Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0002242

Physical Location & Seq

Genomic Coordinates Reverse (-)

48984005 .. 48986351

Gene Structure 2347 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG361900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGTCTCACCAAAAGAAAAGGACTGATGGGACTGCAGTGCAGTATCCTATGTTTATACCTACTACTGAACCGTGTATGACAGTGGCAAAGCTTGCTTTGGTGGATAGAGATGGGAAGTACTCCTCAGCTCTGTCCAAGGAAGTTTCAGTTGACAAGTCTAATGCGAAACGCACTTTGAAGAAGGGGGGTGCAAAGTGGCCTTTGACTGGTGGTGTTCCCAGCCAACTTTCTGATGCTGAAAATTTTTATGTCGAGAGACTATATGTAGCAGGATATCAAGATGGATCTGTTCGAATATGGGATGCCACCTATCCAAATCCGTCGCTTATATATGCTATAGGTCCTAAGGTTGGTATGCTCTCAAAACTTTTGTCAAGTCTACACAAACAATTTTTATGTTATCAAAATCATTATTTTCATTTGACAGTGTACTCGAGACTAAATTTCATAAAGTCATTTTTTTCTTGTTTTTTATGCATGGAAGGTAAAAGGCATCAGATCTATAGGTGCAAATGGAACAGTCTCATCATTGGAATTGTGTTCTCTTACTTTAAAATTAGCTATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0002791 GO:0002792 GO:0002793 GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0008047 GO:0008150 GO:0010646 GO:0010648 GO:0010817 GO:0016020 GO:0017016 GO:0017137 GO:0017157 GO:0019899 GO:0019905 GO:0023051 GO:0023057 GO:0030234 GO:0030695 GO:0031267 GO:0032879 GO:0032880 GO:0033500 GO:0042592 GO:0042593 GO:0043085 GO:0043087 GO:0043547 GO:0044093 GO:0044424 GO:0044464 GO:0046676 GO:0046883 GO:0046888 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048878 GO:0050708 GO:0050709 GO:0050714 GO:0050789 GO:0050790 GO:0050794 GO:0050796 GO:0051020 GO:0051046 GO:0051047 GO:0051048 GO:0051049 GO:0051050 GO:0051051 GO:0051222 GO:0051223 GO:0051224 GO:0051336 GO:0051345 GO:0060589 GO:0060627 GO:0065007 GO:0065008 GO:0065009 GO:0070201 GO:0071944 GO:0090087 GO:0090276 GO:0090278 GO:0098772 GO:1903530 GO:1903531 GO:1903532 GO:1904950 GO:1904951

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANAPC4_WD40 Synaptobrevin

Protein Analysis

189

Amino Acids

21.66

Weight (kDa)

9.56

Isoelectric Point (pI)

28.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002242)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57160 AT5G57160
fragaria_vesca	FvH4_4g07160
malus_domestica	MD16G1247900.v1.1
prunus_persica	Prupe.1G074600_v2.0.a1 Prupe.1G074600_v2.0.a1
pyrus_communis	pycom12g16110 pycom12g16210 pycom16g20800
rosa_chinensis	RchiOBHm_Chr0c22g0500591 RchiOBHm_Chr4g0399311 RchiOBHm_Chr5g0052491 RchiOBHm_Chr7g0206661
rosa_laevigata	RLG00000009274 RLG00000012027 RLG00000013478 RLG00000013735 RLG00000034678
rosa_multiflora	Rmu_co8101330.1_g000001 Rmu_co8329359.1_g000001 Rmu_sc0000924.1_g000031 Rmu_sc0003135.1_g000008
rosa_roxburghii	Rroxscaffold_4G00283390 Rroxscaffold_4G00329320 Rroxscaffold_5G00344240
rosa_rugosa	Rorug04G0016500
rosa_samantha	Rh2AG218900 Rh2BG192100 Rh2BG230700 Rh2CG361900 Rh2DG225100 Rh3BG254200 Rh3DG357600 Rh4AG094200 Rh4AG102100 Rh4BG091600 Rh4CG102400 Rh4CG110300 Rh4DG086300 Rh7DG237100 Rh7DG335000 Rh7DG335200
rosa_wichuraiana	Rw4G007730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	379
AclWI	GGATC	1 cut(s)	292
AcsI	RAATTY	2 cut(s)	241, 442
AfaI	GTAC	2 cut(s)	119, 431
AfiI	CCNNNNNNNGG	2 cut(s)	206, 350
AgsI	TTSAA	1 cut(s)	178
AluBI	AGCT	3 cut(s)	91, 128, 561
AluI	AGCT	3 cut(s)	91, 128, 561
Alw26I	GTCTC	4 cut(s)	9, 250, 430, 527
AlwI	GGATC	1 cut(s)	292
Ama87I	CYCGRG	1 cut(s)	433
AoxI	GGCC	1 cut(s)	197
ApoI	RAATTY	2 cut(s)	241, 442
ArsI	GACNNNNNNTTYG	2 cut(s)	356, 388
AspS9I	GGNCC	1 cut(s)	341
AsuII	TTCGAA	1 cut(s)	292
AvaI	CYCGRG	1 cut(s)	433
AvaII	GGWCC	1 cut(s)	341
AxyI	CCTNAGG	1 cut(s)	345
BbvCI	CCTCAGC	1 cut(s)	124
BccI	CCATC	3 cut(s)	20, 104, 275
BciVI	GTATCC	1 cut(s)	54
BcoDI	GTCTC	4 cut(s)	9, 250, 430, 527
BfmI	CTRYAG	3 cut(s)	33, 336, 502
BfuI	GTATCC	1 cut(s)	54
BglII	AGATCT	1 cut(s)	498
BmcAI	AGTACT	1 cut(s)	119
Bme18I	GGWCC	1 cut(s)	341
BmeT110I	CYCGRG	1 cut(s)	433
BmgT120I	GGNCC	1 cut(s)	341
BmsI	GCATC	3 cut(s)	223, 292, 502
Bpu10I	CCTNAGC	1 cut(s)	124
Bpu14I	TTCGAA	1 cut(s)	292
BsaJI	CCNNGG	1 cut(s)	135
Bsc4I	CCNNNNNNNGG	2 cut(s)	206, 350
Bse1I	ACTGG	1 cut(s)	211
Bse21I	CCTNAGG	1 cut(s)	345
BseDI	CCNNGG	1 cut(s)	135
BseGI	GGATG	1 cut(s)	307
BseLI	CCNNNNNNNGG	2 cut(s)	206, 350
BseMII	CTCAG	1 cut(s)	138
BseNI	ACTGG	1 cut(s)	211
BseRI	GAGGAG	1 cut(s)	112
BseYI	CCCAGC	1 cut(s)	218
BsgI	GTGCAG	1 cut(s)	59
BshFI	GGCC	1 cut(s)	199
BsiHKCI	CYCGRG	1 cut(s)	433
BslFI	GGGAC	1 cut(s)	43
BslI	CCNNNNNNNGG	2 cut(s)	206, 350
BsmAI	GTCTC	4 cut(s)	9, 250, 430, 527
BsmFI	GGGAC	1 cut(s)	43
BsnI	GGCC	1 cut(s)	199
BsoBI	CYCGRG	1 cut(s)	433
Bsp119I	TTCGAA	1 cut(s)	292
Bsp143I	GATC	2 cut(s)	284, 498
BspANI	GGCC	1 cut(s)	199
BspCNI	CTCAG	1 cut(s)	137
BspMAI	CTGCAG	1 cut(s)	37
BspPI	GGATC	1 cut(s)	292
BspT104I	TTCGAA	1 cut(s)	292
BsrI	ACTGG	1 cut(s)	211
BssECI	CCNNGG	1 cut(s)	135
BssMI	GATC	2 cut(s)	284, 498
BssT1I	CCWWGG	1 cut(s)	135
Bst4CI	ACNGT	4 cut(s)	72, 82, 427, 521
BstAPI	GCANNNNNTGC	1 cut(s)	92
BstBI	TTCGAA	1 cut(s)	292
BstC8I	GCNNGC	1 cut(s)	93
BstDEI	CTNAG	2 cut(s)	124, 345
BstF5I	GGATG	1 cut(s)	307
BstKTI	GATC	2 cut(s)	287, 501
BstMAI	GTCTC	4 cut(s)	9, 250, 430, 527
BstMBI	GATC	2 cut(s)	284, 498
BstMWI	GCNNNNNNNGC	1 cut(s)	92
BstSFI	CTRYAG	3 cut(s)	33, 336, 502
BstX2I	RGATCY	2 cut(s)	284, 498
BstYI	RGATCY	2 cut(s)	284, 498
Bsu36I	CCTNAGG	1 cut(s)	345
BsuI	GTATCC	1 cut(s)	54
BsuRI	GGCC	1 cut(s)	199
BtsCI	GGATG	1 cut(s)	307
BtsI	GCAGTG	1 cut(s)	42
BtsIMutI	CAGTG	3 cut(s)	42, 87, 432
Cac8I	GCNNGC	1 cut(s)	93
Cfr13I	GGNCC	1 cut(s)	341
Csp6I	GTAC	2 cut(s)	118, 430
CviAII	CATG	1 cut(s)	478
CviJI	RGCY	5 cut(s)	91, 128, 199, 222, 561
CviKI_1	RGCY	5 cut(s)	91, 128, 199, 222, 561
CviQI	GTAC	2 cut(s)	118, 430
DdeI	CTNAG	2 cut(s)	124, 345
DpnI	GATC	2 cut(s)	286, 500
DpnII	GATC	2 cut(s)	284, 498
DraI	TTTAAA	1 cut(s)	553
Eco130I	CCWWGG	1 cut(s)	135
Eco32I	GATATC	1 cut(s)	275
Eco47I	GGWCC	1 cut(s)	341
Eco81I	CCTNAGG	1 cut(s)	345
Eco88I	CYCGRG	1 cut(s)	433
EcoO109I	RGGNCCY	1 cut(s)	341
EcoRV	GATATC	1 cut(s)	275
EcoT14I	CCWWGG	1 cut(s)	135
EcoT22I	ATGCAT	1 cut(s)	479
ErhI	CCWWGG	1 cut(s)	135
FaeI	CATG	1 cut(s)	481
FaqI	GGGAC	1 cut(s)	43
FatI	CATG	1 cut(s)	477
FblI	GTMKAC	1 cut(s)	379
FokI	GGATG	1 cut(s)	314
GsaI	CCCAGC	1 cut(s)	222
HaeIII	GGCC	1 cut(s)	199
Hin1II	CATG	1 cut(s)	481
HincII	GTYRAC	1 cut(s)	151
HindII	GTYRAC	1 cut(s)	151
HindIII	AAGCTT	1 cut(s)	89
Hpy166II	GTNNAC	3 cut(s)	151, 380, 430
Hpy188I	TCNGA	2 cut(s)	232, 498
Hpy188III	TCNNGA	3 cut(s)	253, 278, 435
Hpy8I	GTNNAC	3 cut(s)	151, 380, 430
Hpy99I	CGWCG	1 cut(s)	325
HpyAV	CCTTC	2 cut(s)	175, 476
HpyCH4III	ACNGT	4 cut(s)	72, 82, 427, 521
HpyCH4V	TGCA	5 cut(s)	35, 40, 191, 477, 510
HpyF10VI	GCNNNNNNNGC	1 cut(s)	92
HpyF3I	CTNAG	2 cut(s)	124, 345
Hsp92II	CATG	1 cut(s)	481
Kzo9I	GATC	2 cut(s)	284, 498
LpnPI	CCDG	3 cut(s)	192, 232, 255
LweI	GCATC	3 cut(s)	223, 292, 502
MalI	GATC	2 cut(s)	286, 500
MboI	GATC	2 cut(s)	284, 498
MboII	GAAGA	1 cut(s)	190
MflI	RGATCY	2 cut(s)	284, 498
MluCI	AATT	5 cut(s)	241, 389, 442, 534, 555
MnlI	CCTC	1 cut(s)	133
Mph1103I	ATGCAT	1 cut(s)	479
MseI	TTAA	1 cut(s)	552
MwoI	GCNNNNNNNGC	1 cut(s)	92
NdeII	GATC	2 cut(s)	284, 498
NlaIII	CATG	1 cut(s)	481
NsiI	ATGCAT	1 cut(s)	479
NspV	TTCGAA	1 cut(s)	292
PaeR7I	CTCGAG	1 cut(s)	433
PpuMI	RGGWCCY	1 cut(s)	341
Psp5II	RGGWCCY	1 cut(s)	341
PspFI	CCCAGC	1 cut(s)	218
PspPI	GGNCC	1 cut(s)	341
PspPPI	RGGWCCY	1 cut(s)	341
PstI	CTGCAG	1 cut(s)	37
PsuI	RGATCY	2 cut(s)	284, 498
RsaI	GTAC	2 cut(s)	119, 431
RsaNI	GTAC	2 cut(s)	118, 430
SaqAI	TTAA	1 cut(s)	552
Sau3AI	GATC	2 cut(s)	284, 498
Sau96I	GGNCC	1 cut(s)	341
ScaI	AGTACT	1 cut(s)	119
SetI	ASST	9 cut(s)	61, 93, 130, 311, 343, 351, 487, 509, 563
SfaNI	GCATC	3 cut(s)	223, 292, 502
SfcI	CTRYAG	3 cut(s)	33, 336, 502
Sfr274I	CTCGAG	1 cut(s)	433
SfuI	TTCGAA	1 cut(s)	292
SinI	GGWCC	1 cut(s)	341
SlaI	CTCGAG	1 cut(s)	433
SmlI	CTYRAG	1 cut(s)	433
SmoI	CTYRAG	1 cut(s)	433
Sse9I	AATT	5 cut(s)	241, 389, 442, 534, 555
StyI	CCWWGG	1 cut(s)	135
TaaI	ACNGT	4 cut(s)	72, 82, 427, 521
TaqI	TCGA	3 cut(s)	252, 292, 434
TasI	AATT	5 cut(s)	241, 389, 442, 534, 555
TatI	WGTACW	2 cut(s)	117, 429
Tru1I	TTAA	1 cut(s)	552
Tru9I	TTAA	1 cut(s)	552
TscAI	CASTG	3 cut(s)	42, 87, 432
TspDTI	ATGAA	2 cut(s)	407, 436
TspGWI	ACGGA	1 cut(s)	309
TspRI	CASTG	3 cut(s)	42, 87, 432
VpaK11BI	GGWCC	1 cut(s)	341
XapI	RAATTY	2 cut(s)	241, 442
XhoI	CTCGAG	1 cut(s)	433
XmiI	GTMKAC	1 cut(s)	379
ZrmI	AGTACT	1 cut(s)	119
Zsp2I	ATGCAT	1 cut(s)	479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.