Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003135.1

Orthogroup ID

OG0002242

Physical Location & Seq

Genomic Coordinates Forward (+)

26205 .. 36638

Gene Structure 10434 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003135.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2877 bp

atgaataaggaggagaccaagttcagtgtgctgtgcagcctcttcaattggatgcaacgaagcaaaacgtcagccctaaagcgctccaagttccggaaattccttgacaacttctgcaaagcaggggattacttcagcgcaatccggctgattcttccgagcctcgatcgggagcgcggcagctatggccttaaggagtcggtgctcgccacctgcctcatcgacgctctcggcatgtcccgagactccgacgacgctcttcgcctcatcaattggcgcaagggcggcgccaagaccggtgccaatgccggcaatttcgccctcgtcgccgccgaggtgctgcaacggagacagggacttagttcaggtggactaacgattaaggagttgaatgacttgcttgatcgtttggcatccggtgaaaatagggcagagaagacttcaattctttctactttggtacagaagacaaatgcacaagaaatgaagtggatcgtcatgatcattcttaaagatctgaaattgggaattagtgaaaagagcatcttccatgaatttcatccggatgctgaagacttgtttaatgttacctgtgacttgaaattggtttgtgaaaagctgagggacagaagtcaacgacataaacgacaggacattgaagttggaaaagctgtgcgcccgcagctagctatgagagttggtgatgcaactggtgcatggaaaaagtttcatggaaaggaagttgttgttgagtgtaaattcgacggcgatcgcatccaaattcataagaatggaactgaagtacattacttctcaaggaattttcttgatcactctgaatatggacatgcaatgtcagacattattatacaaaatgttcaggctgatagctgtattcttgatggtgagatgttggtctgggacacatctctgaagcgttttgctgagtttggttcaaatcaagaaatagatgttgcattcgatatcctttacgttggagatactagtgtaattcacgagagcttgaaggaaaggcatgagcttctccagaaagtagtgaagcctttgacgggtcgtttagagattttagtacccaatggtggccttaacactcaccgttcttcaggggaaccttgttggtccctaattgttcatactctggatgatgtcgagaggttttttaaagaaaccatcgagaacagagatgaggggattgttttaaaggatcttggttctaaatgggaacctagtgatcgtagtggaaaatggttgaaattgaagccggattacatacgggctggttctgatctggatgttcttataataggaggatactatggttcaggacgtcgtggaggggaagtagctcagttcttggtgggtcttgctgaacgtccagttgcaaatacatatccgagaaggtttgtatccttttgcagagtgggtactggcctttctgacgaggagttagatgctgtggcaaccaaattaaagccttatttaaggaagtatgactaccccaaaaaggcaccaccaagtttttatgatgtaacgaaccattcaaaagagagaccagatgtttgggttgaaagccctgagaaatcaataatcctttccataacaagtgacatccgaaccataaggtccgaggtttttgctgcaccatacagcctgagatttccacgtattgatcgaattagatatgataaaccttggcatgaatgccttgatgtgcaatcatttatagagcttgtagattcaggcaatggtaccacacaaaaggggacagattatagtggcctgcaggatgataaaaagaaacacaagagatcctctaaaaaggaagagaaaagaaatctatctcttgttccctctcatttagttcagactgatgtttctggtgtcaaggaggacagcttaatattttcaaaaatgatgttctactttgctaatgtgcctccaactcattctcttgattccttgcacaaaattgttgctgagaatgggggagtgtgttatgataacagtacatctgatggattttatggtgattatcttaatttttcattctgtcttgttctttctagcaaacctgacatggttttagaagaagctccctgtgacaatgtggaaatccagaaggttccttctctttctaacaaagggaaaaacagagacaatgcagctcaagaaaactatgggatcttgggcgcacctgagaggggtggcaaaaggaaaagaggaagaccagctggcacaaacatgaacagagggaaaacaggtgccacgcaagctcgaagaacacgtgcacgtattggcaggaagcctgctaaaatatctgggaatgagtcagatgaaagtggttctcatgatcgtacgtcatttaaggaagaggttaatatcgcggaagggaatcatgggatggtaggtgacggaagttcagacatgcaaagaaatgaggcaataaaagattctacatcattacaaagtggtaaggcagctgaacaagaggttgctggagatattagattcgatggccattctgataaaattcctgaaattgaaatgattgagaagcataatggccaagacagagctaagccagagaaactcgaatttatggctgatccagttcaagccatgttgtttgatctgattccaagtcttggaaaaaagaatgctcaaactatgaatgtgagtcctgaggatgagaagccacccgtagatctgaatccaagtcctggaatgaagaatgttcaaaccacgcatactagtactgaggatgagaagccaccgtttgatatgggtgcagagcctccaaagaaaaagaaagttagctataaggatcttgctagtcagctacttaaggattggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000726 GO:0003674 GO:0003824 GO:0003909 GO:0003910 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005911 GO:0006139 GO:0006259 GO:0006266 GO:0006281 GO:0006289 GO:0006297 GO:0006302 GO:0006303 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009314 GO:0009506 GO:0009628 GO:0009987 GO:0010165 GO:0010212 GO:0016874 GO:0016886 GO:0030054 GO:0032807 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048046 GO:0050896 GO:0051103 GO:0051716 GO:0055044 GO:0071704 GO:0090304 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03450 map03450

Pfam Domains

Protein Families

BRCT_2 DNA_ligase_A_C DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_IV

Protein Analysis

958

Amino Acids

107.46

Weight (kDa)

7.57

Isoelectric Point (pI)

42.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002242)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57160 AT5G57160
fragaria_vesca	FvH4_4g07160
malus_domestica	MD16G1247900.v1.1
prunus_persica	Prupe.1G074600_v2.0.a1 Prupe.1G074600_v2.0.a1
pyrus_communis	pycom12g16110 pycom12g16210 pycom16g20800
rosa_chinensis	RchiOBHm_Chr0c22g0500591 RchiOBHm_Chr4g0399311 RchiOBHm_Chr5g0052491 RchiOBHm_Chr7g0206661
rosa_laevigata	RLG00000009274 RLG00000012027 RLG00000013478 RLG00000013735 RLG00000034678
rosa_multiflora	Rmu_co8101330.1_g000001 Rmu_co8329359.1_g000001 Rmu_sc0000924.1_g000031 Rmu_sc0003135.1_g000008
rosa_roxburghii	Rroxscaffold_4G00283390 Rroxscaffold_4G00329320 Rroxscaffold_5G00344240
rosa_rugosa	Rorug04G0016500
rosa_samantha	Rh2AG218900 Rh2BG192100 Rh2BG230700 Rh2CG361900 Rh2DG225100 Rh3BG254200 Rh3DG357600 Rh4AG094200 Rh4AG102100 Rh4BG091600 Rh4CG102400 Rh4CG110300 Rh4DG086300 Rh7DG237100 Rh7DG335000 Rh7DG335200
rosa_wichuraiana	Rw4G007730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1322
AarI	CACCTGC	1 cut(s)	221
AatII	GACGTC	1 cut(s)	1351
Acc36I	ACCTGC	1 cut(s)	221
Acc65I	GGTACC	1 cut(s)	1769
AccB1I	GGYRCC	5 cut(s)	287, 299, 1528, 1769, 2282
AccB7I	CCANNNNNTGG	2 cut(s)	2666, 2741
AccII	CGCG	2 cut(s)	177, 2405
AccIII	TCCGGA	2 cut(s)	93, 562
AciI	CCGC	5 cut(s)	177, 285, 330, 680, 2405
AclWI	GGATC	6 cut(s)	500, 1233, 1824, 2210, 2621, 2853
AcoI	YGGCCR	2 cut(s)	2536, 2584
AcsI	RAATTY	7 cut(s)	98, 554, 758, 780, 820, 2550, 2615
AcuI	CTGAAG	5 cut(s)	118, 591, 819, 953, 1107
AcvI	CACGTG	1 cut(s)	2306
AcyI	GRCGYC	2 cut(s)	288, 1348
AfaI	GTAC	8 cut(s)	462, 804, 1092, 1447, 1771, 2029, 2377, 2776
AfeI	AGCGCT	1 cut(s)	83
AfiI	CCNNNNNNNGG	8 cut(s)	93, 169, 1070, 1100, 1525, 2222, 2666, 2741
AflII	CTTAAG	2 cut(s)	191, 2864
AflIII	ACRYGT	1 cut(s)	2303
AgeI	ACCGGT	1 cut(s)	296
AhlI	ACTAGT	2 cut(s)	1004, 2771
AjnI	CCWGG	1 cut(s)	2740
AloI	GAACNNNNNNTCC	1 cut(s)	37
Alw21I	GWGCWC	2 cut(s)	207, 2311
Alw26I	GTCTC	5 cut(s)	8, 237, 343, 1564, 2169
Alw44I	GTGCAC	1 cut(s)	2307
AlwI	GGATC	6 cut(s)	500, 1233, 1824, 2210, 2621, 2853
Ama87I	CYCGRG	1 cut(s)	240
Aor13HI	TCCGGA	2 cut(s)	93, 562
Aor51HI	AGCGCT	1 cut(s)	83
AoxI	GGCC	6 cut(s)	187, 1102, 1450, 1798, 2536, 2584
ApaLI	GTGCAC	1 cut(s)	2307
ApeKI	GCWGC	7 cut(s)	36, 180, 340, 682, 1658, 2183, 2498
ApoI	RAATTY	7 cut(s)	98, 554, 758, 780, 820, 2550, 2615
ArsI	GACNNNNNNTTYG	2 cut(s)	1563, 1595
AsiGI	ACCGGT	1 cut(s)	296
AsiSI	GCGATCGC	1 cut(s)	772
Asp718I	GGTACC	1 cut(s)	1769
AspLEI	GCGC	7 cut(s)	84, 140, 177, 279, 290, 678, 2213
AspS9I	GGNCC	2 cut(s)	1140, 1644
AsuHPI	GGTGA	6 cut(s)	431, 713, 917, 1106, 2060, 2441
AsuNHI	GCTAGC	1 cut(s)	685
AvaI	CYCGRG	1 cut(s)	240
AvaII	GGWCC	2 cut(s)	1140, 1644
AxyI	CCTNAGG	1 cut(s)	2703
BaeGI	GKGCMC	1 cut(s)	2311
BaeI	ACNNNNGTAYC	4 cut(s)	993, 1026, 1324, 1357
BalI	TGGCCA	2 cut(s)	2538, 2586
BanI	GGYRCC	5 cut(s)	287, 299, 1528, 1769, 2282
BarI	GAAGNNNNNNTAC	4 cut(s)	1271, 1303, 1499, 1531
BauI	CACGAG	1 cut(s)	1016
BbrPI	CACGTG	1 cut(s)	2306
BbsI	GAAGAC	4 cut(s)	443, 473, 579, 2251
Bbv12I	GWGCWC	2 cut(s)	207, 2311
BbvCI	CCTCAGC	1 cut(s)	620
BbvI	GCAGC	7 cut(s)	48, 192, 327, 694, 1645, 2195, 2510
BccI	CCATC	5 cut(s)	896, 1199, 2030, 2416, 2528
BceAI	ACGGC	1 cut(s)	781
BcgI	CGANNNNNNTGC	2 cut(s)	1637, 1671
BciT130I	CCWGG	1 cut(s)	2742
BciVI	GTATCC	2 cut(s)	1325, 1438
BclI	TGATCA	2 cut(s)	501, 829
BcoDI	GTCTC	5 cut(s)	8, 237, 343, 1564, 2169
BcuI	ACTAGT	2 cut(s)	1004, 2771
BfaI	CTAG	6 cut(s)	686, 1005, 1248, 2085, 2772, 2853
BfmI	CTRYAG	1 cut(s)	1802
BfoI	RGCGCY	2 cut(s)	85, 291
BfrI	CTTAAG	2 cut(s)	191, 2864
BfuAI	ACCTGC	1 cut(s)	221
BfuI	GTATCC	2 cut(s)	1325, 1438
BglII	AGATCT	2 cut(s)	514, 2725
BlpI	GCTNAGC	1 cut(s)	2598
BmcAI	AGTACT	1 cut(s)	2776
Bme1390I	CCNGG	1 cut(s)	2742
Bme18I	GGWCC	2 cut(s)	1140, 1644
BmeT110I	CYCGRG	1 cut(s)	240
BmgT120I	GGNCC	2 cut(s)	1140, 1644
BmiI	GGNNCC	9 cut(s)	289, 301, 1131, 1142, 1245, 1530, 1771, 2145, 2284
BmrFI	CCNGG	1 cut(s)	2742
BmsI	GCATC	7 cut(s)	42, 422, 552, 556, 694, 783, 1462
BmtI	GCTAGC	1 cut(s)	689
BoxI	GACNNNNGTC	1 cut(s)	630
BpiI	GAAGAC	4 cut(s)	443, 473, 579, 2251
BpmI	CTGGAG	2 cut(s)	1031, 2538
Bpu10I	CCTNAGC	1 cut(s)	620
Bpu1102I	GCTNAGC	1 cut(s)	2598
BpuEI	CTTGAG	2 cut(s)	799, 2172
BsaAI	YACGTR	3 cut(s)	1685, 2306, 2312
BsaBI	GATNNNNATC	1 cut(s)	2730
BsaHI	GRCGYC	2 cut(s)	288, 1348
BsaI	GGTCTC	2 cut(s)	8, 1564
BsaJI	CCNNGG	3 cut(s)	333, 1647, 1712
BsaWI	WCCGGW	4 cut(s)	93, 296, 416, 562
BsaXI	ACNNNNNCTCC	4 cut(s)	5, 35, 1347, 1377
Bsc4I	CCNNNNNNNGG	8 cut(s)	93, 169, 1070, 1100, 1525, 2222, 2666, 2741
Bse118I	RCCGGY	2 cut(s)	296, 308
Bse1I	ACTGG	4 cut(s)	715, 1397, 1453, 2630
Bse21I	CCTNAGG	1 cut(s)	2703
Bse3DI	GCAATG	2 cut(s)	858, 1771
Bse8I	GATNNNNATC	1 cut(s)	2730
BseAI	TCCGGA	2 cut(s)	93, 562
BseBI	CCWGG	1 cut(s)	2742
BseDI	CCNNGG	3 cut(s)	333, 1647, 1712
BseJI	GATNNNNATC	1 cut(s)	2730
BseLI	CCNNNNNNNGG	8 cut(s)	93, 169, 1070, 1100, 1525, 2222, 2666, 2741
BseMI	GCAATG	2 cut(s)	858, 1771
BseMII	CTCAG	9 cut(s)	611, 936, 1382, 1587, 1664, 1989, 2208, 2694, 2769
BseNI	ACTGG	4 cut(s)	715, 1397, 1453, 2630
BseRI	GAGGAG	2 cut(s)	26, 1478
BseSI	GKGCMC	1 cut(s)	2311
BseXI	GCAGC	7 cut(s)	48, 192, 327, 694, 1645, 2195, 2510
BsgI	GTGCAG	3 cut(s)	55, 1644, 2829
Bsh1236I	CGCG	2 cut(s)	177, 2405
Bsh1285I	CGRYCG	2 cut(s)	169, 772
BshFI	GGCC	6 cut(s)	189, 1104, 1452, 1800, 2538, 2586
BshNI	GGYRCC	5 cut(s)	287, 299, 1528, 1769, 2282
BshTI	ACCGGT	1 cut(s)	296
BsiEI	CGRYCG	2 cut(s)	169, 772
BsiHKAI	GWGCWC	2 cut(s)	207, 2311
BsiHKCI	CYCGRG	1 cut(s)	240
BsiSI	CCGG	7 cut(s)	94, 145, 297, 309, 417, 563, 1283
BsiWI	CGTACG	1 cut(s)	2375
BslFI	GGGAC	6 cut(s)	223, 369, 638, 935, 1126, 1798
BslI	CCNNNNNNNGG	8 cut(s)	93, 169, 1070, 1100, 1525, 2222, 2666, 2741
BsmAI	GTCTC	5 cut(s)	8, 237, 343, 1564, 2169
BsmFI	GGGAC	6 cut(s)	223, 369, 638, 935, 1126, 1798
BsmI	GAATGC	3 cut(s)	977, 1727, 2683
BsnI	GGCC	6 cut(s)	189, 1104, 1452, 1800, 2538, 2586
Bso31I	GGTCTC	2 cut(s)	8, 1564
BsoBI	CYCGRG	1 cut(s)	240
Bsp1286I	GDGCHC	2 cut(s)	207, 2311
Bsp13I	TCCGGA	2 cut(s)	93, 562
Bsp1720I	GCTNAGC	1 cut(s)	2598
BspACI	CCGC	5 cut(s)	177, 285, 330, 680, 2405
BspANI	GGCC	6 cut(s)	189, 1104, 1452, 1800, 2538, 2586
BspCNI	CTCAG	9 cut(s)	612, 937, 1381, 1588, 1665, 1990, 2209, 2695, 2770
BspEI	TCCGGA	2 cut(s)	93, 562
BspFNI	CGCG	2 cut(s)	177, 2405
BspHI	TCATGA	2 cut(s)	498, 2368
BspLI	GGNNCC	9 cut(s)	289, 301, 1131, 1142, 1245, 1530, 1771, 2145, 2284
BspMAI	CTGCAG	1 cut(s)	1806
BspMI	ACCTGC	1 cut(s)	221
BspOI	GCTAGC	1 cut(s)	689
BspPI	GGATC	6 cut(s)	500, 1233, 1824, 2210, 2621, 2853
BspQI	GCTCTTC	1 cut(s)	264
BspT107I	GGYRCC	5 cut(s)	287, 299, 1528, 1769, 2282
BspTI	CTTAAG	2 cut(s)	191, 2864
BspTNI	GGTCTC	2 cut(s)	8, 1564
BsrDI	GCAATG	2 cut(s)	858, 1771
BsrFI	RCCGGY	2 cut(s)	296, 308
BsrI	ACTGG	4 cut(s)	715, 1397, 1453, 2630
BssAI	RCCGGY	2 cut(s)	296, 308
BssECI	CCNNGG	3 cut(s)	333, 1647, 1712
BssNI	GRCGYC	2 cut(s)	288, 1348
BssSI	CACGAG	1 cut(s)	1016
BssT1I	CCWWGG	1 cut(s)	1712
Bst2BI	CACGAG	1 cut(s)	1016
Bst2UI	CCWGG	1 cut(s)	2742
Bst4CI	ACNGT	3 cut(s)	1118, 2027, 2796
Bst6I	CTCTTC	4 cut(s)	47, 264, 1839, 2385
BstACI	GRCGYC	2 cut(s)	288, 1348
BstAFI	CTTAAG	2 cut(s)	191, 2864
BstAPI	GCANNNNNTGC	1 cut(s)	713
BstBAI	YACGTR	3 cut(s)	1685, 2306, 2312
BstC8I	GCNNGC	8 cut(s)	207, 310, 680, 687, 1802, 2254, 2292, 2328
BstFNI	CGCG	2 cut(s)	177, 2405
BstH2I	RGCGCY	2 cut(s)	85, 291
BstHHI	GCGC	7 cut(s)	84, 140, 177, 279, 290, 678, 2213
BstMAI	GTCTC	5 cut(s)	8, 237, 343, 1564, 2169
BstMCI	CGRYCG	2 cut(s)	169, 772
BstMWI	GCNNNNNNNGC	6 cut(s)	186, 285, 326, 682, 713, 2291
BstNI	CCWGG	1 cut(s)	2742
BstNSI	RCATGY	3 cut(s)	238, 851, 2449
BstPAI	GACNNNNGTC	1 cut(s)	630
BstSCI	CCNGG	1 cut(s)	2740
BstSFI	CTRYAG	1 cut(s)	1802
BstSLI	GKGCMC	1 cut(s)	2311
BstUI	CGCG	2 cut(s)	177, 2405
BstV1I	GCAGC	7 cut(s)	48, 192, 327, 694, 1645, 2195, 2510
BstV2I	GAAGAC	4 cut(s)	443, 473, 579, 2251
BstX2I	RGATCY	6 cut(s)	514, 1225, 1829, 2202, 2725, 2845
BstXI	CCANNNNNNTGG	1 cut(s)	1581
BstYI	RGATCY	6 cut(s)	514, 1225, 1829, 2202, 2725, 2845
Bsu36I	CCTNAGG	1 cut(s)	2703
BsuI	GTATCC	2 cut(s)	1325, 1438
BsuRI	GGCC	6 cut(s)	189, 1104, 1452, 1800, 2538, 2586
BtsIMutI	CAGTG	1 cut(s)	31
BveI	ACCTGC	1 cut(s)	221
Cac8I	GCNNGC	8 cut(s)	207, 310, 680, 687, 1802, 2254, 2292, 2328
CciI	TCATGA	2 cut(s)	498, 2368
CfoI	GCGC	7 cut(s)	84, 140, 177, 279, 290, 678, 2213
Cfr10I	RCCGGY	2 cut(s)	296, 308
Cfr13I	GGNCC	2 cut(s)	1140, 1644
CseI	GACGC	2 cut(s)	233, 263
Csp6I	GTAC	8 cut(s)	461, 803, 1091, 1446, 1770, 2028, 2376, 2775
CspAI	ACCGGT	1 cut(s)	296
CviQI	GTAC	8 cut(s)	461, 803, 1091, 1446, 1770, 2028, 2376, 2775
DinI	GGCGCC	1 cut(s)	289
DraI	TTTAAA	2 cut(s)	1183, 1221
EaeI	YGGCCR	2 cut(s)	2536, 2584
Eam1104I	CTCTTC	4 cut(s)	47, 264, 1839, 2385
EarI	CTCTTC	4 cut(s)	47, 264, 1839, 2385
Eco130I	CCWWGG	1 cut(s)	1712
Eco31I	GGTCTC	2 cut(s)	8, 1564
Eco32I	GATATC	1 cut(s)	985
Eco47I	GGWCC	2 cut(s)	1140, 1644
Eco47III	AGCGCT	1 cut(s)	83
Eco57I	CTGAAG	5 cut(s)	118, 591, 819, 953, 1107
Eco72I	CACGTG	1 cut(s)	2306
Eco81I	CCTNAGG	1 cut(s)	2703
Eco88I	CYCGRG	1 cut(s)	240
EcoRII	CCWGG	1 cut(s)	2740
EcoRV	GATATC	1 cut(s)	985
EcoT14I	CCWWGG	1 cut(s)	1712
EgeI	GGCGCC	1 cut(s)	289
EheI	GGCGCC	1 cut(s)	289
ErhI	CCWWGG	1 cut(s)	1712
FalI	AAGNNNNNCTT	2 cut(s)	530, 562
FaqI	GGGAC	6 cut(s)	223, 369, 638, 935, 1126, 1798
FauI	CCCGC	1 cut(s)	687
FbaI	TGATCA	2 cut(s)	501, 829
FspBI	CTAG	6 cut(s)	686, 1005, 1248, 2085, 2772, 2853
GlaI	GCGC	7 cut(s)	83, 139, 176, 278, 289, 677, 2212
GsuI	CTGGAG	2 cut(s)	1031, 2538
HaeII	RGCGCY	2 cut(s)	85, 291
HaeIII	GGCC	6 cut(s)	189, 1104, 1452, 1800, 2538, 2586
HapII	CCGG	7 cut(s)	94, 145, 297, 309, 417, 563, 1283
HgaI	GACGC	2 cut(s)	233, 263
HhaI	GCGC	7 cut(s)	84, 140, 177, 279, 290, 678, 2213
Hin1I	GRCGYC	2 cut(s)	288, 1348
Hin6I	GCGC	7 cut(s)	82, 138, 175, 277, 288, 676, 2211
HinP1I	GCGC	7 cut(s)	82, 138, 175, 277, 288, 676, 2211
HincII	GTYRAC	1 cut(s)	635
HindII	GTYRAC	1 cut(s)	635
HpaII	CCGG	7 cut(s)	94, 145, 297, 309, 417, 563, 1283
HphI	GGTGA	6 cut(s)	431, 713, 917, 1106, 2060, 2441
Hpy166II	GTNNAC	3 cut(s)	371, 635, 2309
Hpy8I	GTNNAC	3 cut(s)	371, 635, 2309
Hpy99I	CGWCG	6 cut(s)	227, 254, 257, 329, 767, 1353
HpyAV	CCTTC	5 cut(s)	1021, 1413, 2134, 2157, 2402
HpyCH4III	ACNGT	3 cut(s)	1118, 2027, 2796
HpyCH4IV	ACGT	8 cut(s)	68, 993, 1348, 1393, 1684, 2305, 2311, 2378
HpyF10VI	GCNNNNNNNGC	6 cut(s)	186, 285, 326, 682, 713, 2291
HpySE526I	ACGT	8 cut(s)	68, 993, 1348, 1393, 1684, 2305, 2311, 2378
Hsp92I	GRCGYC	2 cut(s)	288, 1348
HspAI	GCGC	7 cut(s)	82, 138, 175, 277, 288, 676, 2211
KasI	GGCGCC	1 cut(s)	287
Kpn2I	TCCGGA	2 cut(s)	93, 562
KpnI	GGTACC	1 cut(s)	1773
KroI	GCCGGC	1 cut(s)	308
KroNI	GCCGGC	1 cut(s)	310
Ksp22I	TGATCA	2 cut(s)	501, 829
LguI	GCTCTTC	1 cut(s)	264
LmnI	GCTCC	3 cut(s)	89, 172, 2119
Lsp1109I	GCAGC	7 cut(s)	48, 192, 327, 694, 1645, 2195, 2510
LweI	GCATC	7 cut(s)	42, 422, 552, 556, 694, 783, 1462
MaeI	CTAG	6 cut(s)	686, 1005, 1248, 2085, 2772, 2853
MaeII	ACGT	8 cut(s)	68, 993, 1348, 1393, 1684, 2305, 2311, 2378
MaeIII	GTNAC	6 cut(s)	586, 593, 1549, 1625, 2120, 2429
MfeI	CAATTG	2 cut(s)	46, 271
MflI	RGATCY	6 cut(s)	514, 1225, 1829, 2202, 2725, 2845
MhlI	GDGCHC	2 cut(s)	207, 2311
MlsI	TGGCCA	2 cut(s)	2538, 2586
MluNI	TGGCCA	2 cut(s)	2538, 2586
Mly113I	GGCGCC	1 cut(s)	288
MlyI	GAGTC	4 cut(s)	206, 239, 2357, 2707
MmeI	TCCRAC	4 cut(s)	273, 643, 976, 1985
Mox20I	TGGCCA	2 cut(s)	2538, 2586
MroI	TCCGGA	2 cut(s)	93, 562
MroNI	GCCGGC	1 cut(s)	308
MscI	TGGCCA	2 cut(s)	2538, 2586
MslI	CAYNNNNRTG	3 cut(s)	564, 789, 2261
Msp20I	TGGCCA	2 cut(s)	2538, 2586
MspA1I	CMGCKG	2 cut(s)	2252, 2501
MspCI	CTTAAG	2 cut(s)	191, 2864
MspI	CCGG	7 cut(s)	94, 145, 297, 309, 417, 563, 1283
MspR9I	CCNGG	1 cut(s)	2742
MunI	CAATTG	2 cut(s)	46, 271
Mva1269I	GAATGC	3 cut(s)	977, 1727, 2683
MvaI	CCWGG	1 cut(s)	2742
MvnI	CGCG	2 cut(s)	177, 2405
MwoI	GCNNNNNNNGC	6 cut(s)	186, 285, 326, 682, 713, 2291
NaeI	GCCGGC	1 cut(s)	310
NarI	GGCGCC	1 cut(s)	288
NgoMIV	GCCGGC	1 cut(s)	308
NheI	GCTAGC	1 cut(s)	685
NlaIV	GGNNCC	9 cut(s)	289, 301, 1131, 1142, 1245, 1530, 1771, 2145, 2284
NmeAIII	GCCGAG	2 cut(s)	210, 358
NmuCI	GTSAC	4 cut(s)	593, 1625, 2120, 2429
NspI	RCATGY	3 cut(s)	238, 851, 2449
PagI	TCATGA	2 cut(s)	498, 2368
PaqCI	CACCTGC	1 cut(s)	221
PciSI	GCTCTTC	1 cut(s)	264
PcsI	WCGNNNNNNNCGW	4 cut(s)	330, 643, 1690, 2302
PctI	GAATGC	3 cut(s)	977, 1727, 2683
PdiI	GCCGGC	1 cut(s)	310
PfeI	GAWTC	8 cut(s)	151, 1757, 1976, 2413, 2471, 2529, 2656, 2731
Pfl23II	CGTACG	1 cut(s)	2375
PflMI	CCANNNNNTGG	2 cut(s)	2666, 2741
PfoI	TCCNGGA	1 cut(s)	2740
PinAI	ACCGGT	1 cut(s)	296
Ple19I	CGATCG	2 cut(s)	169, 772
PleI	GAGTC	4 cut(s)	205, 239, 2356, 2706
PluTI	GGCGCC	1 cut(s)	291
PmaCI	CACGTG	1 cut(s)	2306
PmlI	CACGTG	1 cut(s)	2306
PpsI	GAGTC	4 cut(s)	205, 239, 2356, 2706
Ppu21I	YACGTR	3 cut(s)	1685, 2306, 2312
PshAI	GACNNNNGTC	1 cut(s)	630
PsiI	TTATAA	1 cut(s)	1322
Psp6I	CCWGG	1 cut(s)	2740
PspCI	CACGTG	1 cut(s)	2306
PspGI	CCWGG	1 cut(s)	2740
PspLI	CGTACG	1 cut(s)	2375
PspN4I	GGNNCC	9 cut(s)	289, 301, 1131, 1142, 1245, 1530, 1771, 2145, 2284
PspPI	GGNCC	2 cut(s)	1140, 1644
PstI	CTGCAG	1 cut(s)	1806
PsuI	RGATCY	6 cut(s)	514, 1225, 1829, 2202, 2725, 2845
PvuI	CGATCG	2 cut(s)	169, 772
PvuII	CAGCTG	2 cut(s)	2252, 2501
RgaI	GCGATCGC	1 cut(s)	772
RsaI	GTAC	8 cut(s)	462, 804, 1092, 1447, 1771, 2029, 2377, 2776
RsaNI	GTAC	8 cut(s)	461, 803, 1091, 1446, 1770, 2028, 2376, 2775
RseI	CAYNNNNRTG	3 cut(s)	564, 789, 2261
SapI	GCTCTTC	1 cut(s)	264
Sau96I	GGNCC	2 cut(s)	1140, 1644
SbfI	CCTGCAGG	1 cut(s)	1806
ScaI	AGTACT	1 cut(s)	2776
SchI	GAGTC	4 cut(s)	206, 239, 2357, 2707
ScrFI	CCNGG	1 cut(s)	2742
SdaI	CCTGCAGG	1 cut(s)	1806
SduI	GDGCHC	2 cut(s)	207, 2311
SfaAI	GCGATCGC	1 cut(s)	772
SfaNI	GCATC	7 cut(s)	42, 422, 552, 556, 694, 783, 1462
SfcI	CTRYAG	1 cut(s)	1802
SfoI	GGCGCC	1 cut(s)	289
SgfI	GCGATCGC	1 cut(s)	772
SinI	GGWCC	2 cut(s)	1140, 1644
SmiMI	CAYNNNNRTG	3 cut(s)	564, 789, 2261
SmlI	CTYRAG	4 cut(s)	191, 814, 2187, 2864
SmoI	CTYRAG	4 cut(s)	191, 814, 2187, 2864
SpeI	ACTAGT	2 cut(s)	1004, 2771
Sse8387I	CCTGCAGG	1 cut(s)	1806
SsiI	CCGC	5 cut(s)	177, 285, 330, 680, 2405
SspDI	GGCGCC	1 cut(s)	287
SspI	AATATT	1 cut(s)	1923
SspMI	CTAG	6 cut(s)	686, 1005, 1248, 2085, 2772, 2853
StyD4I	CCNGG	1 cut(s)	2740
StyI	CCWWGG	1 cut(s)	1712
TaaI	ACNGT	3 cut(s)	1118, 2027, 2796
TaiI	ACGT	8 cut(s)	71, 996, 1351, 1396, 1687, 2308, 2314, 2381
TatI	WGTACW	3 cut(s)	802, 2027, 2774
TauI	GCSGC	3 cut(s)	180, 288, 332
TfiI	GAWTC	8 cut(s)	151, 1757, 1976, 2413, 2471, 2529, 2656, 2731
TscAI	CASTG	1 cut(s)	31
TseFI	GTSAC	4 cut(s)	593, 1625, 2120, 2429
TseI	GCWGC	7 cut(s)	36, 180, 340, 682, 1658, 2183, 2498
Tsp45I	GTSAC	4 cut(s)	593, 1625, 2120, 2429
TspGWI	ACGGA	2 cut(s)	361, 2448
TspRI	CASTG	1 cut(s)	31
Van91I	CCANNNNNTGG	2 cut(s)	2666, 2741
Vha464I	CTTAAG	2 cut(s)	191, 2864
VneI	GTGCAC	1 cut(s)	2307
VpaK11BI	GGWCC	2 cut(s)	1140, 1644
XapI	RAATTY	7 cut(s)	98, 554, 758, 780, 820, 2550, 2615
XceI	RCATGY	3 cut(s)	238, 851, 2449
XspI	CTAG	6 cut(s)	686, 1005, 1248, 2085, 2772, 2853
ZraI	GACGTC	1 cut(s)	1349
ZrmI	AGTACT	1 cut(s)	2776

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.