Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0002242

Physical Location & Seq

Genomic Coordinates Forward (+)

17356442 .. 17364668

Gene Structure 8227 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG192100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGTGAGAATCTATTCAAATTGTTATGGGTTTGAGTGTTTGAGTCACCTCTCAATTGAAGGTGAAGAAACCTCCCCCCTAAAGCGCTCCAAGTTCCAGAAATTCCTTGACAACTTCTGCAAAGAAAGTGATTACTTCAGTGCAATCCGGCTGATTCTTCTAAACCTCGATCGGGAGCGTGGTAGCTATGGCCTTAAGGAGTCGGTGCTGGCAATTTCGCCCTCGTCGCCGCCAAGGTTAGTTAAGGTGCTGCAATGGAGACAGGGAATTAGTTCAGGTGGACTAATGATTAAGGAGTTGAATGACTTGCTTGATCGTTTGGCATCAGGTGAAAATAGGGCATTGAAGTTGGAAAAGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000726 GO:0003674 GO:0003824 GO:0003909 GO:0003910 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005911 GO:0006139 GO:0006259 GO:0006266 GO:0006281 GO:0006289 GO:0006297 GO:0006302 GO:0006303 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009314 GO:0009506 GO:0009628 GO:0009987 GO:0010165 GO:0010212 GO:0016874 GO:0016886 GO:0030054 GO:0032807 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048046 GO:0050896 GO:0051103 GO:0051716 GO:0055044 GO:0071704 GO:0090304 GO:0140097 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03450 map03450

Pfam Domains

Protein Families

BRCT_2 DNA_ligase_A_C DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_IV

Protein Analysis

120

Amino Acids

13.67

Weight (kDa)

8.82

Isoelectric Point (pI)

42.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002242)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57160 AT5G57160
fragaria_vesca	FvH4_4g07160
malus_domestica	MD16G1247900.v1.1
prunus_persica	Prupe.1G074600_v2.0.a1 Prupe.1G074600_v2.0.a1
pyrus_communis	pycom12g16110 pycom12g16210 pycom16g20800
rosa_chinensis	RchiOBHm_Chr0c22g0500591 RchiOBHm_Chr4g0399311 RchiOBHm_Chr5g0052491 RchiOBHm_Chr7g0206661
rosa_laevigata	RLG00000009274 RLG00000012027 RLG00000013478 RLG00000013735 RLG00000034678
rosa_multiflora	Rmu_co8101330.1_g000001 Rmu_co8329359.1_g000001 Rmu_sc0000924.1_g000031 Rmu_sc0003135.1_g000008
rosa_roxburghii	Rroxscaffold_4G00283390 Rroxscaffold_4G00329320 Rroxscaffold_5G00344240
rosa_rugosa	Rorug04G0016500
rosa_samantha	Rh2AG218900 Rh2BG192100 Rh2BG230700 Rh2CG361900 Rh2DG225100 Rh3BG254200 Rh3DG357600 Rh4AG094200 Rh4AG102100 Rh4BG091600 Rh4CG102400 Rh4CG110300 Rh4DG086300 Rh7DG237100 Rh7DG335000 Rh7DG335200
rosa_wichuraiana	Rw4G007730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	230
AcsI	RAATTY	1 cut(s)	101
AcuI	CTGAAG	1 cut(s)	121
AfeI	AGCGCT	1 cut(s)	86
AfiI	CCNNNNNNNGG	1 cut(s)	172
AflII	CTTAAG	1 cut(s)	194
AgsI	TTSAA	4 cut(s)	18, 59, 301, 346
AluBI	AGCT	1 cut(s)	186
AluI	AGCT	1 cut(s)	186
Alw26I	GTCTC	1 cut(s)	253
Aor51HI	AGCGCT	1 cut(s)	86
AoxI	GGCC	1 cut(s)	190
ApeKI	GCWGC	1 cut(s)	250
ApoI	RAATTY	1 cut(s)	101
Asp700I	GAANNNNTTC	2 cut(s)	13, 271
AspLEI	GCGC	1 cut(s)	87
AsuHPI	GGTGA	4 cut(s)	16, 38, 74, 341
BbvI	GCAGC	1 cut(s)	237
BcoDI	GTCTC	1 cut(s)	253
BfoI	RGCGCY	1 cut(s)	88
BfrI	CTTAAG	1 cut(s)	194
BisI	GCNGC	2 cut(s)	230, 251
BlsI	GCNGC	2 cut(s)	231, 252
BmsI	GCATC	1 cut(s)	332
BsaJI	CCNNGG	1 cut(s)	233
Bsc4I	CCNNNNNNNGG	1 cut(s)	172
Bse3DI	GCAATG	1 cut(s)	260
BseDI	CCNNGG	1 cut(s)	233
BseLI	CCNNNNNNNGG	1 cut(s)	172
BseMI	GCAATG	1 cut(s)	260
BseXI	GCAGC	1 cut(s)	237
Bsh1285I	CGRYCG	1 cut(s)	172
BshFI	GGCC	1 cut(s)	192
BsiEI	CGRYCG	1 cut(s)	172
BsiSI	CCGG	1 cut(s)	148
BslI	CCNNNNNNNGG	1 cut(s)	172
BsmAI	GTCTC	1 cut(s)	253
BsnI	GGCC	1 cut(s)	192
Bsp143I	GATC	2 cut(s)	169, 313
BspACI	CCGC	1 cut(s)	230
BspANI	GGCC	1 cut(s)	192
BspTI	CTTAAG	1 cut(s)	194
BsrDI	GCAATG	1 cut(s)	260
BssECI	CCNNGG	1 cut(s)	233
BssMI	GATC	2 cut(s)	169, 313
BssT1I	CCWWGG	1 cut(s)	233
BstAFI	CTTAAG	1 cut(s)	194
BstC8I	GCNNGC	1 cut(s)	210
BstH2I	RGCGCY	1 cut(s)	88
BstHHI	GCGC	1 cut(s)	87
BstKTI	GATC	2 cut(s)	172, 316
BstMAI	GTCTC	1 cut(s)	253
BstMBI	GATC	2 cut(s)	169, 313
BstMCI	CGRYCG	1 cut(s)	172
BstMWI	GCNNNNNNNGC	1 cut(s)	226
BstV1I	GCAGC	1 cut(s)	237
BsuRI	GGCC	1 cut(s)	192
BtsIMutI	CAGTG	1 cut(s)	145
Cac8I	GCNNGC	1 cut(s)	210
CfoI	GCGC	1 cut(s)	87
CviJI	RGCY	3 cut(s)	151, 186, 192
CviKI_1	RGCY	3 cut(s)	151, 186, 192
DpnI	GATC	2 cut(s)	171, 315
DpnII	GATC	2 cut(s)	169, 313
Eco130I	CCWWGG	1 cut(s)	233
Eco47III	AGCGCT	1 cut(s)	86
Eco57I	CTGAAG	1 cut(s)	121
EcoT14I	CCWWGG	1 cut(s)	233
ErhI	CCWWGG	1 cut(s)	233
FaiI	YATR	2 cut(s)	27, 189
Fnu4HI	GCNGC	2 cut(s)	230, 251
Fsp4HI	GCNGC	2 cut(s)	230, 251
GlaI	GCGC	1 cut(s)	86
GluI	GCNGC	2 cut(s)	230, 251
HaeII	RGCGCY	1 cut(s)	88
HaeIII	GGCC	1 cut(s)	192
HapII	CCGG	1 cut(s)	148
HhaI	GCGC	1 cut(s)	87
Hin6I	GCGC	1 cut(s)	85
HinP1I	GCGC	1 cut(s)	85
HinfI	GANTC	4 cut(s)	9, 43, 154, 200
HpaII	CCGG	1 cut(s)	148
HphI	GGTGA	4 cut(s)	16, 38, 74, 341
Hpy166II	GTNNAC	1 cut(s)	281
Hpy188III	TCNNGA	2 cut(s)	97, 173
Hpy8I	GTNNAC	1 cut(s)	281
Hpy99I	CGWCG	1 cut(s)	229
HpyAV	CCTTC	1 cut(s)	53
HpyCH4V	TGCA	3 cut(s)	120, 143, 253
HpyF10VI	GCNNNNNNNGC	1 cut(s)	226
HspAI	GCGC	1 cut(s)	85
Kzo9I	GATC	2 cut(s)	169, 313
LmnI	GCTCC	2 cut(s)	92, 175
LpnPI	CCDG	6 cut(s)	110, 161, 194, 248, 261, 312
Lsp1109I	GCAGC	1 cut(s)	237
LweI	GCATC	1 cut(s)	332
MaeIII	GTNAC	1 cut(s)	44
MalI	GATC	2 cut(s)	171, 315
MboI	GATC	2 cut(s)	169, 313
MboII	GAAGA	2 cut(s)	77, 149
MfeI	CAATTG	1 cut(s)	54
MluCI	AATT	5 cut(s)	19, 54, 101, 213, 267
MlyI	GAGTC	2 cut(s)	52, 209
MmeI	TCCRAC	1 cut(s)	330
MnlI	CCTC	4 cut(s)	59, 82, 176, 232
MroXI	GAANNNNTTC	2 cut(s)	13, 271
MseI	TTAA	3 cut(s)	195, 243, 291
MspCI	CTTAAG	1 cut(s)	194
MspI	CCGG	1 cut(s)	148
MunI	CAATTG	1 cut(s)	54
MwoI	GCNNNNNNNGC	1 cut(s)	226
NdeII	GATC	2 cut(s)	169, 313
NmuCI	GTSAC	1 cut(s)	44
PdmI	GAANNNNTTC	2 cut(s)	13, 271
PfeI	GAWTC	2 cut(s)	9, 154
PkrI	GCNGC	2 cut(s)	231, 252
Ple19I	CGATCG	1 cut(s)	172
PleI	GAGTC	2 cut(s)	51, 208
PpsI	GAGTC	2 cut(s)	51, 208
PvuI	CGATCG	1 cut(s)	172
SaqAI	TTAA	3 cut(s)	195, 243, 291
SatI	GCNGC	2 cut(s)	230, 251
Sau3AI	GATC	2 cut(s)	169, 313
SchI	GAGTC	2 cut(s)	52, 209
SetI	ASST	9 cut(s)	51, 64, 74, 168, 188, 239, 249, 280, 331
SfaNI	GCATC	1 cut(s)	332
SmlI	CTYRAG	1 cut(s)	194
SmoI	CTYRAG	1 cut(s)	194
Sse9I	AATT	5 cut(s)	19, 54, 101, 213, 267
SsiI	CCGC	1 cut(s)	230
StyI	CCWWGG	1 cut(s)	233
TaqI	TCGA	1 cut(s)	168
TasI	AATT	5 cut(s)	19, 54, 101, 213, 267
TauI	GCSGC	1 cut(s)	232
TfiI	GAWTC	2 cut(s)	9, 154
Tru1I	TTAA	3 cut(s)	195, 243, 291
Tru9I	TTAA	3 cut(s)	195, 243, 291
TscAI	CASTG	1 cut(s)	145
TseFI	GTSAC	1 cut(s)	44
TseI	GCWGC	1 cut(s)	250
Tsp45I	GTSAC	1 cut(s)	44
TspRI	CASTG	1 cut(s)	145
Vha464I	CTTAAG	1 cut(s)	194
XapI	RAATTY	1 cut(s)	101
XmnI	GAANNNNTTC	2 cut(s)	13, 271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.