Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8101330.1

Orthogroup ID

OG0002242

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 595

Gene Structure 595 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8101330.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 313 bp

atggctgctgaattcttgcaggtttttgctgcaccatacagcctgagatttccacgtattgatcgaattagatatgataaaccttggcatgaatgccttgatgtgcaatcatttatagagcttgtagattcaggcaatggtaccacacaaaaggggacagattatggtggcctgcaggatgataaaaagaaacacaagagatcctctaaaaaggaagagaaacgaaatctatctcttgttccctctcatttagttcagactgatgtttctggtgtcaaggaggacagcttaatattttcaaaaatgatgttct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000726 GO:0003674 GO:0003824 GO:0003909 GO:0003910 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005911 GO:0006139 GO:0006259 GO:0006266 GO:0006281 GO:0006289 GO:0006297 GO:0006302 GO:0006303 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009314 GO:0009506 GO:0009628 GO:0009987 GO:0010165 GO:0010212 GO:0016874 GO:0016886 GO:0030054 GO:0032807 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048046 GO:0050896 GO:0051103 GO:0051716 GO:0055044 GO:0071704 GO:0090304 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03450 map03450

Pfam Domains

Protein Families

BRCT_2 DNA_ligase_A_C DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_IV

Protein Analysis

104

Amino Acids

11.97

Weight (kDa)

8.71

Isoelectric Point (pI)

62.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002242)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57160 AT5G57160
fragaria_vesca	FvH4_4g07160
malus_domestica	MD16G1247900.v1.1
prunus_persica	Prupe.1G074600_v2.0.a1 Prupe.1G074600_v2.0.a1
pyrus_communis	pycom12g16110 pycom12g16210 pycom16g20800
rosa_chinensis	RchiOBHm_Chr0c22g0500591 RchiOBHm_Chr4g0399311 RchiOBHm_Chr5g0052491 RchiOBHm_Chr7g0206661
rosa_laevigata	RLG00000009274 RLG00000012027 RLG00000013478 RLG00000013735 RLG00000034678
rosa_multiflora	Rmu_co8101330.1_g000001 Rmu_co8329359.1_g000001 Rmu_sc0000924.1_g000031 Rmu_sc0003135.1_g000008
rosa_roxburghii	Rroxscaffold_4G00283390 Rroxscaffold_4G00329320 Rroxscaffold_5G00344240
rosa_rugosa	Rorug04G0016500
rosa_samantha	Rh2AG218900 Rh2BG192100 Rh2BG230700 Rh2CG361900 Rh2DG225100 Rh3BG254200 Rh3DG357600 Rh4AG094200 Rh4AG102100 Rh4BG091600 Rh4CG102400 Rh4CG110300 Rh4DG086300 Rh7DG237100 Rh7DG335000 Rh7DG335200
rosa_wichuraiana	Rw4G007730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	10
Acc65I	GGTACC	1 cut(s)	140
AccB1I	GGYRCC	1 cut(s)	140
AclWI	GGATC	1 cut(s)	195
AcsI	RAATTY	1 cut(s)	11
AfaI	GTAC	1 cut(s)	142
AgsI	TTSAA	1 cut(s)	300
AluBI	AGCT	2 cut(s)	121, 288
AluI	AGCT	2 cut(s)	121, 288
AlwI	GGATC	1 cut(s)	195
AoxI	GGCC	1 cut(s)	169
ApeKI	GCWGC	2 cut(s)	5, 29
ApoI	RAATTY	1 cut(s)	11
Asp718I	GGTACC	1 cut(s)	140
BanI	GGYRCC	1 cut(s)	140
BbvI	GCAGC	1 cut(s)	16
BfmI	CTRYAG	1 cut(s)	173
BfuAI	ACCTGC	1 cut(s)	10
BisI	GCNGC	2 cut(s)	6, 30
BlsI	GCNGC	2 cut(s)	7, 31
BmiI	GGNNCC	1 cut(s)	142
BsaAI	YACGTR	1 cut(s)	56
BsaJI	CCNNGG	1 cut(s)	83
Bse3DI	GCAATG	1 cut(s)	142
BseDI	CCNNGG	1 cut(s)	83
BseGI	GGATG	1 cut(s)	184
BseMI	GCAATG	1 cut(s)	142
BseMII	CTCAG	1 cut(s)	35
BseXI	GCAGC	1 cut(s)	16
BsgI	GTGCAG	1 cut(s)	15
BshFI	GGCC	1 cut(s)	171
BshNI	GGYRCC	1 cut(s)	140
BslFI	GGGAC	1 cut(s)	169
BsmFI	GGGAC	1 cut(s)	169
BsmI	GAATGC	1 cut(s)	98
BsnI	GGCC	1 cut(s)	171
Bsp143I	GATC	2 cut(s)	61, 200
BspANI	GGCC	1 cut(s)	171
BspCNI	CTCAG	1 cut(s)	36
BspLI	GGNNCC	1 cut(s)	142
BspMAI	CTGCAG	1 cut(s)	177
BspMI	ACCTGC	1 cut(s)	10
BspPI	GGATC	1 cut(s)	195
BspT107I	GGYRCC	1 cut(s)	140
BsrDI	GCAATG	1 cut(s)	142
BssECI	CCNNGG	1 cut(s)	83
BssMI	GATC	2 cut(s)	61, 200
BssT1I	CCWWGG	1 cut(s)	83
Bst6I	CTCTTC	1 cut(s)	210
BstBAI	YACGTR	1 cut(s)	56
BstC8I	GCNNGC	1 cut(s)	173
BstDEI	CTNAG	1 cut(s)	44
BstF5I	GGATG	1 cut(s)	184
BstKTI	GATC	2 cut(s)	64, 203
BstMBI	GATC	2 cut(s)	61, 200
BstSFI	CTRYAG	1 cut(s)	173
BstV1I	GCAGC	1 cut(s)	16
BstX2I	RGATCY	1 cut(s)	200
BstYI	RGATCY	1 cut(s)	200
BsuRI	GGCC	1 cut(s)	171
BtsCI	GGATG	1 cut(s)	184
BveI	ACCTGC	1 cut(s)	10
Cac8I	GCNNGC	1 cut(s)	173
Csp6I	GTAC	1 cut(s)	141
CviAII	CATG	1 cut(s)	89
CviJI	RGCY	5 cut(s)	5, 42, 121, 171, 288
CviKI_1	RGCY	5 cut(s)	5, 42, 121, 171, 288
CviQI	GTAC	1 cut(s)	141
DdeI	CTNAG	1 cut(s)	44
DpnI	GATC	2 cut(s)	63, 202
DpnII	GATC	2 cut(s)	61, 200
Eam1104I	CTCTTC	1 cut(s)	210
EarI	CTCTTC	1 cut(s)	210
Eco130I	CCWWGG	1 cut(s)	83
EcoRI	GAATTC	1 cut(s)	11
EcoT14I	CCWWGG	1 cut(s)	83
ErhI	CCWWGG	1 cut(s)	83
FaeI	CATG	1 cut(s)	92
FaiI	YATR	5 cut(s)	37, 75, 90, 116, 165
FaqI	GGGAC	1 cut(s)	169
FatI	CATG	1 cut(s)	88
Fnu4HI	GCNGC	2 cut(s)	6, 30
FokI	GGATG	1 cut(s)	191
Fsp4HI	GCNGC	2 cut(s)	6, 30
GluI	GCNGC	2 cut(s)	6, 30
HaeIII	GGCC	1 cut(s)	171
Hin1II	CATG	1 cut(s)	92
HinfI	GANTC	1 cut(s)	128
Hpy188I	TCNGA	1 cut(s)	258
HpyCH4IV	ACGT	1 cut(s)	55
HpyCH4V	TGCA	4 cut(s)	19, 32, 106, 175
HpyF3I	CTNAG	1 cut(s)	44
HpySE526I	ACGT	1 cut(s)	55
Hsp92II	CATG	1 cut(s)	92
KpnI	GGTACC	1 cut(s)	144
Kzo9I	GATC	2 cut(s)	61, 200
LpnPI	CCDG	6 cut(s)	5, 56, 117, 161, 185, 255
Lsp1109I	GCAGC	1 cut(s)	16
MaeII	ACGT	1 cut(s)	55
MalI	GATC	2 cut(s)	63, 202
MboI	GATC	2 cut(s)	61, 200
MboII	GAAGA	1 cut(s)	227
MflI	RGATCY	1 cut(s)	200
MluCI	AATT	2 cut(s)	11, 66
MnlI	CCTC	3 cut(s)	214, 253, 274
MseI	TTAA	1 cut(s)	290
Mva1269I	GAATGC	1 cut(s)	98
NdeII	GATC	2 cut(s)	61, 200
NlaIII	CATG	1 cut(s)	92
NlaIV	GGNNCC	1 cut(s)	142
PcsI	WCGNNNNNNNCGW	1 cut(s)	61
PctI	GAATGC	1 cut(s)	98
PfeI	GAWTC	1 cut(s)	128
PkrI	GCNGC	2 cut(s)	7, 31
Ppu21I	YACGTR	1 cut(s)	56
PspN4I	GGNNCC	1 cut(s)	142
PstI	CTGCAG	1 cut(s)	177
PsuI	RGATCY	1 cut(s)	200
RsaI	GTAC	1 cut(s)	142
RsaNI	GTAC	1 cut(s)	141
SaqAI	TTAA	1 cut(s)	290
SatI	GCNGC	2 cut(s)	6, 30
Sau3AI	GATC	2 cut(s)	61, 200
SbfI	CCTGCAGG	1 cut(s)	177
SdaI	CCTGCAGG	1 cut(s)	177
SetI	ASST	5 cut(s)	24, 58, 85, 123, 290
SfcI	CTRYAG	1 cut(s)	173
Sse8387I	CCTGCAGG	1 cut(s)	177
Sse9I	AATT	2 cut(s)	11, 66
SspI	AATATT	1 cut(s)	294
StyI	CCWWGG	1 cut(s)	83
TaiI	ACGT	1 cut(s)	58
TaqI	TCGA	1 cut(s)	64
TasI	AATT	2 cut(s)	11, 66
TfiI	GAWTC	1 cut(s)	128
Tru1I	TTAA	1 cut(s)	290
Tru9I	TTAA	1 cut(s)	290
TseI	GCWGC	2 cut(s)	5, 29
TspDTI	ATGAA	1 cut(s)	105
XapI	RAATTY	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.