Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0002242

Physical Location & Seq

Genomic Coordinates Reverse (-)

18538925 .. 18539568

Gene Structure 644 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g16110.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGTTTCAGGTTTTAACTCTTGAATGGTCACCTGGAATGGGGAATTTAAGATGTGTTGATCGTATAGACCTTACCTTTACTGGCTCTTTTGCAGACATGATTTTGTTACCAAGTTCAGGACAACTGGGGGTAAATCACAAAGCTGATGTTTTTGTATTAACCAACCCTGGGCAACTGCATCTTTATGATTATGCTACCCTCTCTGCCTTAGTGCCCCAGAAAGAAAGGAATCCATCTGTATCTGCTTTGGAGTTTCCGGTGGTGATACGTACAGCTAATCCAACAGTGACCGTTGCCAAACTTATTAGGGTACCCACTGGGGAGAACTTATTAAAAGCTATATCAGAGATGTCCTCAGTTGGGAACCTTGGCTCAGCACAAACCCAATCAGCTGGTGCAAGATGGCCCTTGACTGGGGGTGTTCCCAGTCAACTGTCTATTTCTGAGAATAATGGTATTGAGAGACTGTACCTAGTGTTACCATTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000137 GO:0000139 GO:0000902 GO:0000904 GO:0002791 GO:0003674 GO:0005096 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005795 GO:0005802 GO:0005856 GO:0005886 GO:0005938 GO:0006810 GO:0006892 GO:0006893 GO:0006996 GO:0007010 GO:0007275 GO:0007399 GO:0007409 GO:0008047 GO:0008150 GO:0009653 GO:0009987 GO:0010008 GO:0012505 GO:0015629 GO:0016020 GO:0016043 GO:0016192 GO:0017016 GO:0017137 GO:0017157 GO:0019899 GO:0019900 GO:0019901 GO:0022008 GO:0022607 GO:0030029 GO:0030030 GO:0030036 GO:0030154 GO:0030182 GO:0030234 GO:0030695 GO:0030863 GO:0030864 GO:0030865 GO:0030866 GO:0031090 GO:0031175 GO:0031267 GO:0031410 GO:0031901 GO:0031982 GO:0031984 GO:0031985 GO:0032501 GO:0032502 GO:0032588 GO:0032879 GO:0032880 GO:0032989 GO:0032990 GO:0043085 GO:0043087 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043547 GO:0043933 GO:0044085 GO:0044093 GO:0044422 GO:0044424 GO:0044430 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0048193 GO:0048468 GO:0048666 GO:0048667 GO:0048699 GO:0048731 GO:0048812 GO:0048856 GO:0048858 GO:0048869 GO:0050708 GO:0050789 GO:0050790 GO:0050794 GO:0051020 GO:0051046 GO:0051049 GO:0051179 GO:0051223 GO:0051234 GO:0051336 GO:0051345 GO:0060589 GO:0060627 GO:0061564 GO:0065003 GO:0065007 GO:0065009 GO:0070201 GO:0071840 GO:0071944 GO:0090087 GO:0097708 GO:0098588 GO:0098772 GO:0098791 GO:0098805 GO:0098876 GO:0099568 GO:0120036 GO:0120039 GO:1903530

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANAPC4_WD40 Synaptobrevin

Protein Analysis

163

Amino Acids

17.42

Weight (kDa)

6.07

Isoelectric Point (pI)

39.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002242)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57160 AT5G57160
fragaria_vesca	FvH4_4g07160
malus_domestica	MD16G1247900.v1.1
prunus_persica	Prupe.1G074600_v2.0.a1 Prupe.1G074600_v2.0.a1
pyrus_communis	pycom12g16110 pycom12g16210 pycom16g20800
rosa_chinensis	RchiOBHm_Chr0c22g0500591 RchiOBHm_Chr4g0399311 RchiOBHm_Chr5g0052491 RchiOBHm_Chr7g0206661
rosa_laevigata	RLG00000009274 RLG00000012027 RLG00000013478 RLG00000013735 RLG00000034678
rosa_multiflora	Rmu_co8101330.1_g000001 Rmu_co8329359.1_g000001 Rmu_sc0000924.1_g000031 Rmu_sc0003135.1_g000008
rosa_roxburghii	Rroxscaffold_4G00283390 Rroxscaffold_4G00329320 Rroxscaffold_5G00344240
rosa_rugosa	Rorug04G0016500
rosa_samantha	Rh2AG218900 Rh2BG192100 Rh2BG230700 Rh2CG361900 Rh2DG225100 Rh3BG254200 Rh3DG357600 Rh4AG094200 Rh4AG102100 Rh4BG091600 Rh4CG102400 Rh4CG110300 Rh4DG086300 Rh7DG237100 Rh7DG335000 Rh7DG335200
rosa_wichuraiana	Rw4G007730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	310
AccB1I	GGYRCC	1 cut(s)	310
AcsI	RAATTY	1 cut(s)	43
AfaI	GTAC	3 cut(s)	271, 312, 470
AfiI	CCNNNNNNNGG	6 cut(s)	38, 116, 168, 360, 413, 414
AgsI	TTSAA	1 cut(s)	23
AjnI	CCWGG	2 cut(s)	31, 166
AluBI	AGCT	4 cut(s)	143, 275, 338, 392
AluI	AGCT	4 cut(s)	143, 275, 338, 392
Alw26I	GTCTC	1 cut(s)	457
AoxI	GGCC	1 cut(s)	404
ApoI	RAATTY	1 cut(s)	43
Asp718I	GGTACC	1 cut(s)	310
AspS9I	GGNCC	1 cut(s)	405
AsuHPI	GGTGA	2 cut(s)	21, 274
BaeGI	GKGCMC	1 cut(s)	216
BanI	GGYRCC	1 cut(s)	310
BccI	CCATC	2 cut(s)	241, 396
BciT130I	CCWGG	2 cut(s)	33, 168
BcoDI	GTCTC	1 cut(s)	457
BfaI	CTAG	1 cut(s)	473
BlpI	GCTNAGC	1 cut(s)	373
Bme1390I	CCNGG	2 cut(s)	33, 168
BmgT120I	GGNCC	1 cut(s)	405
BmiI	GGNNCC	2 cut(s)	312, 365
BmrFI	CCNGG	2 cut(s)	33, 168
BmrI	ACTGGG	4 cut(s)	134, 327, 420, 423
BmsI	GCATC	1 cut(s)	187
BmuI	ACTGGG	4 cut(s)	134, 327, 420, 423
BplI	GAGNNNNNCTC	2 cut(s)	338, 370
Bpu1102I	GCTNAGC	1 cut(s)	373
BsaAI	YACGTR	1 cut(s)	269
BsaJI	CCNNGG	3 cut(s)	166, 167, 367
BsaWI	WCCGGW	1 cut(s)	256
Bsc4I	CCNNNNNNNGG	6 cut(s)	38, 116, 168, 360, 413, 414
Bse1I	ACTGG	5 cut(s)	85, 129, 322, 418, 426
BseBI	CCWGG	2 cut(s)	33, 168
BseDI	CCNNGG	3 cut(s)	166, 167, 367
BseLI	CCNNNNNNNGG	6 cut(s)	38, 116, 168, 360, 413, 414
BseMII	CTCAG	3 cut(s)	369, 387, 435
BseNI	ACTGG	5 cut(s)	85, 129, 322, 418, 426
BseSI	GKGCMC	1 cut(s)	216
BshFI	GGCC	1 cut(s)	406
BshNI	GGYRCC	1 cut(s)	310
BsiSI	CCGG	1 cut(s)	257
BslI	CCNNNNNNNGG	6 cut(s)	38, 116, 168, 360, 413, 414
BsmAI	GTCTC	1 cut(s)	457
BsnI	GGCC	1 cut(s)	406
Bsp1286I	GDGCHC	1 cut(s)	216
Bsp143I	GATC	1 cut(s)	58
Bsp1720I	GCTNAGC	1 cut(s)	373
BspANI	GGCC	1 cut(s)	406
BspCNI	CTCAG	3 cut(s)	368, 386, 436
BspLI	GGNNCC	2 cut(s)	312, 365
BspT107I	GGYRCC	1 cut(s)	310
BsrI	ACTGG	5 cut(s)	85, 129, 322, 418, 426
BssECI	CCNNGG	3 cut(s)	166, 167, 367
BssMI	GATC	1 cut(s)	58
BssT1I	CCWWGG	1 cut(s)	367
Bst2UI	CCWGG	2 cut(s)	33, 168
Bst4CI	ACNGT	4 cut(s)	286, 292, 435, 468
BstBAI	YACGTR	1 cut(s)	269
BstDEI	CTNAG	4 cut(s)	208, 355, 373, 444
BstEII	GGTNACC	1 cut(s)	27
BstKTI	GATC	1 cut(s)	61
BstMAI	GTCTC	1 cut(s)	457
BstMBI	GATC	1 cut(s)	58
BstNI	CCWGG	2 cut(s)	33, 168
BstPI	GGTNACC	1 cut(s)	27
BstSCI	CCNGG	2 cut(s)	31, 166
BstSLI	GKGCMC	1 cut(s)	216
BstSNI	TACGTA	1 cut(s)	269
BstXI	CCANNNNNNTGG	1 cut(s)	392
BsuRI	GGCC	1 cut(s)	406
BtsIMutI	CAGTG	2 cut(s)	291, 315
Cfr13I	GGNCC	1 cut(s)	405
Csp6I	GTAC	3 cut(s)	270, 311, 469
CviAII	CATG	1 cut(s)	97
CviJI	RGCY	7 cut(s)	84, 143, 275, 338, 372, 392, 406
CviKI_1	RGCY	7 cut(s)	84, 143, 275, 338, 372, 392, 406
CviQI	GTAC	3 cut(s)	270, 311, 469
DdeI	CTNAG	4 cut(s)	208, 355, 373, 444
DpnI	GATC	1 cut(s)	60
DpnII	GATC	1 cut(s)	58
Eco105I	TACGTA	1 cut(s)	269
Eco130I	CCWWGG	1 cut(s)	367
Eco91I	GGTNACC	1 cut(s)	27
EcoO65I	GGTNACC	1 cut(s)	27
EcoRII	CCWGG	2 cut(s)	31, 166
EcoT14I	CCWWGG	1 cut(s)	367
ErhI	CCWWGG	1 cut(s)	367
FaeI	CATG	1 cut(s)	100
FaiI	YATR	6 cut(s)	65, 98, 186, 192, 341, 487
FatI	CATG	1 cut(s)	96
FspBI	CTAG	1 cut(s)	473
HaeIII	GGCC	1 cut(s)	406
HapII	CCGG	1 cut(s)	257
Hin1II	CATG	1 cut(s)	100
HincII	GTYRAC	1 cut(s)	431
HindII	GTYRAC	1 cut(s)	431
HinfI	GANTC	1 cut(s)	229
HpaII	CCGG	1 cut(s)	257
HphI	GGTGA	2 cut(s)	21, 274
Hpy166II	GTNNAC	1 cut(s)	431
Hpy188I	TCNGA	2 cut(s)	346, 445
Hpy188III	TCNNGA	2 cut(s)	20, 117
Hpy8I	GTNNAC	1 cut(s)	431
HpyCH4III	ACNGT	4 cut(s)	286, 292, 435, 468
HpyCH4IV	ACGT	1 cut(s)	268
HpyCH4V	TGCA	3 cut(s)	92, 178, 398
HpyF3I	CTNAG	4 cut(s)	208, 355, 373, 444
HpySE526I	ACGT	1 cut(s)	268
Hsp92II	CATG	1 cut(s)	100
KpnI	GGTACC	1 cut(s)	314
Kzo9I	GATC	1 cut(s)	58
LweI	GCATC	1 cut(s)	187
MaeI	CTAG	1 cut(s)	473
MaeII	ACGT	1 cut(s)	268
MaeIII	GTNAC	4 cut(s)	27, 105, 286, 477
MalI	GATC	1 cut(s)	60
MboI	GATC	1 cut(s)	58
MhlI	GDGCHC	1 cut(s)	216
MluCI	AATT	1 cut(s)	43
MmeI	TCCRAC	1 cut(s)	305
MnlI	CCTC	2 cut(s)	209, 364
MseI	TTAA	4 cut(s)	14, 47, 158, 332
MslI	CAYNNNNRTG	1 cut(s)	183
MspA1I	CMGCKG	1 cut(s)	392
MspI	CCGG	1 cut(s)	257
MspR9I	CCNGG	2 cut(s)	33, 168
MvaI	CCWGG	2 cut(s)	33, 168
NdeII	GATC	1 cut(s)	58
NlaIII	CATG	1 cut(s)	100
NlaIV	GGNNCC	2 cut(s)	312, 365
NmuCI	GTSAC	2 cut(s)	27, 286
PasI	CCCWGGG	1 cut(s)	167
PfeI	GAWTC	1 cut(s)	229
Ppu21I	YACGTR	1 cut(s)	269
Psp6I	CCWGG	2 cut(s)	31, 166
PspEI	GGTNACC	1 cut(s)	27
PspGI	CCWGG	2 cut(s)	31, 166
PspN4I	GGNNCC	2 cut(s)	312, 365
PspPI	GGNCC	1 cut(s)	405
PvuII	CAGCTG	1 cut(s)	392
RsaI	GTAC	3 cut(s)	271, 312, 470
RsaNI	GTAC	3 cut(s)	270, 311, 469
RseI	CAYNNNNRTG	1 cut(s)	183
SaqAI	TTAA	4 cut(s)	14, 47, 158, 332
Sau3AI	GATC	1 cut(s)	58
Sau96I	GGNCC	1 cut(s)	405
ScrFI	CCNGG	2 cut(s)	33, 168
SduI	GDGCHC	1 cut(s)	216
SfaNI	GCATC	1 cut(s)	187
SmiMI	CAYNNNNRTG	1 cut(s)	183
SnaBI	TACGTA	1 cut(s)	269
Sse9I	AATT	1 cut(s)	43
SspMI	CTAG	1 cut(s)	473
StyD4I	CCNGG	2 cut(s)	31, 166
StyI	CCWWGG	1 cut(s)	367
TaaI	ACNGT	4 cut(s)	286, 292, 435, 468
TaiI	ACGT	1 cut(s)	271
TasI	AATT	1 cut(s)	43
TfiI	GAWTC	1 cut(s)	229
Tru1I	TTAA	4 cut(s)	14, 47, 158, 332
Tru9I	TTAA	4 cut(s)	14, 47, 158, 332
TscAI	CASTG	2 cut(s)	291, 322
TseFI	GTSAC	2 cut(s)	27, 286
Tsp45I	GTSAC	2 cut(s)	27, 286
TspRI	CASTG	2 cut(s)	291, 322
XapI	RAATTY	1 cut(s)	43
XspI	CTAG	1 cut(s)	473

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.