisI	GCNGC	1 cut(s)	80
BlsI	GCNGC	1 cut(s)	81
Bme18I	GGWCC	2 cut(s)	33, 514
BmeT110I	CYCGRG	1 cut(s)	527
BmgT120I	GGNCC	2 cut(s)	33, 514
BmsI	GCATC	2 cut(s)	396, 465
Bpu10I	CCTNAGC	1 cut(s)	297
Bpu14I	TTCGAA	1 cut(s)	465
BsaJI	CCNNGG	1 cut(s)	308
Bsc4I	CCNNNNNNNGG	2 cut(s)	82, 379
Bse1I	ACTGG	1 cut(s)	384
Bse3DI	GCAATG	2 cut(s)	95, 106
BseDI	CCNNGG	1 cut(s)	308
BseGI	GGATG	1 cut(s)	480
BseLI	CCNNNNNNNGG	2 cut(s)	82, 379
BseMI	GCAATG	2 cut(s)	95, 106
BseMII	CTCAG	2 cut(s)	311, 509
BseNI	ACTGG	1 cut(s)	384
BseRI	GAGGAG	1 cut(s)	285
BseXI	GCAGC	1 cut(s)	66
BseYI	CCCAGC	1 cut(s)	391
BsgI	GTGCAG	1 cut(s)	232
BshFI	GGCC	1 cut(s)	372
BsiHKCI	CYCGRG	1 cut(s)	527
BslFI	GGGAC	3 cut(s)	146, 216, 373
BslI	CCNNNNNNNGG	2 cut(s)	82, 379
BsmAI	GTCTC	4 cut(s)	97, 182, 423, 524
BsmFI	GGGAC	3 cut(s)	146, 216, 373
BsnI	GGCC	1 cut(s)	372
BsoBI	CYCGRG	1 cut(s)	527
Bsp119I	TTCGAA	1 cut(s)	465
Bsp143I	GATC	1 cut(s)	457
BspANI	GGCC	1 cut(s)	372
BspCNI	CTCAG	2 cut(s)	310, 510
BspMAI	CTGCAG	1 cut(s)	210
BspPI	GGATC	1 cut(s)	465
BspT104I	TTCGAA	1 cut(s)	465
BsrDI	GCAATG	2 cut(s)	95, 106
BsrI	ACTGG	1 cut(s)	384
BssECI	CCNNGG	1 cut(s)	308
BssMI	GATC	1 cut(s)	457
BssT1I	CCWWGG	1 cut(s)	308
Bst4CI	ACNGT	2 cut(s)	100, 255
BstAPI	GCANNNNNTGC	1 cut(s)	265
BstBI	TTCGAA	1 cut(s)	465
BstC8I	GCNNGC	2 cut(s)	159, 266
BstDEI	CTNAG	2 cut(s)	297, 518
BstF5I	GGATG	1 cut(s)	480
BstKTI	GATC	1 cut(s)	460
BstMAI	GTCTC	4 cut(s)	97, 182, 423, 524
BstMBI	GATC	1 cut(s)	457
BstMWI	GCNNNNNNNGC	2 cut(s)	85, 265
BstNSI	RCATGY	1 cut(s)	145
BstSFI	CTRYAG	2 cut(s)	206, 509
BstV1I	GCAGC	1 cut(s)	66
BstX2I	RGATCY	1 cut(s)	457
BstYI	RGATCY	1 cut(s)	457
BsuI	GTATCC	1 cut(s)	227
BsuRI	GGCC	1 cut(s)	372
BtsCI	GGATG	1 cut(s)	480
BtsI	GCAGTG	1 cut(s)	215
BtsIMutI	CAGTG	2 cut(s)	215, 260
Cac8I	GCNNGC	2 cut(s)	159, 266
CaiI	CAGNNNCTG	1 cut(s)	82
Cfr13I	GGNCC	2 cut(s)	33, 514
Csp6I	GTAC	1 cut(s)	524
CviAII	CATG	3 cut(s)	142, 245, 421
CviJI	RGCY	6 cut(s)	79, 157, 264, 301, 372, 395
CviKI_1	RGCY	6 cut(s)	79, 157, 264, 301, 372, 395
CviQI	GTAC	1 cut(s)	524
DdeI	CTNAG	2 cut(s)	297, 518
DpnI	GATC	1 cut(s)	459
DpnII	GATC	1 cut(s)	457
Eco130I	CCWWGG	1 cut(s)	308
Eco32I	GATATC	1 cut(s)	448
Eco47I	GGWCC	2 cut(s)	33, 514
Eco88I	CYCGRG	1 cut(s)	527
EcoO109I	RGGNCCY	1 cut(s)	514
EcoRV	GATATC	1 cut(s)	448
EcoT14I	CCWWGG	1 cut(s)	308
EcoT22I	ATGCAT	1 cut(s)	22
ErhI	CCWWGG	1 cut(s)	308
FaeI	CATG	3 cut(s)	145, 248, 424
FaqI	GGGAC	3 cut(s)	146, 216, 373
FatI	CATG	3 cut(s)	141, 244, 420
Fnu4HI	GCNGC	1 cut(s)	80
FokI	GGATG	1 cut(s)	487
Fsp4HI	GCNGC	1 cut(s)	80
GluI	GCNGC	1 cut(s)	80
GsaI	CCCAGC	1 cut(s)	395
HaeIII	GGCC	1 cut(s)	372
Hin1II	CATG	3 cut(s)	145, 248, 424
HincII	GTYRAC	1 cut(s)	324
HindII	GTYRAC	1 cut(s)	324
HindIII	AAGCTT	1 cut(s)	262
HphI	GGTGA	2 cut(s)	112, 172
Hpy166II	GTNNAC	3 cut(s)	33, 324, 524
Hpy188I	TCNGA	2 cut(s)	14, 405
Hpy188III	TCNNGA	4 cut(s)	426, 451, 517, 529
Hpy8I	GTNNAC	3 cut(s)	33, 324, 524
Hpy99I	CGWCG	1 cut(s)	498
HpyAV	CCTTC	1 cut(s)	348
HpyCH4III	ACNGT	2 cut(s)	100, 255
HpyCH4V	TGCA	7 cut(s)	20, 58, 88, 141, 208, 213, 364
HpyF10VI	GCNNNNNNNGC	2 cut(s)	85, 265
HpyF3I	CTNAG	2 cut(s)	297, 518
Hsp92II	CATG	3 cut(s)	145, 248, 424
Kzo9I	GATC	1 cut(s)	457
LpnPI	CCDG	8 cut(s)	68, 89, 115, 147, 365, 405, 428, 530
Lsp1109I	GCAGC	1 cut(s)	66
LweI	GCATC	2 cut(s)	396, 465
MalI	GATC	1 cut(s)	459
MboI	GATC	1 cut(s)	457
MboII	GAAGA	1 cut(s)	363
MflI	RGATCY	1 cut(s)	457
MluCI	AATT	1 cut(s)	414
MmeI	TCCRAC	1 cut(s)	511
MnlI	CCTC	1 cut(s)	306
Mph1103I	ATGCAT	1 cut(s)	22
MroXI	GAANNNNTTC	1 cut(s)	416
MseI	TTAA	1 cut(s)	172
MslI	CAYNNNNRTG	1 cut(s)	146
MspA1I	CMGCKG	1 cut(s)	79
MwoI	GCNNNNNNNGC	2 cut(s)	85, 265
NdeII	GATC	1 cut(s)	457
NlaIII	CATG	3 cut(s)	145, 248, 424
NsiI	ATGCAT	1 cut(s)	22
NspI	RCATGY	1 cut(s)	145
NspV	TTCGAA	1 cut(s)	465
PaeR7I	CTCGAG	1 cut(s)	527
PdmI	GAANNNNTTC	1 cut(s)	416
PflMI	CCANNNNNTGG	1 cut(s)	82
PkrI	GCNGC	1 cut(s)	81
PpuMI	RGGWCCY	1 cut(s)	514
Psp5II	RGGWCCY	1 cut(s)	514
PspFI	CCCAGC	1 cut(s)	391
PspPI	GGNCC	2 cut(s)	33, 514
PspPPI	RGGWCCY	1 cut(s)	514
PstI	CTGCAG	1 cut(s)	210
PstNI	CAGNNNCTG	1 cut(s)	82
PsuI	RGATCY	1 cut(s)	457
PvuII	CAGCTG	1 cut(s)	79
RsaI	GTAC	1 cut(s)	525
RsaNI	GTAC	1 cut(s)	524
RseI	CAYNNNNRTG	1 cut(s)	146
SaqAI	TTAA	1 cut(s)	172
SatI	GCNGC	1 cut(s)	80
Sau3AI	GATC	1 cut(s)	457
Sau96I	GGNCC	2 cut(s)	33, 514
SetI	ASST	8 cut(s)	27, 38, 81, 234, 266, 303, 484, 516
SfaNI	GCATC	2 cut(s)	396, 465
SfcI	CTRYAG	2 cut(s)	206, 509
Sfr274I	CTCGAG	1 cut(s)	527
SfuI	TTCGAA	1 cut(s)	465
SinI	GGWCC	2 cut(s)	33, 514
SlaI	CTCGAG	1 cut(s)	527
SmiMI	CAYNNNNRTG	1 cut(s)	146
SmlI	CTYRAG	1 cut(s)	527
SmoI	CTYRAG	1 cut(s)	527
Sse9I	AATT	1 cut(s)	414
StyI	CCWWGG	1 cut(s)	308
TaaI	ACNGT	2 cut(s)	100, 255
TaqI	TCGA	3 cut(s)	425, 465, 528
TasI	AATT	1 cut(s)	414
TatI	WGTACW	1 cut(s)	523
Tru1I	TTAA	1 cut(s)	172
Tru9I	TTAA	1 cut(s)	172
TscAI	CASTG	2 cut(s)	215, 260
TseI	GCWGC	1 cut(s)	79
TspDTI	ATGAA	2 cut(s)	41, 409
TspGWI	ACGGA	1 cut(s)	482
TspRI	CASTG	2 cut(s)	215, 260
Van91I	CCANNNNNTGG	1 cut(s)	82
VpaK11BI	GGWCC	2 cut(s)	33, 514
XapI	RAATTY	1 cut(s)	414
XceI	RCATGY	1 cut(s)	145
XhoI	CTCGAG	1 cut(s)	527
XmnI	GAANNNNTTC	1 cut(s)	416
Zsp2I	ATGCAT	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.