Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0002242

Physical Location & Seq

Genomic Coordinates Reverse (-)

22675249 .. 22676391

Gene Structure 1143 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG218900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGGAAATACTCCTCAGCTCTGTCCAAGGAAGTTTCAGTTGACAAGATATCAAGATGGATCTGTTCGAATATGGGATGCCACCTATCCAACTCCGTCGCTTATATATGCTATAGGTCCTGAGGTAAAAGGCATCAGATCTACAGGTGCAAATGGAACAGTCTCAGCATTGGAATTGTGTTCTCTTACTTTAAAATTAGCTATTGGTGATGTGTGTGGTCTGGTGCCGCAACGGAGACAAGGACTTAGTTCAGGTGGACTAATAATTAAGGAGTTGAATGACTTGCTTGATCGTTTGGCATCAGGTGAAAATAGGGCATTGAAGTTGGAAAAGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0002791 GO:0002792 GO:0002793 GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0008047 GO:0008150 GO:0010646 GO:0010648 GO:0010817 GO:0016020 GO:0017016 GO:0017137 GO:0017157 GO:0019899 GO:0019905 GO:0023051 GO:0023057 GO:0030234 GO:0030695 GO:0031267 GO:0032879 GO:0032880 GO:0033500 GO:0042592 GO:0042593 GO:0043085 GO:0043087 GO:0043547 GO:0044093 GO:0044424 GO:0044464 GO:0046676 GO:0046883 GO:0046888 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048878 GO:0050708 GO:0050709 GO:0050714 GO:0050789 GO:0050790 GO:0050794 GO:0050796 GO:0051020 GO:0051046 GO:0051047 GO:0051048 GO:0051049 GO:0051050 GO:0051051 GO:0051222 GO:0051223 GO:0051224 GO:0051336 GO:0051345 GO:0060589 GO:0060627 GO:0065007 GO:0065008 GO:0065009 GO:0070201 GO:0071944 GO:0090087 GO:0090276 GO:0090278 GO:0098772 GO:1903530 GO:1903531 GO:1903532 GO:1904950 GO:1904951

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANAPC4_WD40 Synaptobrevin

Protein Analysis

112

Amino Acids

12.11

Weight (kDa)

9.18

Isoelectric Point (pI)

24.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002242)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57160 AT5G57160
fragaria_vesca	FvH4_4g07160
malus_domestica	MD16G1247900.v1.1
prunus_persica	Prupe.1G074600_v2.0.a1 Prupe.1G074600_v2.0.a1
pyrus_communis	pycom12g16110 pycom12g16210 pycom16g20800
rosa_chinensis	RchiOBHm_Chr0c22g0500591 RchiOBHm_Chr4g0399311 RchiOBHm_Chr5g0052491 RchiOBHm_Chr7g0206661
rosa_laevigata	RLG00000009274 RLG00000012027 RLG00000013478 RLG00000013735 RLG00000034678
rosa_multiflora	Rmu_co8101330.1_g000001 Rmu_co8329359.1_g000001 Rmu_sc0000924.1_g000031 Rmu_sc0003135.1_g000008
rosa_roxburghii	Rroxscaffold_4G00283390 Rroxscaffold_4G00329320 Rroxscaffold_5G00344240
rosa_rugosa	Rorug04G0016500
rosa_samantha	Rh2AG218900 Rh2BG192100 Rh2BG230700 Rh2CG361900 Rh2DG225100 Rh3BG254200 Rh3DG357600 Rh4AG094200 Rh4AG102100 Rh4BG091600 Rh4CG102400 Rh4CG110300 Rh4DG086300 Rh7DG237100 Rh7DG335000 Rh7DG335200
rosa_wichuraiana	Rw4G007730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	223
AciI	CCGC	1 cut(s)	227
AclWI	GGATC	1 cut(s)	67
AgsI	TTSAA	2 cut(s)	277, 322
AluBI	AGCT	3 cut(s)	19, 200, 334
AluI	AGCT	3 cut(s)	19, 200, 334
Alw26I	GTCTC	2 cut(s)	166, 229
AlwI	GGATC	1 cut(s)	67
AspS9I	GGNCC	1 cut(s)	116
AsuHPI	GGTGA	2 cut(s)	218, 317
AsuII	TTCGAA	1 cut(s)	67
AvaII	GGWCC	1 cut(s)	116
AxyI	CCTNAGG	1 cut(s)	120
BanI	GGYRCC	1 cut(s)	223
BbvCI	CCTCAGC	1 cut(s)	15
BccI	CCATC	1 cut(s)	50
BcoDI	GTCTC	2 cut(s)	166, 229
BfmI	CTRYAG	2 cut(s)	111, 141
BglII	AGATCT	1 cut(s)	137
BisI	GCNGC	1 cut(s)	227
BlsI	GCNGC	1 cut(s)	228
Bme18I	GGWCC	1 cut(s)	116
BmgT120I	GGNCC	1 cut(s)	116
BmiI	GGNNCC	1 cut(s)	225
BmsI	GCATC	3 cut(s)	67, 141, 308
Bpu10I	CCTNAGC	1 cut(s)	15
Bpu14I	TTCGAA	1 cut(s)	67
BsaJI	CCNNGG	1 cut(s)	26
Bse21I	CCTNAGG	1 cut(s)	120
BseDI	CCNNGG	1 cut(s)	26
BseGI	GGATG	1 cut(s)	82
BseMII	CTCAG	3 cut(s)	29, 111, 177
BshNI	GGYRCC	1 cut(s)	223
BsmAI	GTCTC	2 cut(s)	166, 229
Bsp119I	TTCGAA	1 cut(s)	67
Bsp143I	GATC	3 cut(s)	59, 137, 289
BspACI	CCGC	1 cut(s)	227
BspCNI	CTCAG	3 cut(s)	28, 112, 176
BspLI	GGNNCC	1 cut(s)	225
BspPI	GGATC	1 cut(s)	67
BspT104I	TTCGAA	1 cut(s)	67
BspT107I	GGYRCC	1 cut(s)	223
BssECI	CCNNGG	1 cut(s)	26
BssMI	GATC	3 cut(s)	59, 137, 289
BssT1I	CCWWGG	1 cut(s)	26
Bst4CI	ACNGT	1 cut(s)	160
BstBI	TTCGAA	1 cut(s)	67
BstDEI	CTNAG	4 cut(s)	15, 120, 163, 245
BstF5I	GGATG	1 cut(s)	82
BstKTI	GATC	3 cut(s)	62, 140, 292
BstMAI	GTCTC	2 cut(s)	166, 229
BstMBI	GATC	3 cut(s)	59, 137, 289
BstSFI	CTRYAG	2 cut(s)	111, 141
BstX2I	RGATCY	2 cut(s)	59, 137
BstYI	RGATCY	2 cut(s)	59, 137
Bsu36I	CCTNAGG	1 cut(s)	120
BtsCI	GGATG	1 cut(s)	82
Cfr13I	GGNCC	1 cut(s)	116
CviJI	RGCY	3 cut(s)	19, 200, 334
CviKI_1	RGCY	3 cut(s)	19, 200, 334
DdeI	CTNAG	4 cut(s)	15, 120, 163, 245
DpnI	GATC	3 cut(s)	61, 139, 291
DpnII	GATC	3 cut(s)	59, 137, 289
DraI	TTTAAA	1 cut(s)	192
Eco130I	CCWWGG	1 cut(s)	26
Eco32I	GATATC	1 cut(s)	50
Eco47I	GGWCC	1 cut(s)	116
Eco81I	CCTNAGG	1 cut(s)	120
EcoO109I	RGGNCCY	1 cut(s)	116
EcoRV	GATATC	1 cut(s)	50
EcoT14I	CCWWGG	1 cut(s)	26
ErhI	CCWWGG	1 cut(s)	26
FaiI	YATR	5 cut(s)	73, 104, 106, 108, 113
Fnu4HI	GCNGC	1 cut(s)	227
FokI	GGATG	1 cut(s)	89
Fsp4HI	GCNGC	1 cut(s)	227
GluI	GCNGC	1 cut(s)	227
HincII	GTYRAC	1 cut(s)	42
HindII	GTYRAC	1 cut(s)	42
HphI	GGTGA	2 cut(s)	218, 317
Hpy166II	GTNNAC	2 cut(s)	42, 257
Hpy188I	TCNGA	1 cut(s)	137
Hpy188III	TCNNGA	2 cut(s)	53, 119
Hpy8I	GTNNAC	2 cut(s)	42, 257
Hpy99I	CGWCG	1 cut(s)	100
HpyCH4III	ACNGT	1 cut(s)	160
HpyCH4V	TGCA	1 cut(s)	149
HpyF3I	CTNAG	4 cut(s)	15, 120, 163, 245
Kzo9I	GATC	3 cut(s)	59, 137, 289
LpnPI	CCDG	5 cut(s)	129, 132, 206, 237, 288
LweI	GCATC	3 cut(s)	67, 141, 308
MalI	GATC	3 cut(s)	61, 139, 291
MboI	GATC	3 cut(s)	59, 137, 289
MflI	RGATCY	2 cut(s)	59, 137
MluCI	AATT	3 cut(s)	173, 194, 264
MmeI	TCCRAC	2 cut(s)	113, 306
MnlI	CCTC	2 cut(s)	24, 115
MseI	TTAA	2 cut(s)	191, 267
NdeII	GATC	3 cut(s)	59, 137, 289
NlaIV	GGNNCC	1 cut(s)	225
NspV	TTCGAA	1 cut(s)	67
PkrI	GCNGC	1 cut(s)	228
PpuMI	RGGWCCY	1 cut(s)	116
Psp5II	RGGWCCY	1 cut(s)	116
PspN4I	GGNNCC	1 cut(s)	225
PspPI	GGNCC	1 cut(s)	116
PspPPI	RGGWCCY	1 cut(s)	116
PsuI	RGATCY	2 cut(s)	59, 137
SaqAI	TTAA	2 cut(s)	191, 267
SatI	GCNGC	1 cut(s)	227
Sau3AI	GATC	3 cut(s)	59, 137, 289
Sau96I	GGNCC	1 cut(s)	116
SetI	ASST	9 cut(s)	21, 86, 118, 126, 148, 202, 256, 307, 336
SfaNI	GCATC	3 cut(s)	67, 141, 308
SfcI	CTRYAG	2 cut(s)	111, 141
SfuI	TTCGAA	1 cut(s)	67
SinI	GGWCC	1 cut(s)	116
Sse9I	AATT	3 cut(s)	173, 194, 264
SsiI	CCGC	1 cut(s)	227
StyI	CCWWGG	1 cut(s)	26
TaaI	ACNGT	1 cut(s)	160
TaqI	TCGA	1 cut(s)	67
TasI	AATT	3 cut(s)	173, 194, 264
TauI	GCSGC	1 cut(s)	229
Tru1I	TTAA	2 cut(s)	191, 267
Tru9I	TTAA	2 cut(s)	191, 267
TspGWI	ACGGA	2 cut(s)	84, 247
VpaK11BI	GGWCC	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.