pycom12g16210

WD40 repeats

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0002242
Physical Location & Seq
Reverse (-)
18618401 .. 18618992
592 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g16210.2

Sequence Viewer

Length: 438 bp
ATGTGTTGGTCGTATAGACCTTACCTTTACTGGCTCTTTTGCAGACATGATTTTGTTACCAAGTTCAGGACAACTGGGGGTAATCACAAAGCTGATGTTTTTGTATTAACCAACCCTGGGCAACTGCATCTTTATGATTATGCTACCCTCTCTGCCTTAGTGCCCCAGAAAGAAAGGAATCCATCTGTATCTGCTTTGGAGTTTCCGGTGGTGATACGTACAGTTAATCCAACAGTGACCGTTGCCAAACTTATTAGGGTACCCACTGGGGAGAACTTATTAAAAGCTATATCAGAGATGTCCTCAGTTGGGAACCTTGGCTCAGCACAAACCCAATCAGCTGGTGCAAGATGGCCCTTGACTGGGGGTGTTCCCAGTCAACTGTCTATTTCTGAGAATAATGGTATTGAGAGACTGTACCTAGTGTTACCATTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000137 GO:0000139 GO:0000902 GO:0000904 GO:0002791 GO:0003674 GO:0005096 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005795 GO:0005802 GO:0005856 GO:0005886 GO:0005938 GO:0006810 GO:0006892 GO:0006893 GO:0006996 GO:0007010 GO:0007275 GO:0007399 GO:0007409 GO:0008047 GO:0008150 GO:0009653 GO:0009987 GO:0010008 GO:0012505 GO:0015629 GO:0016020 GO:0016043 GO:0016192 GO:0017016 GO:0017137 GO:0017157 GO:0019899 GO:0019900 GO:0019901 GO:0022008 GO:0022607 GO:0030029 GO:0030030 GO:0030036 GO:0030154 GO:0030182 GO:0030234 GO:0030695 GO:0030863 GO:0030864 GO:0030865 GO:0030866 GO:0031090 GO:0031175 GO:0031267 GO:0031410 GO:0031901 GO:0031982 GO:0031984 GO:0031985 GO:0032501 GO:0032502 GO:0032588 GO:0032879 GO:0032880 GO:0032989 GO:0032990 GO:0043085 GO:0043087 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043547 GO:0043933 GO:0044085 GO:0044093 GO:0044422 GO:0044424 GO:0044430 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0048193 GO:0048468 GO:0048666 GO:0048667 GO:0048699 GO:0048731 GO:0048812 GO:0048856 GO:0048858 GO:0048869 GO:0050708 GO:0050789 GO:0050790 GO:0050794 GO:0051020 GO:0051046 GO:0051049 GO:0051179 GO:0051223 GO:0051234 GO:0051336 GO:0051345 GO:0060589 GO:0060627 GO:0061564 GO:0065003 GO:0065007 GO:0065009 GO:0070201 GO:0071840 GO:0071944 GO:0090087 GO:0097708 GO:0098588 GO:0098772 GO:0098791 GO:0098805 GO:0098876 GO:0099568 GO:0120036 GO:0120039 GO:1903530
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANAPC4_WD40 Synaptobrevin

Protein Analysis

146

Amino Acids

16.06

Weight (kDa)

9.26

Isoelectric Point (pI)

39.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 259
AccB1I GGYRCC 1 cut(s) 259
AfaI GTAC 3 cut(s) 220, 261, 419
AfiI CCNNNNNNNGG 5 cut(s) 66, 117, 309, 362, 363
AjnI CCWGG 1 cut(s) 115
AluBI AGCT 3 cut(s) 92, 287, 341
AluI AGCT 3 cut(s) 92, 287, 341
Alw26I GTCTC 1 cut(s) 406
AoxI GGCC 1 cut(s) 353
Asp718I GGTACC 1 cut(s) 259
AspS9I GGNCC 1 cut(s) 354
AsuHPI GGTGA 1 cut(s) 223
BaeGI GKGCMC 1 cut(s) 165
BanI GGYRCC 1 cut(s) 259
BccI CCATC 2 cut(s) 190, 345
BciT130I CCWGG 1 cut(s) 117
BcoDI GTCTC 1 cut(s) 406
BfaI CTAG 1 cut(s) 422
BlpI GCTNAGC 1 cut(s) 322
Bme1390I CCNGG 1 cut(s) 117
BmgT120I GGNCC 1 cut(s) 354
BmiI GGNNCC 2 cut(s) 261, 314
BmrFI CCNGG 1 cut(s) 117
BmrI ACTGGG 4 cut(s) 84, 276, 369, 372
BmsI GCATC 1 cut(s) 136
BmuI ACTGGG 4 cut(s) 84, 276, 369, 372
BplI GAGNNNNNCTC 2 cut(s) 287, 319
Bpu1102I GCTNAGC 1 cut(s) 322
BsaAI YACGTR 1 cut(s) 218
BsaJI CCNNGG 3 cut(s) 115, 116, 316
BsaWI WCCGGW 1 cut(s) 205
Bsc4I CCNNNNNNNGG 5 cut(s) 66, 117, 309, 362, 363
Bse1I ACTGG 5 cut(s) 35, 79, 271, 367, 375
BseBI CCWGG 1 cut(s) 117
BseDI CCNNGG 3 cut(s) 115, 116, 316
BseLI CCNNNNNNNGG 5 cut(s) 66, 117, 309, 362, 363
BseMII CTCAG 3 cut(s) 318, 336, 384
BseNI ACTGG 5 cut(s) 35, 79, 271, 367, 375
BseSI GKGCMC 1 cut(s) 165
BshFI GGCC 1 cut(s) 355
BshNI GGYRCC 1 cut(s) 259
BsiSI CCGG 1 cut(s) 206
BslI CCNNNNNNNGG 5 cut(s) 66, 117, 309, 362, 363
BsmAI GTCTC 1 cut(s) 406
BsnI GGCC 1 cut(s) 355
Bsp1286I GDGCHC 1 cut(s) 165
Bsp1720I GCTNAGC 1 cut(s) 322
BspANI GGCC 1 cut(s) 355
BspCNI CTCAG 3 cut(s) 317, 335, 385
BspLI GGNNCC 2 cut(s) 261, 314
BspT107I GGYRCC 1 cut(s) 259
BsrI ACTGG 5 cut(s) 35, 79, 271, 367, 375
BssECI CCNNGG 3 cut(s) 115, 116, 316
BssT1I CCWWGG 1 cut(s) 316
Bst2UI CCWGG 1 cut(s) 117
Bst4CI ACNGT 5 cut(s) 223, 235, 241, 384, 417
BstBAI YACGTR 1 cut(s) 218
BstDEI CTNAG 4 cut(s) 157, 304, 322, 393
BstMAI GTCTC 1 cut(s) 406
BstNI CCWGG 1 cut(s) 117
BstSCI CCNGG 1 cut(s) 115
BstSLI GKGCMC 1 cut(s) 165
BstSNI TACGTA 1 cut(s) 218
BstXI CCANNNNNNTGG 1 cut(s) 341
BsuRI GGCC 1 cut(s) 355
BtsIMutI CAGTG 2 cut(s) 240, 264
Cfr13I GGNCC 1 cut(s) 354
Csp6I GTAC 3 cut(s) 219, 260, 418
CviAII CATG 1 cut(s) 47
CviJI RGCY 6 cut(s) 34, 92, 287, 321, 341, 355
CviKI_1 RGCY 6 cut(s) 34, 92, 287, 321, 341, 355
CviQI GTAC 3 cut(s) 219, 260, 418
DdeI CTNAG 4 cut(s) 157, 304, 322, 393
Eco105I TACGTA 1 cut(s) 218
Eco130I CCWWGG 1 cut(s) 316
EcoRII CCWGG 1 cut(s) 115
EcoT14I CCWWGG 1 cut(s) 316
ErhI CCWWGG 1 cut(s) 316
FaeI CATG 1 cut(s) 50
FaiI YATR 6 cut(s) 15, 48, 135, 141, 290, 436
FatI CATG 1 cut(s) 46
FspBI CTAG 1 cut(s) 422
HaeIII GGCC 1 cut(s) 355
HapII CCGG 1 cut(s) 206
Hin1II CATG 1 cut(s) 50
HincII GTYRAC 1 cut(s) 380
HindII GTYRAC 1 cut(s) 380
HinfI GANTC 1 cut(s) 178
HpaII CCGG 1 cut(s) 206
HphI GGTGA 1 cut(s) 223
Hpy166II GTNNAC 1 cut(s) 380
Hpy188I TCNGA 2 cut(s) 295, 394
Hpy188III TCNNGA 1 cut(s) 67
Hpy8I GTNNAC 1 cut(s) 380
HpyCH4III ACNGT 5 cut(s) 223, 235, 241, 384, 417
HpyCH4IV ACGT 1 cut(s) 217
HpyCH4V TGCA 3 cut(s) 42, 127, 347
HpyF3I CTNAG 4 cut(s) 157, 304, 322, 393
HpySE526I ACGT 1 cut(s) 217
Hsp92II CATG 1 cut(s) 50
KpnI GGTACC 1 cut(s) 263
LweI GCATC 1 cut(s) 136
MaeI CTAG 1 cut(s) 422
MaeII ACGT 1 cut(s) 217
MaeIII GTNAC 3 cut(s) 55, 235, 426
MhlI GDGCHC 1 cut(s) 165
MmeI TCCRAC 1 cut(s) 254
MnlI CCTC 2 cut(s) 158, 313
MseI TTAA 3 cut(s) 107, 225, 281
MslI CAYNNNNRTG 1 cut(s) 132
MspA1I CMGCKG 1 cut(s) 341
MspI CCGG 1 cut(s) 206
MspR9I CCNGG 1 cut(s) 117
MvaI CCWGG 1 cut(s) 117
NlaIII CATG 1 cut(s) 50
NlaIV GGNNCC 2 cut(s) 261, 314
NmuCI GTSAC 1 cut(s) 235
PasI CCCWGGG 1 cut(s) 116
PfeI GAWTC 1 cut(s) 178
Ppu21I YACGTR 1 cut(s) 218
Psp6I CCWGG 1 cut(s) 115
PspGI CCWGG 1 cut(s) 115
PspN4I GGNNCC 2 cut(s) 261, 314
PspPI GGNCC 1 cut(s) 354
PvuII CAGCTG 1 cut(s) 341
RsaI GTAC 3 cut(s) 220, 261, 419
RsaNI GTAC 3 cut(s) 219, 260, 418
RseI CAYNNNNRTG 1 cut(s) 132
SaqAI TTAA 3 cut(s) 107, 225, 281
Sau96I GGNCC 1 cut(s) 354
ScrFI CCNGG 1 cut(s) 117
SduI GDGCHC 1 cut(s) 165
SetI ASST 8 cut(s) 22, 27, 94, 220, 289, 318, 343, 423
SfaNI GCATC 1 cut(s) 136
SmiMI CAYNNNNRTG 1 cut(s) 132
SnaBI TACGTA 1 cut(s) 218
SspMI CTAG 1 cut(s) 422
StyD4I CCNGG 1 cut(s) 115
StyI CCWWGG 1 cut(s) 316
TaaI ACNGT 5 cut(s) 223, 235, 241, 384, 417
TaiI ACGT 1 cut(s) 220
TfiI GAWTC 1 cut(s) 178
Tru1I TTAA 3 cut(s) 107, 225, 281
Tru9I TTAA 3 cut(s) 107, 225, 281
TscAI CASTG 2 cut(s) 240, 271
TseFI GTSAC 1 cut(s) 235
Tsp45I GTSAC 1 cut(s) 235
TspRI CASTG 2 cut(s) 240, 271
XspI CTAG 1 cut(s) 422
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.