Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002242

Physical Location & Seq

Genomic Coordinates Reverse (-)

5341126 .. 5357394

Gene Structure 16269 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G074600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3492 bp

ATGAGTGAGGAGACCAAGTTCAGCGTCCTATGCAGCCTCTTCAACTGGATGCAAAGAAGCAAAACATCAACCCTAAAGCGCTCTAAATTCCGCAAATTTCTCGACACTTTCTGTAAACCTGCTGATTATTTCGATTCGATTCGCCTAATTCTTCCCAGCCTCGACCGCGAGCGCGGCAGCTATGGCCTTAAGGAGTCTGTGCTCGCCACCTGCCTCATTGACGCTCTCGGCATGGCCAGAGACTCCGAGGACGCTCTTCGCCTCATCAATTGGCGCAAAGGCGGCGCCAAGACTGGTGTCAATGCCGGCAACTTCTCGCTCGTGGCCGCCGAGGTGCTGCAACGTAGACAAGGAGTGAGTTCAGGTGGATTAACAATCAAGGAGTTAAATGACTTGCTCGATCGTTTAGCTTCAAGTGAAAATAGGGCAGAGAAGACTTCAGTTCTTTCTACGTTGATAAAGAAGACAAATGCACAGGAAATGAAGTGGATTGTCATGATTATTCTTAAAGATCTGAAGCTGGGAACTAGTGAAAAGAGCATTTTTCATGAATTTCATCCAGATGCTGAAGACTTGTTTAATGTCACATGTGACTTGAAATTGGTTTGTGAAAAGCTGAGGGATAGAAATCAGCGTCATAAACGCCAGGACATTGAAGTTGGAAAAGCTGTACGCCCACAACTAGCTATGAGAGTTGGTGATGCAACTATTGCATGGAAAAAGCTTCATGGTAAGGAAGTGGTTGTTGAGTGTAAATTTGATGGGGATCGCATCCAAATTCATAAGAATGGAACTGAAATACATTACTTCTCAAGGAATTTTCTTGATCACCCTGAATATGGACATGCAATGTCAGACATTGTTATACAAAATGTTCTGGCTGATAGGTGTATTCTTGATGGTGAGATGTTGGTCTGGGACACATCTTCCAATCGTTTTGCTGAGTTTGGTTCAAATCAAGAAATAGCCAAGGCAGCAAGGGATGGACTTGACAGTGATAGACAGTTGTGCTATGTTGCATTCGATATCCTCTATGTTGGAGATACTAGTGTAATTCACCAGAGCTTGAAGGAACGGCATGAGCTTCTCCAGAAAGTTGTGAAACCTTTGAAGGGTCGTTTAGAAATTTTAGTACCTAATGGTGGTCTTAACACTCACCGTTCTGAAGGGGATCCTTGTTGGTCGCTTATTGCTCGTAGTGTGGATGAAGTCGAGAGGTTTTTCAAAGAAACCATCGAAAATAGAGATGAGGGGATTGTTTTGAAGGACCTTGGTTCTAAATGGGAACCTAGTGATCGGAGTGGAAAGTGGTTAAAATTAAAGCCAGATTACATTCGTGCAGGCTCTGATTTGGATGTTCTTATCATAGGCGGATACTATGGTTCTGGACGTCGTGGAGGGGAGGTAGCTCAATTCTTGGTGGGTCTTGCTGAACGTCCAGTACCAAATACATATCCTAGAAAATTTGTATCCTTTTGCAGAGTGGGCACTGGACTTTCTGATGAGGATCTAGAAGCTGTTGCAACCAAATTAAAGCCTTATTTGAGGAAATATGAGTACCCAAGAAAGGCTCCACCAAGTTTTTATCAAGTAACAAACAATTCAAAAGAGAGACCAGATGTTTGGGTTGAAAGCCCCGAGAAATCAATAATACTTTCTATAACAAGTGACATCAGAACTATAAGGTCTGAGGTTTTTTCTGCACCATACAGCCTGAGATTTCCACGTATTGATCGAGTTAGATATGATAAACCTTGGCATGAATGTCTTGATGTGGAATCGTTTATTGAGCTTGTACATTCAAGCAATGGGACCACACAAAGGGGAACGGATTACGGTGCTCTGCAGGATACTAAAACGAAACATAAGAAATCCTCTAGAAAGGAAGAAAAAAAAAATCTTTCTGTTGTTCCCTCTCATTTAGTTCAGACTGATGTTTCCAGCGTCAAGGAGGACACATTACTATTTTCAAATATGATGTTTTACTTTGTTAATGTGCCTCCCACTAATTCTCTTGATTCCTTGCACAAACTTGTTGTTGAGAATGGGGGTACTTTCTCTATGAATTTGAATAACGCAGTTACGCACTGTGTTGCAGCTGATAGCAAAGGGATTAAATATCAGGCAGCAAAGCGTCATGGAGATATAATTCATTTCTCTTGGGTATTGGATTGTTGTTCTCAAAAGAGACTTCTTGCTTTACAGCCAAAGTACTATCTCTTCATATCTGAATCTTCAAAAATGAAGTTACAAGAAGAAATTGATGAATTTTCTGACTCGTACTACTGGGATCTTGACCTTGCAGACATCAAGCAGCTTTTAAGCAACATGTATAGATCTGAGGATTCCAAAACTATCGACCATTACAAGAAAAAATACTGTCCAATGGAGAAATGGTCTCGCTTTCACGGCTGCTGCATTTACTTTATCCCATCAACTCATTCCTTGAAACCGGATTGGGAAGTCCTTTTACGATTCACACTCAGAAGGTTGAAGATTCAAGTTCTCATAAGTGCTGGCAGAGTCACTGACAGTATTGCTCATGCGACTCATTTGGTAGTCTTGTCAGTGCAGGGTCTTGATGTCGATTCTGGAACTTTATTGCAAAGTTTCACTGAATCAGAGAAACGATTTCTGCATAACAAAAAGTTGCATATCGTTGGATCTCAATGGTTGGAAGACTGCTTGGAAAGGGACCAGAGACTGCAAGAAGAAACATATAGCTTAAAACCCAATGGGTGGGAAGAATTCAGCATTGAAGAGTGGAAACATGACATGGATCTAGAAGAAGCACCCTCTGATGTGGACACTCTGCAAATCAACAATTCTTCTGCTTCTCCTAACCAAGAAGGAAAAGAGATAGGAGGCAAAGAAGCTCCAGAAAACTATAGGATCTTGGCCTCACCTGAGAGGGAAAGCAAAAGGAAAAGAGGAAGACCTGCTCTCACAAGCATGAACAAAGGAAAAACTGGTGTCAACCAAGCTCGGAGAACACGGGTGCGCATTGGAAGGAAGCCTGCTAAAATATCAGGAAATGAGTCAGATGAAGGTGGCTCTCATGATAACACATTACGTGCGGAAGAGGTTGATAAGGAAGCAAGGAAACATGGAATGATGAGCGACGCAAGTTTAGACATCCAAGAAAATGAAGCAATTAAAGATTCTGAATCATTACAAAGAGACAATGCAGCTGTGCAAGAGGTTGCTGAAGACATTAGCTTTGAGGACCATTCTTATAAAATTCCTAATGTCGAAATGATTGAGAAGTGTAATATCGAAGACAGTGGAAAGCCGGAGAAACTTGAAGTTATGGCTGATCCTGTTCAAGCCATGTTGTTTGACATGATTCCAAGTCTGGCTATGAAGAAAGTTGAAACTACAAATACGAGTATTGAAAAGGAAAAACCAGCAGTAGATCTGAATGCAGGACCTTCAAAGAAAAAGAAAGTTAGCTACAAGGATGTTGCTGGTGAGCTGCTCAAGGATTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000726 GO:0003674 GO:0003824 GO:0003909 GO:0003910 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005911 GO:0006139 GO:0006259 GO:0006266 GO:0006281 GO:0006289 GO:0006297 GO:0006302 GO:0006303 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009314 GO:0009506 GO:0009628 GO:0009987 GO:0010165 GO:0010212 GO:0016874 GO:0016886 GO:0030054 GO:0032807 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048046 GO:0050896 GO:0051103 GO:0051716 GO:0055044 GO:0071704 GO:0090304 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03450 map03450

Pfam Domains

Protein Families

BRCT_2 DNA_ligase_A_C DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_IV

Protein Analysis

1164

Amino Acids

132.31

Weight (kDa)

6.79

Isoelectric Point (pI)

42.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002242)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57160 AT5G57160
fragaria_vesca	FvH4_4g07160
malus_domestica	MD16G1247900.v1.1
prunus_persica	Prupe.1G074600_v2.0.a1 Prupe.1G074600_v2.0.a1
pyrus_communis	pycom12g16110 pycom12g16210 pycom16g20800
rosa_chinensis	RchiOBHm_Chr0c22g0500591 RchiOBHm_Chr4g0399311 RchiOBHm_Chr5g0052491 RchiOBHm_Chr7g0206661
rosa_laevigata	RLG00000009274 RLG00000012027 RLG00000013478 RLG00000013735 RLG00000034678
rosa_multiflora	Rmu_co8101330.1_g000001 Rmu_co8329359.1_g000001 Rmu_sc0000924.1_g000031 Rmu_sc0003135.1_g000008
rosa_roxburghii	Rroxscaffold_4G00283390 Rroxscaffold_4G00329320 Rroxscaffold_5G00344240
rosa_rugosa	Rorug04G0016500
rosa_samantha	Rh2AG218900 Rh2BG192100 Rh2BG230700 Rh2CG361900 Rh2DG225100 Rh3BG254200 Rh3DG357600 Rh4AG094200 Rh4AG102100 Rh4BG091600 Rh4CG102400 Rh4CG110300 Rh4DG086300 Rh7DG237100 Rh7DG335000 Rh7DG335200
rosa_wichuraiana	Rw4G007730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	3237
AarI	CACCTGC	1 cut(s)	218
AatII	GACGTC	1 cut(s)	1393
Acc16I	TGCGCA	1 cut(s)	3002
Acc36I	ACCTGC	3 cut(s)	127, 218, 2947
AccB1I	GGYRCC	1 cut(s)	284
AccB7I	CCANNNNNTGG	1 cut(s)	2739
AccI	GTMKAC	1 cut(s)	346
AccII	CGCG	2 cut(s)	168, 174
AciI	CCGC	7 cut(s)	91, 166, 174, 282, 327, 1371, 3077
AclWI	GGATC	9 cut(s)	774, 1166, 1179, 1515, 2298, 2671, 2787, 2900, 3311
AcoI	YGGCCR	2 cut(s)	234, 324
AcuI	CTGAAG	5 cut(s)	423, 536, 588, 1185, 3228
AcyI	GRCGYC	2 cut(s)	285, 1390
AfaI	GTAC	8 cut(s)	672, 1134, 1443, 1559, 1797, 2053, 2213, 2282
AfeI	AGCGCT	1 cut(s)	80
AfiI	CCNNNNNNNGG	6 cut(s)	839, 1112, 1142, 1567, 1821, 2739
AflII	CTTAAG	1 cut(s)	188
AflIII	ACRYGT	2 cut(s)	587, 2328
AhlI	ACTAGT	2 cut(s)	527, 1046
AjnI	CCWGG	1 cut(s)	645
AloI	GAACNNNNNNTCC	1 cut(s)	34
Alw21I	GWGCWC	2 cut(s)	204, 1843
Alw26I	GTCTC	7 cut(s)	5, 234, 1606, 2182, 2403, 2695, 3174
AlwI	GGATC	9 cut(s)	774, 1166, 1179, 1515, 2298, 2671, 2787, 2900, 3311
AlwNI	CAGNNNCTG	3 cut(s)	566, 1346, 2704
Ama87I	CYCGRG	1 cut(s)	1637
Aor51HI	AGCGCT	1 cut(s)	80
AoxI	GGCC	4 cut(s)	184, 234, 324, 2898
ArsI	GACNNNNNNTTYG	4 cut(s)	1605, 1637, 3203, 3235
AspLEI	GCGC	5 cut(s)	81, 174, 276, 287, 3003
AspS9I	GGNCC	5 cut(s)	1267, 1812, 2695, 3226, 3428
AsuHPI	GGTGA	7 cut(s)	710, 821, 914, 1049, 1148, 2895, 3482
AvaI	CYCGRG	1 cut(s)	1637
AvaII	GGWCC	5 cut(s)	1267, 1812, 2695, 3226, 3428
BaeGI	GKGCMC	1 cut(s)	1490
BaeI	ACNNNNGTAYC	4 cut(s)	1035, 1068, 1366, 1399
BalI	TGGCCA	1 cut(s)	236
BamHI	GGATCC	1 cut(s)	1171
BanI	GGYRCC	1 cut(s)	284
BarI	GAAGNNNNNNTAC	4 cut(s)	2204, 2236, 2454, 2486
BauI	CACGAG	1 cut(s)	320
BbsI	GAAGAC	7 cut(s)	440, 470, 576, 2685, 2941, 3216, 3285
Bbv12I	GWGCWC	2 cut(s)	204, 1843
BbvCI	CCTCAGC	1 cut(s)	617
BccI	CCATC	5 cut(s)	755, 893, 977, 1241, 2440
BceAI	ACGGC	2 cut(s)	1091, 2425
BcgI	CGANNNNNNTGC	2 cut(s)	82, 116
BciT130I	CCWGG	1 cut(s)	647
BciVI	GTATCC	3 cut(s)	1367, 1480, 1843
BclI	TGATCA	1 cut(s)	826
BcoDI	GTCTC	7 cut(s)	5, 234, 1606, 2182, 2403, 2695, 3174
BcuI	ACTAGT	2 cut(s)	527, 1046
BfaI	CTAG	8 cut(s)	528, 683, 1047, 1290, 1458, 1511, 1878, 2783
BfmI	CTRYAG	2 cut(s)	1844, 2887
BfoI	RGCGCY	2 cut(s)	82, 288
BfrI	CTTAAG	1 cut(s)	188
BfuAI	ACCTGC	3 cut(s)	127, 218, 2947
BfuI	GTATCC	3 cut(s)	1367, 1480, 1843
BglII	AGATCT	3 cut(s)	511, 2336, 3415
BmcAI	AGTACT	1 cut(s)	2213
Bme1390I	CCNGG	1 cut(s)	647
Bme18I	GGWCC	5 cut(s)	1267, 1812, 2695, 3226, 3428
BmeT110I	CYCGRG	1 cut(s)	1637
BmgT120I	GGNCC	5 cut(s)	1267, 1812, 2695, 3226, 3428
BmiI	GGNNCC	6 cut(s)	286, 1173, 1287, 1572, 1813, 2696
BmrFI	CCNGG	1 cut(s)	647
BmrI	ACTGGG	1 cut(s)	2296
BmsI	GCATC	4 cut(s)	39, 553, 691, 780
BmuI	ACTGGG	1 cut(s)	2296
BoxI	GACNNNNGTC	1 cut(s)	296
BpiI	GAAGAC	7 cut(s)	440, 470, 576, 2685, 2941, 3216, 3285
BpmI	CTGGAG	2 cut(s)	1073, 2862
Bpu10I	CCTNAGC	1 cut(s)	617
BpuEI	CTTGAG	2 cut(s)	796, 3464
BsaAI	YACGTR	2 cut(s)	1727, 3074
BsaBI	GATNNNNATC	3 cut(s)	627, 765, 1506
BsaHI	GRCGYC	2 cut(s)	285, 1390
BsaI	GGTCTC	3 cut(s)	5, 1606, 2403
BsaJI	CCNNGG	5 cut(s)	246, 330, 969, 1270, 1754
BsaWI	WCCGGW	1 cut(s)	2452
BsaXI	ACNNNNNCTCC	5 cut(s)	32, 1389, 1419, 2381, 2411
Bsc4I	CCNNNNNNNGG	6 cut(s)	839, 1112, 1142, 1567, 1821, 2739
Bse118I	RCCGGY	1 cut(s)	305
Bse1I	ACTGG	6 cut(s)	50, 298, 1439, 1495, 2291, 2974
Bse3DI	GCAATG	2 cut(s)	855, 1813
Bse8I	GATNNNNATC	3 cut(s)	627, 765, 1506
BseBI	CCWGG	1 cut(s)	647
BseDI	CCNNGG	5 cut(s)	246, 330, 969, 1270, 1754
BseGI	GGATG	8 cut(s)	54, 556, 771, 988, 1210, 1360, 3135, 3466
BseJI	GATNNNNATC	3 cut(s)	627, 765, 1506
BseLI	CCNNNNNNNGG	6 cut(s)	839, 1112, 1142, 1567, 1821, 2739
BseMI	GCAATG	2 cut(s)	855, 1813
BseMII	CTCAG	7 cut(s)	608, 933, 1680, 1706, 2331, 2497, 2898
BseNI	ACTGG	6 cut(s)	50, 298, 1439, 1495, 2291, 2974
BseRI	GAGGAG	1 cut(s)	23
BseSI	GKGCMC	1 cut(s)	1490
BseYI	CCCAGC	2 cut(s)	155, 520
BsgI	GTGCAG	3 cut(s)	1359, 1686, 2591
Bsh1236I	CGCG	2 cut(s)	168, 174
Bsh1285I	CGRYCG	2 cut(s)	166, 403
BshFI	GGCC	4 cut(s)	186, 236, 326, 2900
BshNI	GGYRCC	1 cut(s)	284
BsiEI	CGRYCG	2 cut(s)	166, 403
BsiHKAI	GWGCWC	2 cut(s)	204, 1843
BsiHKCI	CYCGRG	1 cut(s)	1637
BsiSI	CCGG	3 cut(s)	306, 2453, 3293
BslFI	GGGAC	3 cut(s)	932, 1825, 2708
BslI	CCNNNNNNNGG	6 cut(s)	839, 1112, 1142, 1567, 1821, 2739
BsmAI	GTCTC	7 cut(s)	5, 234, 1606, 2182, 2403, 2695, 3174
BsmFI	GGGAC	3 cut(s)	932, 1825, 2708
BsmI	GAATGC	2 cut(s)	1019, 3427
BsnI	GGCC	4 cut(s)	186, 236, 326, 2900
Bso31I	GGTCTC	3 cut(s)	5, 1606, 2403
BsoBI	CYCGRG	1 cut(s)	1637
Bsp1286I	GDGCHC	3 cut(s)	204, 1490, 1843
Bsp1407I	TGTACA	1 cut(s)	1795
BspACI	CCGC	7 cut(s)	91, 166, 174, 282, 327, 1371, 3077
BspANI	GGCC	4 cut(s)	186, 236, 326, 2900
BspCNI	CTCAG	7 cut(s)	609, 934, 1681, 1707, 2332, 2496, 2899
BspFNI	CGCG	2 cut(s)	168, 174
BspHI	TCATGA	3 cut(s)	495, 547, 3058
BspLI	GGNNCC	6 cut(s)	286, 1173, 1287, 1572, 1813, 2696
BspMAI	CTGCAG	1 cut(s)	1848
BspMI	ACCTGC	3 cut(s)	127, 218, 2947
BspPI	GGATC	9 cut(s)	774, 1166, 1179, 1515, 2298, 2671, 2787, 2900, 3311
BspQI	GCTCTTC	1 cut(s)	261
BspT107I	GGYRCC	1 cut(s)	284
BspTI	CTTAAG	1 cut(s)	188
BspTNI	GGTCTC	3 cut(s)	5, 1606, 2403
BsrDI	GCAATG	2 cut(s)	855, 1813
BsrFI	RCCGGY	1 cut(s)	305
BsrGI	TGTACA	1 cut(s)	1795
BsrI	ACTGG	6 cut(s)	50, 298, 1439, 1495, 2291, 2974
BssAI	RCCGGY	1 cut(s)	305
BssECI	CCNNGG	5 cut(s)	246, 330, 969, 1270, 1754
BssNI	GRCGYC	2 cut(s)	285, 1390
BssSI	CACGAG	1 cut(s)	320
BssT1I	CCWWGG	3 cut(s)	969, 1270, 1754
Bst2BI	CACGAG	1 cut(s)	320
Bst2UI	CCWGG	1 cut(s)	647
Bst4CI	ACNGT	8 cut(s)	995, 1005, 1160, 1838, 2090, 2381, 2534, 3284
Bst6I	CTCTTC	5 cut(s)	44, 261, 2225, 2754, 3075
BstACI	GRCGYC	2 cut(s)	285, 1390
BstAFI	CTTAAG	1 cut(s)	188
BstAPI	GCANNNNNTGC	1 cut(s)	710
BstAUI	TGTACA	1 cut(s)	1795
BstBAI	YACGTR	2 cut(s)	1727, 3074
BstC8I	GCNNGC	6 cut(s)	170, 204, 307, 1342, 2518, 3018
BstDEI	CTNAG	7 cut(s)	617, 942, 1689, 1715, 2340, 2483, 2907
BstF5I	GGATG	8 cut(s)	54, 556, 771, 988, 1210, 1360, 3135, 3466
BstFNI	CGCG	2 cut(s)	168, 174
BstH2I	RGCGCY	2 cut(s)	82, 288
BstHHI	GCGC	5 cut(s)	81, 174, 276, 287, 3003
BstMAI	GTCTC	7 cut(s)	5, 234, 1606, 2182, 2403, 2695, 3174
BstMCI	CGRYCG	2 cut(s)	166, 403
BstMWI	GCNNNNNNNGC	9 cut(s)	30, 165, 174, 183, 282, 710, 974, 1485, 2409
BstNI	CCWGG	1 cut(s)	647
BstNSI	RCATGY	3 cut(s)	591, 848, 2332
BstPAI	GACNNNNGTC	1 cut(s)	296
BstSCI	CCNGG	1 cut(s)	645
BstSFI	CTRYAG	2 cut(s)	1844, 2887
BstSLI	GKGCMC	1 cut(s)	1490
BstUI	CGCG	2 cut(s)	168, 174
BstV2I	GAAGAC	7 cut(s)	440, 470, 576, 2685, 2941, 3216, 3285
BstX2I	RGATCY	9 cut(s)	511, 1171, 1507, 2290, 2336, 2663, 2779, 2892, 3415
BstXI	CCANNNNNNTGG	1 cut(s)	1623
BstYI	RGATCY	9 cut(s)	511, 1171, 1507, 2290, 2336, 2663, 2779, 2892, 3415
BsuI	GTATCC	3 cut(s)	1367, 1480, 1843
BsuRI	GGCC	4 cut(s)	186, 236, 326, 2900
BtsCI	GGATG	8 cut(s)	54, 556, 771, 988, 1210, 1360, 3135, 3466
BtsIMutI	CAGTG	7 cut(s)	1000, 1488, 2086, 2526, 2574, 2613, 3289
BveI	ACCTGC	3 cut(s)	127, 218, 2947
Cac8I	GCNNGC	6 cut(s)	170, 204, 307, 1342, 2518, 3018
CaiI	CAGNNNCTG	3 cut(s)	566, 1346, 2704
CciI	TCATGA	3 cut(s)	495, 547, 3058
CfoI	GCGC	5 cut(s)	81, 174, 276, 287, 3003
Cfr10I	RCCGGY	1 cut(s)	305
Cfr13I	GGNCC	5 cut(s)	1267, 1812, 2695, 3226, 3428
CseI	GACGC	7 cut(s)	13, 230, 260, 623, 1933, 2123, 3131
Csp6I	GTAC	8 cut(s)	671, 1133, 1442, 1558, 1796, 2052, 2212, 2281
CviQI	GTAC	8 cut(s)	671, 1133, 1442, 1558, 1796, 2052, 2212, 2281
DdeI	CTNAG	7 cut(s)	617, 942, 1689, 1715, 2340, 2483, 2907
DinI	GGCGCC	1 cut(s)	286
EaeI	YGGCCR	2 cut(s)	234, 324
Eam1104I	CTCTTC	5 cut(s)	44, 261, 2225, 2754, 3075
EarI	CTCTTC	5 cut(s)	44, 261, 2225, 2754, 3075
EciI	GGCGGA	1 cut(s)	1386
Eco130I	CCWWGG	3 cut(s)	969, 1270, 1754
Eco31I	GGTCTC	3 cut(s)	5, 1606, 2403
Eco32I	GATATC	1 cut(s)	1027
Eco47I	GGWCC	5 cut(s)	1267, 1812, 2695, 3226, 3428
Eco47III	AGCGCT	1 cut(s)	80
Eco57I	CTGAAG	5 cut(s)	423, 536, 588, 1185, 3228
Eco88I	CYCGRG	1 cut(s)	1637
EcoO109I	RGGNCCY	2 cut(s)	1267, 3428
EcoRI	GAATTC	1 cut(s)	2747
EcoRII	CCWGG	1 cut(s)	645
EcoRV	GATATC	1 cut(s)	1027
EcoT14I	CCWWGG	3 cut(s)	969, 1270, 1754
EgeI	GGCGCC	1 cut(s)	286
EheI	GGCGCC	1 cut(s)	286
ErhI	CCWWGG	3 cut(s)	969, 1270, 1754
FaqI	GGGAC	3 cut(s)	932, 1825, 2708
FbaI	TGATCA	1 cut(s)	826
FblI	GTMKAC	1 cut(s)	346
FokI	GGATG	8 cut(s)	61, 543, 758, 995, 1217, 1367, 3122, 3473
FspAI	RTGCGCAY	1 cut(s)	3002
FspBI	CTAG	8 cut(s)	528, 683, 1047, 1290, 1458, 1511, 1878, 2783
FspI	TGCGCA	1 cut(s)	3002
GlaI	GCGC	5 cut(s)	80, 173, 275, 286, 3002
GsaI	CCCAGC	2 cut(s)	159, 524
GsuI	CTGGAG	2 cut(s)	1073, 2862
HaeII	RGCGCY	2 cut(s)	82, 288
HaeIII	GGCC	4 cut(s)	186, 236, 326, 2900
HapII	CCGG	3 cut(s)	306, 2453, 3293
HgaI	GACGC	7 cut(s)	13, 230, 260, 623, 1933, 2123, 3131
HhaI	GCGC	5 cut(s)	81, 174, 276, 287, 3003
Hin1I	GRCGYC	2 cut(s)	285, 1390
Hin6I	GCGC	5 cut(s)	79, 172, 274, 285, 3001
HinP1I	GCGC	5 cut(s)	79, 172, 274, 285, 3001
HincII	GTYRAC	1 cut(s)	2977
HindII	GTYRAC	1 cut(s)	2977
HindIII	AAGCTT	1 cut(s)	722
HpaII	CCGG	3 cut(s)	306, 2453, 3293
HphI	GGTGA	7 cut(s)	710, 821, 914, 1049, 1148, 2895, 3482
Hpy166II	GTNNAC	4 cut(s)	116, 347, 2806, 2977
Hpy8I	GTNNAC	4 cut(s)	116, 347, 2806, 2977
Hpy99I	CGWCG	2 cut(s)	1395, 3125
HpyAV	CCTTC	9 cut(s)	1063, 1105, 1160, 1258, 2481, 2843, 3003, 3041, 3441
HpyCH4III	ACNGT	8 cut(s)	995, 1005, 1160, 1838, 2090, 2381, 2534, 3284
HpyCH4IV	ACGT	6 cut(s)	343, 452, 1390, 1435, 1726, 3073
HpyF10VI	GCNNNNNNNGC	9 cut(s)	30, 165, 174, 183, 282, 710, 974, 1485, 2409
HpyF3I	CTNAG	7 cut(s)	617, 942, 1689, 1715, 2340, 2483, 2907
HpySE526I	ACGT	6 cut(s)	343, 452, 1390, 1435, 1726, 3073
Hsp92I	GRCGYC	2 cut(s)	285, 1390
HspAI	GCGC	5 cut(s)	79, 172, 274, 285, 3001
KasI	GGCGCC	1 cut(s)	284
KroI	GCCGGC	1 cut(s)	305
KroNI	GCCGGC	1 cut(s)	307
Ksp22I	TGATCA	1 cut(s)	826
LguI	GCTCTTC	1 cut(s)	261
LmnI	GCTCC	2 cut(s)	1576, 2881
LweI	GCATC	4 cut(s)	39, 553, 691, 780
MaeI	CTAG	8 cut(s)	528, 683, 1047, 1290, 1458, 1511, 1878, 2783
MaeII	ACGT	6 cut(s)	343, 452, 1390, 1435, 1726, 3073
MaeIII	GTNAC	7 cut(s)	583, 590, 1591, 1667, 2080, 2247, 2524
MfeI	CAATTG	1 cut(s)	268
MflI	RGATCY	9 cut(s)	511, 1171, 1507, 2290, 2336, 2663, 2779, 2892, 3415
MhlI	GDGCHC	3 cut(s)	204, 1490, 1843
MlsI	TGGCCA	1 cut(s)	236
MluNI	TGGCCA	1 cut(s)	236
Mly113I	GGCGCC	1 cut(s)	285
MlyI	GAGTC	6 cut(s)	203, 236, 2270, 2532, 2542, 3047
MmeI	TCCRAC	4 cut(s)	640, 1018, 2641, 2655
Mox20I	TGGCCA	1 cut(s)	236
MroNI	GCCGGC	1 cut(s)	305
MscI	TGGCCA	1 cut(s)	236
MslI	CAYNNNNRTG	3 cut(s)	561, 786, 2951
Msp20I	TGGCCA	1 cut(s)	236
MspA1I	CMGCKG	2 cut(s)	2099, 3191
MspCI	CTTAAG	1 cut(s)	188
MspI	CCGG	3 cut(s)	306, 2453, 3293
MspR9I	CCNGG	1 cut(s)	647
MunI	CAATTG	1 cut(s)	268
Mva1269I	GAATGC	2 cut(s)	1019, 3427
MvaI	CCWGG	1 cut(s)	647
MvnI	CGCG	2 cut(s)	168, 174
MwoI	GCNNNNNNNGC	9 cut(s)	30, 165, 174, 183, 282, 710, 974, 1485, 2409
NaeI	GCCGGC	1 cut(s)	307
NarI	GGCGCC	1 cut(s)	285
NgoMIV	GCCGGC	1 cut(s)	305
NlaIV	GGNNCC	6 cut(s)	286, 1173, 1287, 1572, 1813, 2696
NmeAIII	GCCGAG	2 cut(s)	207, 355
NmuCI	GTSAC	4 cut(s)	583, 590, 1667, 2524
NsbI	TGCGCA	1 cut(s)	3002
NspI	RCATGY	3 cut(s)	591, 848, 2332
PagI	TCATGA	3 cut(s)	495, 547, 3058
PaqCI	CACCTGC	1 cut(s)	218
PciI	ACATGT	2 cut(s)	587, 2328
PciSI	GCTCTTC	1 cut(s)	261
PcsI	WCGNNNNNNNCGW	2 cut(s)	327, 1732
PctI	GAATGC	2 cut(s)	1019, 3427
PdiI	GCCGGC	1 cut(s)	307
PflMI	CCANNNNNTGG	1 cut(s)	2739
Ple19I	CGATCG	1 cut(s)	403
PleI	GAGTC	6 cut(s)	202, 236, 2270, 2531, 2542, 3046
PluTI	GGCGCC	1 cut(s)	288
PpsI	GAGTC	6 cut(s)	202, 236, 2270, 2531, 2542, 3046
Ppu21I	YACGTR	2 cut(s)	1727, 3074
PpuMI	RGGWCCY	2 cut(s)	1267, 3428
PscI	ACATGT	2 cut(s)	587, 2328
PshAI	GACNNNNGTC	1 cut(s)	296
PsiI	TTATAA	1 cut(s)	3237
Psp5II	RGGWCCY	2 cut(s)	1267, 3428
Psp6I	CCWGG	1 cut(s)	645
PspFI	CCCAGC	2 cut(s)	155, 520
PspGI	CCWGG	1 cut(s)	645
PspN4I	GGNNCC	6 cut(s)	286, 1173, 1287, 1572, 1813, 2696
PspPI	GGNCC	5 cut(s)	1267, 1812, 2695, 3226, 3428
PspPPI	RGGWCCY	2 cut(s)	1267, 3428
PsrI	GAACNNNNNNTAC	2 cut(s)	1425, 1457
PstI	CTGCAG	1 cut(s)	1848
PstNI	CAGNNNCTG	3 cut(s)	566, 1346, 2704
PsuI	RGATCY	9 cut(s)	511, 1171, 1507, 2290, 2336, 2663, 2779, 2892, 3415
PvuI	CGATCG	1 cut(s)	403
PvuII	CAGCTG	2 cut(s)	2099, 3191
RsaI	GTAC	8 cut(s)	672, 1134, 1443, 1559, 1797, 2053, 2213, 2282
RsaNI	GTAC	8 cut(s)	671, 1133, 1442, 1558, 1796, 2052, 2212, 2281
RseI	CAYNNNNRTG	3 cut(s)	561, 786, 2951
SapI	GCTCTTC	1 cut(s)	261
Sau96I	GGNCC	5 cut(s)	1267, 1812, 2695, 3226, 3428
ScaI	AGTACT	1 cut(s)	2213
SchI	GAGTC	6 cut(s)	203, 236, 2270, 2532, 2542, 3047
ScrFI	CCNGG	1 cut(s)	647
SduI	GDGCHC	3 cut(s)	204, 1490, 1843
SfaNI	GCATC	4 cut(s)	39, 553, 691, 780
SfcI	CTRYAG	2 cut(s)	1844, 2887
SfoI	GGCGCC	1 cut(s)	286
SinI	GGWCC	5 cut(s)	1267, 1812, 2695, 3226, 3428
SmiMI	CAYNNNNRTG	3 cut(s)	561, 786, 2951
SmlI	CTYRAG	3 cut(s)	188, 811, 3479
SmoI	CTYRAG	3 cut(s)	188, 811, 3479
SpeI	ACTAGT	2 cut(s)	527, 1046
SsiI	CCGC	7 cut(s)	91, 166, 174, 282, 327, 1371, 3077
SspDI	GGCGCC	1 cut(s)	284
SspMI	CTAG	8 cut(s)	528, 683, 1047, 1290, 1458, 1511, 1878, 2783
StyD4I	CCNGG	1 cut(s)	645
StyI	CCWWGG	3 cut(s)	969, 1270, 1754
TaaI	ACNGT	8 cut(s)	995, 1005, 1160, 1838, 2090, 2381, 2534, 3284
TaiI	ACGT	6 cut(s)	346, 455, 1393, 1438, 1729, 3076
TatI	WGTACW	2 cut(s)	1795, 2211
TauI	GCSGC	3 cut(s)	177, 285, 329
TscAI	CASTG	7 cut(s)	1000, 1495, 2093, 2533, 2574, 2620, 3289
TseFI	GTSAC	4 cut(s)	583, 590, 1667, 2524
Tsp45I	GTSAC	4 cut(s)	583, 590, 1667, 2524
TspGWI	ACGGA	1 cut(s)	1844
TspRI	CASTG	7 cut(s)	1000, 1495, 2093, 2533, 2574, 2620, 3289
Van91I	CCANNNNNTGG	1 cut(s)	2739
Vha464I	CTTAAG	1 cut(s)	188
VpaK11BI	GGWCC	5 cut(s)	1267, 1812, 2695, 3226, 3428
XbaI	TCTAGA	3 cut(s)	1510, 1877, 2782
XceI	RCATGY	3 cut(s)	591, 848, 2332
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2391
XmiI	GTMKAC	1 cut(s)	346
XspI	CTAG	8 cut(s)	528, 683, 1047, 1290, 1458, 1511, 1878, 2783
ZraI	GACGTC	1 cut(s)	1391
ZrmI	AGTACT	1 cut(s)	2213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.