Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_chinensis

Chromosome

Unknown

Orthogroup ID

OG0002242

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGTTTTGGGATATATCAACTGCTGAGTCTACCAAGGATCATAGATCTAAAAAATTAGCTAACAATGTTGCGAAGCTAGAGTTATCATCAGATGACAAGAGACTCCTTGTCATAGTTTTACACTGGTCTGCAAATAGGTTAAGTCATCATCCTAGGGGCCAACTCTTTGTTTATGGAGGTGAAGGAATTGGGTCTGAAGAAGTTCTCACGGTTCTGAGCGTGGATTGGTCTTTAGGAATAGAAATTCTGAAATGCATAGGTCGTGTGGACCTTACACTTGTTGGTTCATTTGCAGATATGGTTTTACTTCCAGCTACTGGTGCAATGGAGAATGGTGACACATTGCTTTTCACTTTGACAAATCAGGGACAACTGCATGTCTATGACAAGGCTTGCTGGTCTGCCTTAATGTCTCACCAAAAGAAAAGGATTGATGGGACTGCAGTGCAGTATCCTATGTTTATACCTACTACTAAACCGTGTATGACAGTGGTAAAGCTTGCTTTGGTGGATAGAGATGGGAAATACTCCTCAGCTCTGTCCAAGGTAGTGTTCTTTTGTGACACAATAAACTCTAGTTACATTGCATCTTGGTACTATCATCAACCATCACTTAGGTTTTCTATAATAATGAGATTGTCTCGGCTGAAAAACTTCACGAAGCATATAGAAGGAGAATTCAAGTATTCTTCCTCTTCCCTGTCTCTTCCTTTGTTGATTTTGTGTCTTTTGGTCATTAAGGAAGTTTTAGTTGACAAGTCTAATGCGAAACACACTTTGAAGAAGGGGGGTGCAAAGTGGCCTTTGACTGGTGGTGTTCCCAGCCAACTTTCTGATGCTGAAAATTTTTATGTCGAGAGACTATATGTAGCAGGATATCAAGAGATGGATCTGTTCCAATATGGGATGCCACCTATCCAACTCCGTCGCTTATATATGCTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0002791 GO:0002792 GO:0002793 GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0008047 GO:0008150 GO:0010646 GO:0010648 GO:0010817 GO:0016020 GO:0017016 GO:0017137 GO:0017157 GO:0019899 GO:0019905 GO:0023051 GO:0023057 GO:0030234 GO:0030695 GO:0031267 GO:0032879 GO:0032880 GO:0033500 GO:0042592 GO:0042593 GO:0043085 GO:0043087 GO:0043547 GO:0044093 GO:0044424 GO:0044464 GO:0046676 GO:0046883 GO:0046888 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048878 GO:0050708 GO:0050709 GO:0050714 GO:0050789 GO:0050790 GO:0050794 GO:0050796 GO:0051020 GO:0051046 GO:0051047 GO:0051048 GO:0051049 GO:0051050 GO:0051051 GO:0051222 GO:0051223 GO:0051224 GO:0051336 GO:0051345 GO:0060589 GO:0060627 GO:0065007 GO:0065008 GO:0065009 GO:0070201 GO:0071944 GO:0090087 GO:0090276 GO:0090278 GO:0098772 GO:1903530 GO:1903531 GO:1903532 GO:1904950 GO:1904951

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANAPC4_WD40 Synaptobrevin

Protein Analysis

314

Amino Acids

35.37

Weight (kDa)

8.93

Isoelectric Point (pI)

31.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002242)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57160 AT5G57160
fragaria_vesca	FvH4_4g07160
malus_domestica	MD16G1247900.v1.1
prunus_persica	Prupe.1G074600_v2.0.a1 Prupe.1G074600_v2.0.a1
pyrus_communis	pycom12g16110 pycom12g16210 pycom16g20800
rosa_chinensis	RchiOBHm_Chr0c22g0500591 RchiOBHm_Chr4g0399311 RchiOBHm_Chr5g0052491 RchiOBHm_Chr7g0206661
rosa_laevigata	RLG00000009274 RLG00000012027 RLG00000013478 RLG00000013735 RLG00000034678
rosa_multiflora	Rmu_co8101330.1_g000001 Rmu_co8329359.1_g000001 Rmu_sc0000924.1_g000031 Rmu_sc0003135.1_g000008
rosa_roxburghii	Rroxscaffold_4G00283390 Rroxscaffold_4G00329320 Rroxscaffold_5G00344240
rosa_rugosa	Rorug04G0016500
rosa_samantha	Rh2AG218900 Rh2BG192100 Rh2BG230700 Rh2CG361900 Rh2DG225100 Rh3BG254200 Rh3DG357600 Rh4AG094200 Rh4AG102100 Rh4BG091600 Rh4CG102400 Rh4CG110300 Rh4DG086300 Rh7DG237100 Rh7DG335000 Rh7DG335200
rosa_wichuraiana	Rw4G007730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	317
AccI	GTMKAC	1 cut(s)	29
AclWI	GGATC	2 cut(s)	45, 897
AcsI	RAATTY	3 cut(s)	243, 677, 844
AcuI	CTGAAG	1 cut(s)	216
AfaI	GTAC	1 cut(s)	596
AfiI	CCNNNNNNNGG	2 cut(s)	317, 809
AgsI	TTSAA	2 cut(s)	682, 781
AhdI	GACNNNNNGTC	1 cut(s)	107
AjuI	GAANNNNNNNTTGG	2 cut(s)	536, 568
AluBI	AGCT	5 cut(s)	59, 76, 314, 499, 536
AluI	AGCT	5 cut(s)	59, 76, 314, 499, 536
Alw26I	GTCTC	5 cut(s)	94, 417, 645, 708, 853
AlwI	GGATC	2 cut(s)	45, 897
AlwNI	CAGNNNCTG	1 cut(s)	317
AoxI	GGCC	2 cut(s)	157, 800
ApoI	RAATTY	3 cut(s)	243, 677, 844
Asp700I	GAANNNNTTC	2 cut(s)	201, 653
AspA2I	CCTAGG	1 cut(s)	152
AspS9I	GGNCC	2 cut(s)	157, 268
AsuHPI	GGTGA	3 cut(s)	191, 347, 407
AvaII	GGWCC	1 cut(s)	268
AvrII	CCTAGG	1 cut(s)	152
BbvCI	CCTCAGC	1 cut(s)	532
BccI	CCATC	4 cut(s)	428, 512, 616, 880
BciVI	GTATCC	1 cut(s)	462
BcoDI	GTCTC	5 cut(s)	94, 417, 645, 708, 853
BfaI	CTAG	3 cut(s)	77, 153, 576
BfmI	CTRYAG	2 cut(s)	441, 941
BfuI	GTATCC	1 cut(s)	462
BglII	AGATCT	1 cut(s)	44
BlnI	CCTAGG	1 cut(s)	152
Bme18I	GGWCC	1 cut(s)	268
BmeRI	GACNNNNNGTC	1 cut(s)	107
BmgT120I	GGNCC	2 cut(s)	157, 268
BmiI	GGNNCC	1 cut(s)	158
BmsI	GCATC	3 cut(s)	596, 826, 897
BplI	GAGNNNNNCTC	2 cut(s)	625, 657
Bpu10I	CCTNAGC	1 cut(s)	532
BsaJI	CCNNGG	3 cut(s)	33, 152, 543
Bsc4I	CCNNNNNNNGG	2 cut(s)	317, 809
Bse1I	ACTGG	3 cut(s)	128, 322, 814
Bse3DI	GCAATG	3 cut(s)	330, 341, 582
BseDI	CCNNGG	3 cut(s)	33, 152, 543
BseGI	GGATG	2 cut(s)	148, 912
BseLI	CCNNNNNNNGG	2 cut(s)	317, 809
BseMI	GCAATG	3 cut(s)	330, 341, 582
BseMII	CTCAG	3 cut(s)	15, 206, 546
BseNI	ACTGG	3 cut(s)	128, 322, 814
BseRI	GAGGAG	1 cut(s)	520
BseYI	CCCAGC	1 cut(s)	821
BsgI	GTGCAG	1 cut(s)	467
BshFI	GGCC	2 cut(s)	159, 802
BslFI	GGGAC	2 cut(s)	381, 451
BslI	CCNNNNNNNGG	2 cut(s)	317, 809
BsmAI	GTCTC	5 cut(s)	94, 417, 645, 708, 853
BsmFI	GGGAC	2 cut(s)	381, 451
BsnI	GGCC	2 cut(s)	159, 802
Bsp143I	GATC	3 cut(s)	37, 44, 889
BspANI	GGCC	2 cut(s)	159, 802
BspCNI	CTCAG	3 cut(s)	16, 207, 545
BspLI	GGNNCC	1 cut(s)	158
BspMAI	CTGCAG	1 cut(s)	445
BspPI	GGATC	2 cut(s)	45, 897
BsrDI	GCAATG	3 cut(s)	330, 341, 582
BsrI	ACTGG	3 cut(s)	128, 322, 814
BssECI	CCNNGG	3 cut(s)	33, 152, 543
BssMI	GATC	3 cut(s)	37, 44, 889
BssT1I	CCWWGG	3 cut(s)	33, 152, 543
Bst4CI	ACNGT	3 cut(s)	211, 480, 490
Bst6I	CTCTTC	2 cut(s)	700, 711
BstC8I	GCNNGC	2 cut(s)	394, 501
BstDEI	CTNAG	4 cut(s)	24, 215, 532, 614
BstF5I	GGATG	2 cut(s)	148, 912
BstKTI	GATC	3 cut(s)	40, 47, 892
BstMAI	GTCTC	5 cut(s)	94, 417, 645, 708, 853
BstMBI	GATC	3 cut(s)	37, 44, 889
BstMWI	GCNNNNNNNGC	1 cut(s)	320
BstNSI	RCATGY	1 cut(s)	380
BstSFI	CTRYAG	2 cut(s)	441, 941
BstX2I	RGATCY	2 cut(s)	44, 889
BstYI	RGATCY	2 cut(s)	44, 889
BsuI	GTATCC	1 cut(s)	462
BsuRI	GGCC	2 cut(s)	159, 802
BtsCI	GGATG	2 cut(s)	148, 912
BtsI	GCAGTG	1 cut(s)	450
BtsIMutI	CAGTG	3 cut(s)	121, 450, 495
Cac8I	GCNNGC	2 cut(s)	394, 501
CaiI	CAGNNNCTG	1 cut(s)	317
Cfr13I	GGNCC	2 cut(s)	157, 268
Csp6I	GTAC	1 cut(s)	595
CviAII	CATG	1 cut(s)	377
CviQI	GTAC	1 cut(s)	595
DdeI	CTNAG	4 cut(s)	24, 215, 532, 614
DpnI	GATC	3 cut(s)	39, 46, 891
DpnII	GATC	3 cut(s)	37, 44, 889
DriI	GACNNNNNGTC	1 cut(s)	107
Eam1104I	CTCTTC	2 cut(s)	700, 711
Eam1105I	GACNNNNNGTC	1 cut(s)	107
EarI	CTCTTC	2 cut(s)	700, 711
Eco130I	CCWWGG	3 cut(s)	33, 152, 543
Eco32I	GATATC	1 cut(s)	878
Eco47I	GGWCC	1 cut(s)	268
Eco57I	CTGAAG	1 cut(s)	216
EcoRI	GAATTC	1 cut(s)	677
EcoRV	GATATC	1 cut(s)	878
EcoT14I	CCWWGG	3 cut(s)	33, 152, 543
EcoT22I	ATGCAT	1 cut(s)	257
ErhI	CCWWGG	3 cut(s)	33, 152, 543
FaeI	CATG	1 cut(s)	380
FaqI	GGGAC	2 cut(s)	381, 451
FatI	CATG	1 cut(s)	376
FblI	GTMKAC	1 cut(s)	29
FokI	GGATG	2 cut(s)	135, 919
FspBI	CTAG	3 cut(s)	77, 153, 576
GsaI	CCCAGC	1 cut(s)	825
HaeIII	GGCC	2 cut(s)	159, 802
Hin1II	CATG	1 cut(s)	380
HincII	GTYRAC	1 cut(s)	754
HindII	GTYRAC	1 cut(s)	754
HindIII	AAGCTT	1 cut(s)	497
HinfI	GANTC	2 cut(s)	26, 102
HphI	GGTGA	3 cut(s)	191, 347, 407
Hpy166II	GTNNAC	3 cut(s)	30, 268, 754
Hpy188I	TCNGA	5 cut(s)	91, 196, 216, 249, 835
Hpy188III	TCNNGA	3 cut(s)	658, 856, 881
Hpy8I	GTNNAC	3 cut(s)	30, 268, 754
Hpy99I	CGWCG	1 cut(s)	930
HpyAV	CCTTC	3 cut(s)	176, 665, 778
HpyCH4III	ACNGT	3 cut(s)	211, 480, 490
HpyCH4V	TGCA	9 cut(s)	131, 255, 293, 323, 376, 443, 448, 587, 794
HpyF10VI	GCNNNNNNNGC	1 cut(s)	320
HpyF3I	CTNAG	4 cut(s)	24, 215, 532, 614
Hsp92II	CATG	1 cut(s)	380
Kzo9I	GATC	3 cut(s)	37, 44, 889
LpnPI	CCDG	9 cut(s)	109, 303, 324, 350, 382, 713, 795, 835, 858
LweI	GCATC	3 cut(s)	596, 826, 897
MaeI	CTAG	3 cut(s)	77, 153, 576
MaeIII	GTNAC	3 cut(s)	335, 560, 578
MalI	GATC	3 cut(s)	39, 46, 891
MboI	GATC	3 cut(s)	37, 44, 889
MboII	GAAGA	5 cut(s)	209, 681, 687, 698, 793
MflI	RGATCY	2 cut(s)	44, 889
MluCI	AATT	5 cut(s)	53, 186, 243, 677, 844
MlyI	GAGTC	2 cut(s)	35, 96
MmeI	TCCRAC	1 cut(s)	943
MnlI	CCTC	3 cut(s)	170, 541, 703
Mph1103I	ATGCAT	1 cut(s)	257
MroXI	GAANNNNTTC	2 cut(s)	201, 653
MseI	TTAA	3 cut(s)	140, 407, 738
MslI	CAYNNNNRTG	1 cut(s)	381
MwoI	GCNNNNNNNGC	1 cut(s)	320
NdeII	GATC	3 cut(s)	37, 44, 889
NlaIII	CATG	1 cut(s)	380
NlaIV	GGNNCC	1 cut(s)	158
NmeAIII	GCCGAG	1 cut(s)	622
NmuCI	GTSAC	2 cut(s)	335, 560
NsiI	ATGCAT	1 cut(s)	257
NspI	RCATGY	1 cut(s)	380
PdmI	GAANNNNTTC	2 cut(s)	201, 653
PflMI	CCANNNNNTGG	1 cut(s)	317
PleI	GAGTC	2 cut(s)	34, 96
PpsI	GAGTC	2 cut(s)	34, 96
PspFI	CCCAGC	1 cut(s)	821
PspN4I	GGNNCC	1 cut(s)	158
PspPI	GGNCC	2 cut(s)	157, 268
PstI	CTGCAG	1 cut(s)	445
PstNI	CAGNNNCTG	1 cut(s)	317
PsuI	RGATCY	2 cut(s)	44, 889
RsaI	GTAC	1 cut(s)	596
RsaNI	GTAC	1 cut(s)	595
RseI	CAYNNNNRTG	1 cut(s)	381
SaqAI	TTAA	3 cut(s)	140, 407, 738
Sau3AI	GATC	3 cut(s)	37, 44, 889
Sau96I	GGNCC	2 cut(s)	157, 268
SchI	GAGTC	2 cut(s)	35, 96
SfaNI	GCATC	3 cut(s)	596, 826, 897
SfcI	CTRYAG	2 cut(s)	441, 941
SinI	GGWCC	1 cut(s)	268
SmiMI	CAYNNNNRTG	1 cut(s)	381
Sse9I	AATT	5 cut(s)	53, 186, 243, 677, 844
SspMI	CTAG	3 cut(s)	77, 153, 576
StyI	CCWWGG	3 cut(s)	33, 152, 543
TaaI	ACNGT	3 cut(s)	211, 480, 490
TaqI	TCGA	1 cut(s)	855
TasI	AATT	5 cut(s)	53, 186, 243, 677, 844
Tru1I	TTAA	3 cut(s)	140, 407, 738
Tru9I	TTAA	3 cut(s)	140, 407, 738
TscAI	CASTG	3 cut(s)	128, 450, 495
TseFI	GTSAC	2 cut(s)	335, 560
Tsp45I	GTSAC	2 cut(s)	335, 560
TspDTI	ATGAA	1 cut(s)	276
TspGWI	ACGGA	1 cut(s)	914
TspRI	CASTG	3 cut(s)	128, 450, 495
Van91I	CCANNNNNTGG	1 cut(s)	317
VpaK11BI	GGWCC	1 cut(s)	268
XapI	RAATTY	3 cut(s)	243, 677, 844
XceI	RCATGY	1 cut(s)	380
XmaJI	CCTAGG	1 cut(s)	152
XmiI	GTMKAC	1 cut(s)	29
XmnI	GAANNNNTTC	2 cut(s)	201, 653
XspI	CTAG	3 cut(s)	77, 153, 576
Zsp2I	ATGCAT	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.