Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0002242

Physical Location & Seq

Genomic Coordinates Forward (+)

32156066 .. 32157020

Gene Structure 955 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013478

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGCTGAGCTTCCTTTAGTCGGAAACGGTGAAGAAACCTCCCCCCTAAAGCGCTCCAAGTTTCAGAAATTCCTTGACAACTTCTGCAAAGCAAGTGATTGCTTCAGTGCAATCCGGCTGATTCTTCTGAACCTCGATCGGAAGCGCGGTAGCTATGGCCTTAAGGAGTCGGTGCTAGCAATTTCGCCCTCGCCGTCGCCAAGGTTAGTTAAGGTGCCGCAACGGAGACAGGGACTTAGTTCAGGTGGACTAATGATTAAGGAGTTGAAAGACTTGCTTGATCGTTTGGCATCAGGTAAAAATAGGTATGTTGCTTTTGTCCTAGTTCTTAATGAGCTTGGCATTAAAGTTGGAAAAGCTGTGAGCCCGCAGCTGGCTATGAGAGTTGGTGATGCAACTGGTGCATGGAACCGAAGTACATTACTTCTCAAGGTAGAGGCCTCTTATCTGAATACACAAGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000726 GO:0003674 GO:0003824 GO:0003909 GO:0003910 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005911 GO:0006139 GO:0006259 GO:0006266 GO:0006281 GO:0006289 GO:0006297 GO:0006302 GO:0006303 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009314 GO:0009506 GO:0009628 GO:0009987 GO:0010165 GO:0010212 GO:0016874 GO:0016886 GO:0030054 GO:0032807 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048046 GO:0050896 GO:0051103 GO:0051716 GO:0055044 GO:0071704 GO:0090304 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03450 map03450

Pfam Domains

Protein Families

BRCT_2 DNA_ligase_A_C DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_IV

Protein Analysis

155

Amino Acids

16.89

Weight (kDa)

10.01

Isoelectric Point (pI)

37.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002242)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57160 AT5G57160
fragaria_vesca	FvH4_4g07160
malus_domestica	MD16G1247900.v1.1
prunus_persica	Prupe.1G074600_v2.0.a1 Prupe.1G074600_v2.0.a1
pyrus_communis	pycom12g16110 pycom12g16210 pycom16g20800
rosa_chinensis	RchiOBHm_Chr0c22g0500591 RchiOBHm_Chr4g0399311 RchiOBHm_Chr5g0052491 RchiOBHm_Chr7g0206661
rosa_laevigata	RLG00000009274 RLG00000012027 RLG00000013478 RLG00000013735 RLG00000034678
rosa_multiflora	Rmu_co8101330.1_g000001 Rmu_co8329359.1_g000001 Rmu_sc0000924.1_g000031 Rmu_sc0003135.1_g000008
rosa_roxburghii	Rroxscaffold_4G00283390 Rroxscaffold_4G00329320 Rroxscaffold_5G00344240
rosa_rugosa	Rorug04G0016500
rosa_samantha	Rh2AG218900 Rh2BG192100 Rh2BG230700 Rh2CG361900 Rh2DG225100 Rh3BG254200 Rh3DG357600 Rh4AG094200 Rh4AG102100 Rh4BG091600 Rh4CG102400 Rh4CG110300 Rh4DG086300 Rh7DG237100 Rh7DG335000 Rh7DG335200
rosa_wichuraiana	Rw4G007730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	214
AccII	CGCG	1 cut(s)	147
AciI	CCGC	3 cut(s)	147, 218, 368
AcsI	RAATTY	1 cut(s)	68
AcuI	CTGAAG	1 cut(s)	88
AfaI	GTAC	1 cut(s)	418
AfeI	AGCGCT	1 cut(s)	53
AfiI	CCNNNNNNNGG	2 cut(s)	20, 373
AflII	CTTAAG	1 cut(s)	161
AgsI	TTSAA	1 cut(s)	268
AluBI	AGCT	5 cut(s)	10, 153, 337, 359, 373
AluI	AGCT	5 cut(s)	10, 153, 337, 359, 373
Alw26I	GTCTC	1 cut(s)	220
Aor51HI	AGCGCT	1 cut(s)	53
AoxI	GGCC	2 cut(s)	157, 438
ApeKI	GCWGC	1 cut(s)	370
ApoI	RAATTY	1 cut(s)	68
AspLEI	GCGC	2 cut(s)	54, 147
AsuHPI	GGTGA	2 cut(s)	41, 401
AsuNHI	GCTAGC	1 cut(s)	175
BanI	GGYRCC	1 cut(s)	214
BanII	GRGCYC	1 cut(s)	368
BbvI	GCAGC	1 cut(s)	382
BceAI	ACGGC	1 cut(s)	178
BcoDI	GTCTC	1 cut(s)	220
BfaI	CTAG	3 cut(s)	176, 323, 463
BfoI	RGCGCY	1 cut(s)	55
BfrI	CTTAAG	1 cut(s)	161
BisI	GCNGC	2 cut(s)	218, 371
BlpI	GCTNAGC	1 cut(s)	6
BlsI	GCNGC	2 cut(s)	219, 372
BmiI	GGNNCC	2 cut(s)	216, 410
BmsI	GCATC	2 cut(s)	299, 382
BmtI	GCTAGC	1 cut(s)	179
Bpu1102I	GCTNAGC	1 cut(s)	6
BpuEI	CTTGAG	1 cut(s)	413
BsaJI	CCNNGG	1 cut(s)	200
Bsc4I	CCNNNNNNNGG	2 cut(s)	20, 373
Bse1I	ACTGG	1 cut(s)	403
BseDI	CCNNGG	1 cut(s)	200
BseLI	CCNNNNNNNGG	2 cut(s)	20, 373
BseNI	ACTGG	1 cut(s)	403
BseXI	GCAGC	1 cut(s)	382
Bsh1236I	CGCG	1 cut(s)	147
Bsh1285I	CGRYCG	1 cut(s)	139
BshFI	GGCC	2 cut(s)	159, 440
BshNI	GGYRCC	1 cut(s)	214
BsiEI	CGRYCG	1 cut(s)	139
BsiSI	CCGG	1 cut(s)	115
BslFI	GGGAC	1 cut(s)	246
BslI	CCNNNNNNNGG	2 cut(s)	20, 373
BsmAI	GTCTC	1 cut(s)	220
BsmFI	GGGAC	1 cut(s)	246
BsnI	GGCC	2 cut(s)	159, 440
Bsp1286I	GDGCHC	1 cut(s)	368
Bsp143I	GATC	2 cut(s)	136, 280
Bsp1720I	GCTNAGC	1 cut(s)	6
BspACI	CCGC	3 cut(s)	147, 218, 368
BspANI	GGCC	2 cut(s)	159, 440
BspFNI	CGCG	1 cut(s)	147
BspLI	GGNNCC	2 cut(s)	216, 410
BspOI	GCTAGC	1 cut(s)	179
BspT107I	GGYRCC	1 cut(s)	214
BspTI	CTTAAG	1 cut(s)	161
BsrI	ACTGG	1 cut(s)	403
BssECI	CCNNGG	1 cut(s)	200
BssMI	GATC	2 cut(s)	136, 280
BssT1I	CCWWGG	1 cut(s)	200
Bst4CI	ACNGT	1 cut(s)	29
BstAFI	CTTAAG	1 cut(s)	161
BstAPI	GCANNNNNTGC	1 cut(s)	401
BstC8I	GCNNGC	3 cut(s)	177, 368, 375
BstDEI	CTNAG	2 cut(s)	6, 236
BstFNI	CGCG	1 cut(s)	147
BstH2I	RGCGCY	1 cut(s)	55
BstHHI	GCGC	2 cut(s)	54, 147
BstKTI	GATC	2 cut(s)	139, 283
BstMAI	GTCTC	1 cut(s)	220
BstMBI	GATC	2 cut(s)	136, 280
BstMCI	CGRYCG	1 cut(s)	139
BstMWI	GCNNNNNNNGC	1 cut(s)	401
BstUI	CGCG	1 cut(s)	147
BstV1I	GCAGC	1 cut(s)	382
BsuRI	GGCC	2 cut(s)	159, 440
BtsIMutI	CAGTG	1 cut(s)	112
Cac8I	GCNNGC	3 cut(s)	177, 368, 375
CfoI	GCGC	2 cut(s)	54, 147
Csp6I	GTAC	1 cut(s)	417
CviAII	CATG	1 cut(s)	405
CviQI	GTAC	1 cut(s)	417
DdeI	CTNAG	2 cut(s)	6, 236
DpnI	GATC	2 cut(s)	138, 282
DpnII	GATC	2 cut(s)	136, 280
Eco130I	CCWWGG	1 cut(s)	200
Eco147I	AGGCCT	1 cut(s)	440
Eco24I	GRGCYC	1 cut(s)	368
Eco47III	AGCGCT	1 cut(s)	53
Eco57I	CTGAAG	1 cut(s)	88
EcoT14I	CCWWGG	1 cut(s)	200
EcoT38I	GRGCYC	1 cut(s)	368
ErhI	CCWWGG	1 cut(s)	200
FaeI	CATG	1 cut(s)	408
FaiI	YATR	4 cut(s)	156, 309, 380, 406
FalI	AAGNNNNNCTT	2 cut(s)	261, 293
FaqI	GGGAC	1 cut(s)	246
FatI	CATG	1 cut(s)	404
FauI	CCCGC	1 cut(s)	375
Fnu4HI	GCNGC	2 cut(s)	218, 371
FriOI	GRGCYC	1 cut(s)	368
Fsp4HI	GCNGC	2 cut(s)	218, 371
FspBI	CTAG	3 cut(s)	176, 323, 463
GlaI	GCGC	2 cut(s)	53, 146
GluI	GCNGC	2 cut(s)	218, 371
HaeII	RGCGCY	1 cut(s)	55
HaeIII	GGCC	2 cut(s)	159, 440
HapII	CCGG	1 cut(s)	115
HhaI	GCGC	2 cut(s)	54, 147
Hin1II	CATG	1 cut(s)	408
Hin6I	GCGC	2 cut(s)	52, 145
HinP1I	GCGC	2 cut(s)	52, 145
HinfI	GANTC	2 cut(s)	121, 167
HpaII	CCGG	1 cut(s)	115
HphI	GGTGA	2 cut(s)	41, 401
Hpy166II	GTNNAC	1 cut(s)	248
Hpy188I	TCNGA	5 cut(s)	23, 66, 129, 141, 450
Hpy8I	GTNNAC	1 cut(s)	248
Hpy99I	CGWCG	1 cut(s)	199
HpyCH4III	ACNGT	1 cut(s)	29
HpyCH4V	TGCA	4 cut(s)	87, 110, 395, 404
HpyF10VI	GCNNNNNNNGC	1 cut(s)	401
HpyF3I	CTNAG	2 cut(s)	6, 236
Hsp92II	CATG	1 cut(s)	408
HspAI	GCGC	2 cut(s)	52, 145
Kzo9I	GATC	2 cut(s)	136, 280
LmnI	GCTCC	1 cut(s)	59
LpnPI	CCDG	6 cut(s)	128, 215, 228, 279, 359, 384
Lsp1109I	GCAGC	1 cut(s)	382
LweI	GCATC	2 cut(s)	299, 382
MaeI	CTAG	3 cut(s)	176, 323, 463
MalI	GATC	2 cut(s)	138, 282
MboI	GATC	2 cut(s)	136, 280
MboII	GAAGA	2 cut(s)	44, 116
MhlI	GDGCHC	1 cut(s)	368
MluCI	AATT	2 cut(s)	68, 180
MlyI	GAGTC	1 cut(s)	176
MmeI	TCCRAC	1 cut(s)	331
MnlI	CCTC	5 cut(s)	49, 143, 199, 430, 451
MseI	TTAA	5 cut(s)	162, 210, 258, 330, 345
MspA1I	CMGCKG	1 cut(s)	373
MspCI	CTTAAG	1 cut(s)	161
MspI	CCGG	1 cut(s)	115
MvnI	CGCG	1 cut(s)	147
MwoI	GCNNNNNNNGC	1 cut(s)	401
NdeII	GATC	2 cut(s)	136, 280
NheI	GCTAGC	1 cut(s)	175
NlaIII	CATG	1 cut(s)	408
NlaIV	GGNNCC	2 cut(s)	216, 410
PceI	AGGCCT	1 cut(s)	440
PcsI	WCGNNNNNNNCGW	1 cut(s)	191
PfeI	GAWTC	1 cut(s)	121
PkrI	GCNGC	2 cut(s)	219, 372
Ple19I	CGATCG	1 cut(s)	139
PleI	GAGTC	1 cut(s)	175
PpsI	GAGTC	1 cut(s)	175
PspN4I	GGNNCC	2 cut(s)	216, 410
PvuI	CGATCG	1 cut(s)	139
PvuII	CAGCTG	1 cut(s)	373
RsaI	GTAC	1 cut(s)	418
RsaNI	GTAC	1 cut(s)	417
SaqAI	TTAA	5 cut(s)	162, 210, 258, 330, 345
SatI	GCNGC	2 cut(s)	218, 371
Sau3AI	GATC	2 cut(s)	136, 280
SchI	GAGTC	1 cut(s)	176
SduI	GDGCHC	1 cut(s)	368
SfaNI	GCATC	2 cut(s)	299, 382
SmlI	CTYRAG	2 cut(s)	161, 428
SmoI	CTYRAG	2 cut(s)	161, 428
Sse9I	AATT	2 cut(s)	68, 180
SseBI	AGGCCT	1 cut(s)	440
SsiI	CCGC	3 cut(s)	147, 218, 368
SspMI	CTAG	3 cut(s)	176, 323, 463
StuI	AGGCCT	1 cut(s)	440
StyI	CCWWGG	1 cut(s)	200
TaaI	ACNGT	1 cut(s)	29
TaqI	TCGA	1 cut(s)	135
TasI	AATT	2 cut(s)	68, 180
TatI	WGTACW	1 cut(s)	416
TauI	GCSGC	1 cut(s)	220
TfiI	GAWTC	1 cut(s)	121
Tru1I	TTAA	5 cut(s)	162, 210, 258, 330, 345
Tru9I	TTAA	5 cut(s)	162, 210, 258, 330, 345
TscAI	CASTG	1 cut(s)	112
TseI	GCWGC	1 cut(s)	370
TspGWI	ACGGA	1 cut(s)	238
TspRI	CASTG	1 cut(s)	112
Vha464I	CTTAAG	1 cut(s)	161
XapI	RAATTY	1 cut(s)	68
XspI	CTAG	3 cut(s)	176, 323, 463

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.