Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0002242

Physical Location & Seq

Genomic Coordinates Reverse (-)

18847362 .. 18860124

Gene Structure 12763 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG102400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2952 bp

ATGAATAAGGAGGAGACCAAGTTCAGTGTGCTGTGCAGCCTCTTCAATTGGATGCAACGAAGCAAAACGTCAGCCCTAAAGCGCTCCAAGTTCCGGAAATTCCTTGACAACTTCTGCAAAGCAGGGGATTACTTCAGCGCAATCCGGCTGATTCTTCCGAACCTGGATCGGGAGCGCGGTAGCTATGGCCTTAAGGAGTCGGTGCTCGCCACCTGCCTCATCGACGCTCTCGGCATGTCCCGAGACTCCGACGACGCTCTTCGCCTCATCAATTGGCGCAAGGGCGGCGCCAAGACCGGTGCCAATGCCGGCAATTTCGCCCTCGTCGCCGCCGAGGTGCTGCAACGGAGACAGGGACTTAGTTCAGGTGGACTAACGATTAAGGAGTTGAATGACTTGCTTGATCGTTTGGCATCCGGTGAAAATAGGGCAGAGAAGACTTCAATTCTTTCTACTTTGGTACAGAAGACAAATGCTCAAGAAATGAAGTGGATCGTCATGATCATTCTTAAAGATCTCAAATTGGGAATTAGTGAAAAGAGCATCTTCCATGAATTTCATCCGGATGCTGAAGACTTGTTTAATGTTACCTGTGACTTGAAATTGGTTTGTGAAAAGCTGAGGGACAGAAGTCAACGACATAAACGACAGGACATTGAAGTTGGAAAAGCTGTGCGCCCGCAGCTAGCTATGAGAGTTGGTGATGCAACTGGTGCATGGAAAAAGTTTCATGGAAAGGAAGTTGTTGTTGAGTGTAAATTCGACGGCGATCGCATCCAAATTCATAAGAATGGAACTGAAGTAGCTCAGTTCTTGGTGGGTCTTGCTGAACGTCCTGTTGCAAATACATATCCGAGAAGGTTTGTATCCTTTTGCAGAGTGGGTACTGGACTTTCTGACGAGGAGTTAGATGCTGTGGCAACCAAATTAAAGCCTTATTTAAGGAAGTATGACTACCCCAAAAAGGCACCACCAAGTTTTTATGAAGTAACGAACCATTCAAAAGAGAGACCAGATGTTTGGGTTGAATGCCCTGAGAAATCAATAATCCTTTCCATAACAAGTGACATCCGAACCATAAGGTCCGAGGTTTTTGCTGCACCATACAGCCTGAGATTTCCACGTATTGATCGAATTAGATATGATAAACCTTGGCATGAATGCCTTGATGTGCAATCATTTATAGAGCTTGTAGATTCAGGCAATGGTACCACACAAAAGGGGACAGATTATGGTGGCCTGCAGGATGATAAAAAGAAACACAAGAGATCCTCTAAAAAGGAAGAGAAAAGAAATCTATCTCTTGTTCCCTCTCATTTAGTTCAGACTGATGTTTCTGGTGTCAAGGAGGACAGCTTAATATTTTCAAAAATGATGTTCTACTTTGCTAATGTGCCTCCAACTCATTCTCTTGATTCCTTGCACAAAATTGTTGCTGAGAATGGGGGTACTTTTTCGATGAATTTGAATAACTCAGTCACACACTGTGTTGCAGCTGATAGCAAAGGGATTAAATATCAGGCAGCAAAACGTCAGGGAGATGTGATTCATTTGTCTTGGGTCTTGGATTGTTGTTCTCAAAAGAAACTCCTTCCTTTACAGCCAAAGTACTACCTCTTCATTTCTGACTCTTCAAAGAAGAAGTTAGAAGAAGAAATAGATGAGTTTTCTGACCCGTACTTCTGGGACCTTGACCTTGCAGACATTAAGCAGCTTCTAAGCAATGTGCCTAGATCAGAGGATACCAAACGTATCAACTATTACAAGAAAAAATACTGTCCTATGGAGAAATGGTCTCGATTTCACGGCTGCTGCATTTACTTTAACTCATCAATTCATTCCTTGAAACTGGATTGGGAAGTCGTGTTAGGAGTTACAGTAAGAAGGTTAAAGATTGAAGTTCTCATGGGTGGTGGCAGAGTCAGTGACAATCTTGCTGATGCCACCCATTTGGTACTCTTGTCAATTCAGGGGTGCGATGTGGGATTCGAATCCTTATTGCAAAGTTTGACTGAAGCAGAGAAACACTTTTTGCATAGCAAAAGGTTGCATATTGTTGGACTGCAATGGTTGGAAGACAGCTTGGAAAAGAACAAAAGACTGCATGAGGAATCATATAGTTTAAAACCCTATGGGTGGGAAGAATTCAACATCGAAGAGTGCAAACCTGACATGGTTTTAGAAGAAGCTCCCTGTGACAATGTGGAAATCCAGAAGGTTCCTTCTCTTTCTAACAAAGGGAAAAACAGAGGCAATGCAGCTCAAGAAAACTATGGGATCTTGGGCGCACCTGAGAGGGGTGGCAAAAGGAAAAGAGGAAGACCAGCTGGCACAAACACGAACAGAGGGAAAACAGGTGCCACGCAAGCTCGAAGAACACGTGCACGTATTGGCAGGAAGCCTGCTAAAATATCTGGGAATGAGTCAGATGAAAGTGGTTCTCATGATCGTACGTCATTTAAGGAAGAGGTTAATATCGCGGAAGGGAATCATGGAATGGTAGGTGACGGAAGTTCAGACATGCAAAGAAATGAGGCAATAAAAGATTCTACATCATTACAAAGTGGTAAGGCAGCTGAACAAGAGGTTGCTGGAGATGTTAGATTCGATGGCCATTCTAATAAAATTCCTGAAATTGAAATGATTGAGAAGCATAATGGCCAAGACAGAGCTAAGCCAGAGAAACTCGAATTTGTGGCTGATCCAGTTCAAGCCATGTTGTTTGATCTGATTCCAAGTCTTGGAAAAATGAATGCTCAAACTATGAATGTGAGTACTGAGGATGAGAAGCCACCCGTAGATCTGAATCCAAGTCCTGGAATGAAGAATGTTCAAACCACGCATACTAGTACTGAGGATGAGAAGCCACCGTTTGATATGGGTGCAGAGCCTCCAAAGAAAAAGAAAGTTAGCTATAAGGAACTTGCTAGTCAGCTACTTAAGGATTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000726 GO:0003674 GO:0003824 GO:0003909 GO:0003910 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005911 GO:0006139 GO:0006259 GO:0006266 GO:0006281 GO:0006289 GO:0006297 GO:0006302 GO:0006303 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009314 GO:0009506 GO:0009628 GO:0009987 GO:0010165 GO:0010212 GO:0016874 GO:0016886 GO:0030054 GO:0032807 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048046 GO:0050896 GO:0051103 GO:0051716 GO:0055044 GO:0071704 GO:0090304 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03450 map03450

Pfam Domains

Protein Families

BRCT_2 DNA_ligase_A_C DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_IV

Protein Analysis

983

Amino Acids

110.94

Weight (kDa)

8.68

Isoelectric Point (pI)

45.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_ligase_A_N	PF04675	7 - 187	3.3e-38	DNA ligase N terminus
DNA_ligase_A_C	PF04679	266 - 383	4.5e-11	ATP dependent DNA ligase C terminal region
BRCT	PF00533	452 - 524	9.1e-07	BRCA1 C Terminus (BRCT) domain
BRCT_2	PF16589	454 - 535	2.6e-12	BRCT domain
PTCB-BRCT	PF12738	469 - 513	6.5e-09	twin BRCT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0002242)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57160 AT5G57160
fragaria_vesca	FvH4_4g07160
malus_domestica	MD16G1247900.v1.1
prunus_persica	Prupe.1G074600_v2.0.a1 Prupe.1G074600_v2.0.a1
pyrus_communis	pycom12g16110 pycom12g16210 pycom16g20800
rosa_chinensis	RchiOBHm_Chr0c22g0500591 RchiOBHm_Chr4g0399311 RchiOBHm_Chr5g0052491 RchiOBHm_Chr7g0206661
rosa_laevigata	RLG00000009274 RLG00000012027 RLG00000013478 RLG00000013735 RLG00000034678
rosa_multiflora	Rmu_co8101330.1_g000001 Rmu_co8329359.1_g000001 Rmu_sc0000924.1_g000031 Rmu_sc0003135.1_g000008
rosa_roxburghii	Rroxscaffold_4G00283390 Rroxscaffold_4G00329320 Rroxscaffold_5G00344240
rosa_rugosa	Rorug04G0016500
rosa_samantha	Rh2AG218900 Rh2BG192100 Rh2BG230700 Rh2CG361900 Rh2DG225100 Rh3BG254200 Rh3DG357600 Rh4AG094200 Rh4AG102100 Rh4BG091600 Rh4CG102400 Rh4CG110300 Rh4DG086300 Rh7DG237100 Rh7DG335000 Rh7DG335200
rosa_wichuraiana	Rw4G007730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	221
Acc36I	ACCTGC	1 cut(s)	221
Acc65I	GGTACC	1 cut(s)	1208
AccB1I	GGYRCC	5 cut(s)	287, 299, 967, 1208, 2357
AccB7I	CCANNNNNTGG	2 cut(s)	2741, 2816
AccII	CGCG	2 cut(s)	177, 2480
AccIII	TCCGGA	2 cut(s)	93, 562
AciI	CCGC	5 cut(s)	177, 285, 330, 680, 2480
AclWI	GGATC	5 cut(s)	174, 500, 1263, 2285, 2696
AcoI	YGGCCR	2 cut(s)	2611, 2659
AcsI	RAATTY	8 cut(s)	98, 554, 758, 780, 1462, 2144, 2625, 2690
AcuI	CTGAAG	4 cut(s)	118, 591, 819, 2034
AcvI	CACGTG	1 cut(s)	2381
AcyI	GRCGYC	1 cut(s)	288
AdeI	CACNNNGTG	1 cut(s)	1487
AfeI	AGCGCT	1 cut(s)	83
AfiI	CCNNNNNNNGG	7 cut(s)	93, 169, 964, 2136, 2297, 2741, 2816
AflII	CTTAAG	2 cut(s)	191, 2939
AflIII	ACRYGT	1 cut(s)	2378
AgeI	ACCGGT	1 cut(s)	296
AhlI	ACTAGT	1 cut(s)	2846
AjnI	CCWGG	2 cut(s)	162, 2815
AloI	GAACNNNNNNTCC	1 cut(s)	37
Alw21I	GWGCWC	2 cut(s)	207, 2386
Alw26I	GTCTC	5 cut(s)	8, 237, 343, 1003, 1800
Alw44I	GTGCAC	1 cut(s)	2382
AlwI	GGATC	5 cut(s)	174, 500, 1263, 2285, 2696
Ama87I	CYCGRG	1 cut(s)	240
Aor13HI	TCCGGA	2 cut(s)	93, 562
Aor51HI	AGCGCT	1 cut(s)	83
AoxI	GGCC	4 cut(s)	187, 1237, 2611, 2659
ApaLI	GTGCAC	1 cut(s)	2382
ApoI	RAATTY	8 cut(s)	98, 554, 758, 780, 1462, 2144, 2625, 2690
ArsI	GACNNNNNNTTYG	2 cut(s)	1002, 1034
AsiGI	ACCGGT	1 cut(s)	296
AsiSI	GCGATCGC	1 cut(s)	772
Asp718I	GGTACC	1 cut(s)	1208
AspLEI	GCGC	7 cut(s)	84, 140, 177, 279, 290, 678, 2288
AspS9I	GGNCC	2 cut(s)	1083, 1687
AsuHPI	GGTGA	3 cut(s)	431, 713, 2516
AsuII	TTCGAA	1 cut(s)	1989
AsuNHI	GCTAGC	1 cut(s)	685
AvaI	CYCGRG	1 cut(s)	240
AvaII	GGWCC	2 cut(s)	1083, 1687
BaeGI	GKGCMC	1 cut(s)	2386
BaeI	ACNNNNGTAYC	2 cut(s)	1946, 1979
BalI	TGGCCA	2 cut(s)	2613, 2661
BanI	GGYRCC	5 cut(s)	287, 299, 967, 1208, 2357
BarI	GAAGNNNNNNTAC	4 cut(s)	938, 970, 1601, 1633
BbrPI	CACGTG	1 cut(s)	2381
BbsI	GAAGAC	5 cut(s)	443, 473, 579, 2082, 2326
Bbv12I	GWGCWC	2 cut(s)	207, 2386
BbvCI	CCTCAGC	1 cut(s)	620
BccI	CCATC	1 cut(s)	2603
BceAI	ACGGC	2 cut(s)	781, 1822
BcgI	CGANNNNNNTGC	2 cut(s)	1076, 1110
BciT130I	CCWGG	2 cut(s)	164, 2817
BciVI	GTATCC	2 cut(s)	877, 1735
BclI	TGATCA	1 cut(s)	501
BcoDI	GTCTC	5 cut(s)	8, 237, 343, 1003, 1800
BcuI	ACTAGT	1 cut(s)	2846
BfaI	CTAG	4 cut(s)	686, 1731, 2847, 2928
BfmI	CTRYAG	1 cut(s)	1241
BfoI	RGCGCY	2 cut(s)	85, 291
BfrI	CTTAAG	2 cut(s)	191, 2939
BfuAI	ACCTGC	1 cut(s)	221
BfuI	GTATCC	2 cut(s)	877, 1735
BglII	AGATCT	2 cut(s)	514, 2800
BlpI	GCTNAGC	1 cut(s)	2673
BmcAI	AGTACT	3 cut(s)	1610, 2776, 2851
Bme1390I	CCNGG	2 cut(s)	164, 2817
Bme18I	GGWCC	2 cut(s)	1083, 1687
BmeT110I	CYCGRG	1 cut(s)	240
BmgT120I	GGNCC	2 cut(s)	1083, 1687
BmiI	GGNNCC	7 cut(s)	289, 301, 969, 1210, 1688, 2220, 2359
BmrFI	CCNGG	2 cut(s)	164, 2817
BmsI	GCATC	8 cut(s)	42, 422, 552, 556, 694, 783, 901, 1930
BmtI	GCTAGC	1 cut(s)	689
BoxI	GACNNNNGTC	1 cut(s)	630
BpiI	GAAGAC	5 cut(s)	443, 473, 579, 2082, 2326
BpmI	CTGGAG	1 cut(s)	2613
Bpu10I	CCTNAGC	1 cut(s)	620
Bpu1102I	GCTNAGC	1 cut(s)	2673
Bpu14I	TTCGAA	1 cut(s)	1989
BpuEI	CTTGAG	2 cut(s)	462, 2247
BsaAI	YACGTR	3 cut(s)	1124, 2381, 2387
BsaBI	GATNNNNATC	2 cut(s)	1990, 2805
BsaHI	GRCGYC	1 cut(s)	288
BsaI	GGTCTC	3 cut(s)	8, 1003, 1800
BsaJI	CCNNGG	3 cut(s)	333, 1086, 1151
BsaWI	WCCGGW	4 cut(s)	93, 296, 416, 562
BsaXI	ACNNNNNCTCC	6 cut(s)	5, 35, 1778, 1808, 1863, 1893
Bsc4I	CCNNNNNNNGG	7 cut(s)	93, 169, 964, 2136, 2297, 2741, 2816
Bse118I	RCCGGY	2 cut(s)	296, 308
Bse1I	ACTGG	4 cut(s)	715, 892, 1854, 2705
Bse3DI	GCAATG	4 cut(s)	1210, 1729, 2072, 2260
Bse8I	GATNNNNATC	2 cut(s)	1990, 2805
BseAI	TCCGGA	2 cut(s)	93, 562
BseBI	CCWGG	2 cut(s)	164, 2817
BseDI	CCNNGG	3 cut(s)	333, 1086, 1151
BseGI	GGATG	9 cut(s)	57, 413, 559, 571, 774, 1068, 1252, 2788, 2863
BseJI	GATNNNNATC	2 cut(s)	1990, 2805
BseLI	CCNNNNNNNGG	7 cut(s)	93, 169, 964, 2136, 2297, 2741, 2816
BseMI	GCAATG	4 cut(s)	1210, 1729, 2072, 2260
BseMII	CTCAG	9 cut(s)	611, 821, 1026, 1103, 1428, 1488, 2283, 2769, 2844
BseNI	ACTGG	4 cut(s)	715, 892, 1854, 2705
BseRI	GAGGAG	2 cut(s)	26, 917
BseSI	GKGCMC	1 cut(s)	2386
BsgI	GTGCAG	3 cut(s)	55, 1083, 2904
Bsh1236I	CGCG	2 cut(s)	177, 2480
Bsh1285I	CGRYCG	1 cut(s)	772
BshFI	GGCC	4 cut(s)	189, 1239, 2613, 2661
BshNI	GGYRCC	5 cut(s)	287, 299, 967, 1208, 2357
BshTI	ACCGGT	1 cut(s)	296
BsiEI	CGRYCG	1 cut(s)	772
BsiHKAI	GWGCWC	2 cut(s)	207, 2386
BsiHKCI	CYCGRG	1 cut(s)	240
BsiSI	CCGG	6 cut(s)	94, 145, 297, 309, 417, 563
BsiWI	CGTACG	1 cut(s)	2450
BslFI	GGGAC	5 cut(s)	223, 369, 638, 1237, 1700
BslI	CCNNNNNNNGG	7 cut(s)	93, 169, 964, 2136, 2297, 2741, 2816
BsmAI	GTCTC	5 cut(s)	8, 237, 343, 1003, 1800
BsmFI	GGGAC	5 cut(s)	223, 369, 638, 1237, 1700
BsmI	GAATGC	3 cut(s)	1034, 1166, 2758
BsnI	GGCC	4 cut(s)	189, 1239, 2613, 2661
Bso31I	GGTCTC	3 cut(s)	8, 1003, 1800
BsoBI	CYCGRG	1 cut(s)	240
Bsp119I	TTCGAA	1 cut(s)	1989
Bsp1286I	GDGCHC	2 cut(s)	207, 2386
Bsp13I	TCCGGA	2 cut(s)	93, 562
Bsp1720I	GCTNAGC	1 cut(s)	2673
BspACI	CCGC	5 cut(s)	177, 285, 330, 680, 2480
BspANI	GGCC	4 cut(s)	189, 1239, 2613, 2661
BspCNI	CTCAG	9 cut(s)	612, 820, 1027, 1104, 1429, 1487, 2284, 2770, 2845
BspEI	TCCGGA	2 cut(s)	93, 562
BspFNI	CGCG	2 cut(s)	177, 2480
BspHI	TCATGA	2 cut(s)	498, 2443
BspLI	GGNNCC	7 cut(s)	289, 301, 969, 1210, 1688, 2220, 2359
BspMAI	CTGCAG	1 cut(s)	1245
BspMI	ACCTGC	1 cut(s)	221
BspOI	GCTAGC	1 cut(s)	689
BspPI	GGATC	5 cut(s)	174, 500, 1263, 2285, 2696
BspQI	GCTCTTC	1 cut(s)	264
BspT104I	TTCGAA	1 cut(s)	1989
BspT107I	GGYRCC	5 cut(s)	287, 299, 967, 1208, 2357
BspTI	CTTAAG	2 cut(s)	191, 2939
BspTNI	GGTCTC	3 cut(s)	8, 1003, 1800
BsrDI	GCAATG	4 cut(s)	1210, 1729, 2072, 2260
BsrFI	RCCGGY	2 cut(s)	296, 308
BsrI	ACTGG	4 cut(s)	715, 892, 1854, 2705
BssAI	RCCGGY	2 cut(s)	296, 308
BssECI	CCNNGG	3 cut(s)	333, 1086, 1151
BssNI	GRCGYC	1 cut(s)	288
BssT1I	CCWWGG	1 cut(s)	1151
Bst2UI	CCWGG	2 cut(s)	164, 2817
Bst4CI	ACNGT	4 cut(s)	1487, 1778, 1879, 2871
Bst6I	CTCTTC	7 cut(s)	47, 264, 1278, 1622, 1636, 2151, 2460
BstACI	GRCGYC	1 cut(s)	288
BstAFI	CTTAAG	2 cut(s)	191, 2939
BstAPI	GCANNNNNTGC	1 cut(s)	713
BstBAI	YACGTR	3 cut(s)	1124, 2381, 2387
BstBI	TTCGAA	1 cut(s)	1989
BstC8I	GCNNGC	8 cut(s)	207, 310, 680, 687, 1241, 2329, 2367, 2403
BstF5I	GGATG	9 cut(s)	57, 413, 559, 571, 774, 1068, 1252, 2788, 2863
BstFNI	CGCG	2 cut(s)	177, 2480
BstH2I	RGCGCY	2 cut(s)	85, 291
BstHHI	GCGC	7 cut(s)	84, 140, 177, 279, 290, 678, 2288
BstMAI	GTCTC	5 cut(s)	8, 237, 343, 1003, 1800
BstMCI	CGRYCG	1 cut(s)	772
BstMWI	GCNNNNNNNGC	5 cut(s)	285, 326, 682, 713, 2366
BstNI	CCWGG	2 cut(s)	164, 2817
BstNSI	RCATGY	2 cut(s)	238, 2524
BstPAI	GACNNNNGTC	1 cut(s)	630
BstSCI	CCNGG	2 cut(s)	162, 2815
BstSFI	CTRYAG	1 cut(s)	1241
BstSLI	GKGCMC	1 cut(s)	2386
BstUI	CGCG	2 cut(s)	177, 2480
BstV2I	GAAGAC	5 cut(s)	443, 473, 579, 2082, 2326
BstX2I	RGATCY	4 cut(s)	514, 1268, 2277, 2800
BstXI	CCANNNNNNTGG	2 cut(s)	1020, 1951
BstYI	RGATCY	4 cut(s)	514, 1268, 2277, 2800
BsuI	GTATCC	2 cut(s)	877, 1735
BsuRI	GGCC	4 cut(s)	189, 1239, 2613, 2661
BtgZI	GCGATG	1 cut(s)	1992
BtsCI	GGATG	9 cut(s)	57, 413, 559, 571, 774, 1068, 1252, 2788, 2863
BtsIMutI	CAGTG	3 cut(s)	31, 1483, 1930
BveI	ACCTGC	1 cut(s)	221
Cac8I	GCNNGC	8 cut(s)	207, 310, 680, 687, 1241, 2329, 2367, 2403
CciI	TCATGA	2 cut(s)	498, 2443
CfoI	GCGC	7 cut(s)	84, 140, 177, 279, 290, 678, 2288
Cfr10I	RCCGGY	2 cut(s)	296, 308
Cfr13I	GGNCC	2 cut(s)	1083, 1687
CseI	GACGC	2 cut(s)	233, 263
CspAI	ACCGGT	1 cut(s)	296
DinI	GGCGCC	1 cut(s)	289
DraI	TTTAAA	1 cut(s)	2124
DraIII	CACNNNGTG	1 cut(s)	1487
EaeI	YGGCCR	2 cut(s)	2611, 2659
Eam1104I	CTCTTC	7 cut(s)	47, 264, 1278, 1622, 1636, 2151, 2460
EarI	CTCTTC	7 cut(s)	47, 264, 1278, 1622, 1636, 2151, 2460
Eco130I	CCWWGG	1 cut(s)	1151
Eco31I	GGTCTC	3 cut(s)	8, 1003, 1800
Eco47I	GGWCC	2 cut(s)	1083, 1687
Eco47III	AGCGCT	1 cut(s)	83
Eco57I	CTGAAG	4 cut(s)	118, 591, 819, 2034
Eco72I	CACGTG	1 cut(s)	2381
Eco88I	CYCGRG	1 cut(s)	240
EcoO109I	RGGNCCY	1 cut(s)	1687
EcoRI	GAATTC	1 cut(s)	2144
EcoRII	CCWGG	2 cut(s)	162, 2815
EcoT14I	CCWWGG	1 cut(s)	1151
EgeI	GGCGCC	1 cut(s)	289
EheI	GGCGCC	1 cut(s)	289
ErhI	CCWWGG	1 cut(s)	1151
FalI	AAGNNNNNCTT	2 cut(s)	530, 562
FaqI	GGGAC	5 cut(s)	223, 369, 638, 1237, 1700
FauI	CCCGC	1 cut(s)	687
FbaI	TGATCA	1 cut(s)	501
FokI	GGATG	9 cut(s)	64, 400, 546, 578, 761, 1055, 1259, 2795, 2870
FspBI	CTAG	4 cut(s)	686, 1731, 2847, 2928
GlaI	GCGC	7 cut(s)	83, 139, 176, 278, 289, 677, 2287
GsuI	CTGGAG	1 cut(s)	2613
HaeII	RGCGCY	2 cut(s)	85, 291
HaeIII	GGCC	4 cut(s)	189, 1239, 2613, 2661
HapII	CCGG	6 cut(s)	94, 145, 297, 309, 417, 563
HgaI	GACGC	2 cut(s)	233, 263
HhaI	GCGC	7 cut(s)	84, 140, 177, 279, 290, 678, 2288
Hin1I	GRCGYC	1 cut(s)	288
Hin6I	GCGC	7 cut(s)	82, 138, 175, 277, 288, 676, 2286
HinP1I	GCGC	7 cut(s)	82, 138, 175, 277, 288, 676, 2286
HincII	GTYRAC	1 cut(s)	635
HindII	GTYRAC	1 cut(s)	635
HpaII	CCGG	6 cut(s)	94, 145, 297, 309, 417, 563
HphI	GGTGA	3 cut(s)	431, 713, 2516
Hpy166II	GTNNAC	3 cut(s)	371, 635, 2384
Hpy8I	GTNNAC	3 cut(s)	371, 635, 2384
Hpy99I	CGWCG	5 cut(s)	227, 254, 257, 329, 767
HpyAV	CCTTC	6 cut(s)	852, 1601, 1878, 2209, 2232, 2477
HpyCH4III	ACNGT	4 cut(s)	1487, 1778, 1879, 2871
HpyCH4IV	ACGT	8 cut(s)	68, 832, 1123, 1531, 1750, 2380, 2386, 2453
HpyF10VI	GCNNNNNNNGC	5 cut(s)	285, 326, 682, 713, 2366
HpySE526I	ACGT	8 cut(s)	68, 832, 1123, 1531, 1750, 2380, 2386, 2453
Hsp92I	GRCGYC	1 cut(s)	288
HspAI	GCGC	7 cut(s)	82, 138, 175, 277, 288, 676, 2286
KasI	GGCGCC	1 cut(s)	287
Kpn2I	TCCGGA	2 cut(s)	93, 562
KpnI	GGTACC	1 cut(s)	1212
KroI	GCCGGC	1 cut(s)	308
KroNI	GCCGGC	1 cut(s)	310
Ksp22I	TGATCA	1 cut(s)	501
LguI	GCTCTTC	1 cut(s)	264
LmnI	GCTCC	3 cut(s)	89, 172, 2194
LweI	GCATC	8 cut(s)	42, 422, 552, 556, 694, 783, 901, 1930
MaeI	CTAG	4 cut(s)	686, 1731, 2847, 2928
MaeII	ACGT	8 cut(s)	68, 832, 1123, 1531, 1750, 2380, 2386, 2453
MaeIII	GTNAC	9 cut(s)	586, 593, 988, 1064, 1477, 1873, 1925, 2195, 2504
MfeI	CAATTG	2 cut(s)	46, 271
MflI	RGATCY	4 cut(s)	514, 1268, 2277, 2800
MhlI	GDGCHC	2 cut(s)	207, 2386
MlsI	TGGCCA	2 cut(s)	2613, 2661
MluNI	TGGCCA	2 cut(s)	2613, 2661
Mly113I	GGCGCC	1 cut(s)	288
MlyI	GAGTC	5 cut(s)	206, 239, 1622, 1929, 2432
MmeI	TCCRAC	5 cut(s)	273, 643, 1424, 2038, 2052
Mox20I	TGGCCA	2 cut(s)	2613, 2661
MroI	TCCGGA	2 cut(s)	93, 562
MroNI	GCCGGC	1 cut(s)	308
MscI	TGGCCA	2 cut(s)	2613, 2661
MslI	CAYNNNNRTG	2 cut(s)	564, 789
Msp20I	TGGCCA	2 cut(s)	2613, 2661
MspA1I	CMGCKG	3 cut(s)	1496, 2327, 2576
MspCI	CTTAAG	2 cut(s)	191, 2939
MspI	CCGG	6 cut(s)	94, 145, 297, 309, 417, 563
MspR9I	CCNGG	2 cut(s)	164, 2817
MunI	CAATTG	2 cut(s)	46, 271
Mva1269I	GAATGC	3 cut(s)	1034, 1166, 2758
MvaI	CCWGG	2 cut(s)	164, 2817
MvnI	CGCG	2 cut(s)	177, 2480
MwoI	GCNNNNNNNGC	5 cut(s)	285, 326, 682, 713, 2366
NaeI	GCCGGC	1 cut(s)	310
NarI	GGCGCC	1 cut(s)	288
NgoMIV	GCCGGC	1 cut(s)	308
NheI	GCTAGC	1 cut(s)	685
NlaIV	GGNNCC	7 cut(s)	289, 301, 969, 1210, 1688, 2220, 2359
NmeAIII	GCCGAG	2 cut(s)	210, 358
NmuCI	GTSAC	6 cut(s)	593, 1064, 1477, 1925, 2195, 2504
NspI	RCATGY	2 cut(s)	238, 2524
NspV	TTCGAA	1 cut(s)	1989
PagI	TCATGA	2 cut(s)	498, 2443
PaqCI	CACCTGC	1 cut(s)	221
PciSI	GCTCTTC	1 cut(s)	264
PcsI	WCGNNNNNNNCGW	4 cut(s)	330, 643, 1129, 2377
PctI	GAATGC	3 cut(s)	1034, 1166, 2758
PdiI	GCCGGC	1 cut(s)	310
Pfl23II	CGTACG	1 cut(s)	2450
PflMI	CCANNNNNTGG	2 cut(s)	2741, 2816
PfoI	TCCNGGA	1 cut(s)	2815
PinAI	ACCGGT	1 cut(s)	296
Ple19I	CGATCG	1 cut(s)	772
PleI	GAGTC	5 cut(s)	205, 239, 1622, 1928, 2431
PluTI	GGCGCC	1 cut(s)	291
PmaCI	CACGTG	1 cut(s)	2381
PmlI	CACGTG	1 cut(s)	2381
PpsI	GAGTC	5 cut(s)	205, 239, 1622, 1928, 2431
Ppu21I	YACGTR	3 cut(s)	1124, 2381, 2387
PpuMI	RGGWCCY	1 cut(s)	1687
PshAI	GACNNNNGTC	1 cut(s)	630
Psp5II	RGGWCCY	1 cut(s)	1687
Psp6I	CCWGG	2 cut(s)	162, 2815
PspCI	CACGTG	1 cut(s)	2381
PspGI	CCWGG	2 cut(s)	162, 2815
PspLI	CGTACG	1 cut(s)	2450
PspN4I	GGNNCC	7 cut(s)	289, 301, 969, 1210, 1688, 2220, 2359
PspPI	GGNCC	2 cut(s)	1083, 1687
PspPPI	RGGWCCY	1 cut(s)	1687
PstI	CTGCAG	1 cut(s)	1245
PsuI	RGATCY	4 cut(s)	514, 1268, 2277, 2800
PvuI	CGATCG	1 cut(s)	772
PvuII	CAGCTG	3 cut(s)	1496, 2327, 2576
RgaI	GCGATCGC	1 cut(s)	772
RseI	CAYNNNNRTG	2 cut(s)	564, 789
SapI	GCTCTTC	1 cut(s)	264
Sau96I	GGNCC	2 cut(s)	1083, 1687
SbfI	CCTGCAGG	1 cut(s)	1245
ScaI	AGTACT	3 cut(s)	1610, 2776, 2851
SchI	GAGTC	5 cut(s)	206, 239, 1622, 1929, 2432
ScrFI	CCNGG	2 cut(s)	164, 2817
SdaI	CCTGCAGG	1 cut(s)	1245
SduI	GDGCHC	2 cut(s)	207, 2386
SfaAI	GCGATCGC	1 cut(s)	772
SfaNI	GCATC	8 cut(s)	42, 422, 552, 556, 694, 783, 901, 1930
SfcI	CTRYAG	1 cut(s)	1241
SfoI	GGCGCC	1 cut(s)	289
SfuI	TTCGAA	1 cut(s)	1989
SgfI	GCGATCGC	1 cut(s)	772
SinI	GGWCC	2 cut(s)	1083, 1687
SmiMI	CAYNNNNRTG	2 cut(s)	564, 789
SmlI	CTYRAG	4 cut(s)	191, 477, 2262, 2939
SmoI	CTYRAG	4 cut(s)	191, 477, 2262, 2939
SpeI	ACTAGT	1 cut(s)	2846
Sse8387I	CCTGCAGG	1 cut(s)	1245
SsiI	CCGC	5 cut(s)	177, 285, 330, 680, 2480
SspDI	GGCGCC	1 cut(s)	287
SspI	AATATT	1 cut(s)	1362
SspMI	CTAG	4 cut(s)	686, 1731, 2847, 2928
StyD4I	CCNGG	2 cut(s)	162, 2815
StyI	CCWWGG	1 cut(s)	1151
TaaI	ACNGT	4 cut(s)	1487, 1778, 1879, 2871
TaiI	ACGT	8 cut(s)	71, 835, 1126, 1534, 1753, 2383, 2389, 2456
TatI	WGTACW	3 cut(s)	1608, 2774, 2849
TauI	GCSGC	2 cut(s)	288, 332
TscAI	CASTG	3 cut(s)	31, 1490, 1930
TseFI	GTSAC	6 cut(s)	593, 1064, 1477, 1925, 2195, 2504
Tsp45I	GTSAC	6 cut(s)	593, 1064, 1477, 1925, 2195, 2504
TspGWI	ACGGA	2 cut(s)	361, 2523
TspRI	CASTG	3 cut(s)	31, 1490, 1930
Van91I	CCANNNNNTGG	2 cut(s)	2741, 2816
Vha464I	CTTAAG	2 cut(s)	191, 2939
VneI	GTGCAC	1 cut(s)	2382
VpaK11BI	GGWCC	2 cut(s)	1083, 1687
XapI	RAATTY	8 cut(s)	98, 554, 758, 780, 1462, 2144, 2625, 2690
XceI	RCATGY	2 cut(s)	238, 2524
XspI	CTAG	4 cut(s)	686, 1731, 2847, 2928
ZrmI	AGTACT	3 cut(s)	1610, 2776, 2851

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.