Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0002242

Physical Location & Seq

Genomic Coordinates Forward (+)

23610261 .. 23611611

Gene Structure 1351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG237100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGTTTTACTTCCAGCTACTGGTGCAATGGAGAATGGTGACACATTGCTTTTCACTTTGACAAATCAGGGACAACTGCATGTCTATGACAAGGCTTGCTGGTCTGCCTTAATGTCTCACCAAAAGAAAAGGATTGATGGGACTGCAGTGCAGTATCCTATGTTTATACCTACTACTAAACCGTGTATGACAGTGGTAAAGCTTGCTTTGGTGGATAGAGATGGGAAATACTCCTCAGCTCTGTCCAAGGAAGTTTTAGTTGACAAGTCTAATGCGAAACACACTTTGAAGAAGGGGGGTGCAAAGTGGCCTTTGACTGGTGGTGTTCCCAGCCAACTTTCTGATGCTGAAAATTTTTATGTCGAGAGACTATATGTAGCAGGATATCAAGATGGATCTGTTCCAATATGGGATGCCACCTATCCAACTCCGTCGCTTATATATGCTATAGGTCCTGAGGTAAAAGGTATCAGATCTACAGGTGCAAATGGAACAGTCTCAGCATTGGAATTGTGTTCTCTTACTTTAAAATTAGCTATTGGTGATGTGTGTGGTCTGGTGCCGCAACGGAGACAGGGACTTAGTTCAGGTGGACTAATGATTAAGGAGTTGAATGACTTGCTTGATCGTTTGGCATCAGGTGAAAATAGGGCATTGAAGTTGGAAAAGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0002791 GO:0002792 GO:0002793 GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0008047 GO:0008150 GO:0010646 GO:0010648 GO:0010817 GO:0016020 GO:0017016 GO:0017137 GO:0017157 GO:0019899 GO:0019905 GO:0023051 GO:0023057 GO:0030234 GO:0030695 GO:0031267 GO:0032879 GO:0032880 GO:0033500 GO:0042592 GO:0042593 GO:0043085 GO:0043087 GO:0043547 GO:0044093 GO:0044424 GO:0044464 GO:0046676 GO:0046883 GO:0046888 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048878 GO:0050708 GO:0050709 GO:0050714 GO:0050789 GO:0050790 GO:0050794 GO:0050796 GO:0051020 GO:0051046 GO:0051047 GO:0051048 GO:0051049 GO:0051050 GO:0051051 GO:0051222 GO:0051223 GO:0051224 GO:0051336 GO:0051345 GO:0060589 GO:0060627 GO:0065007 GO:0065008 GO:0065009 GO:0070201 GO:0071944 GO:0090087 GO:0090276 GO:0090278 GO:0098772 GO:1903530 GO:1903531 GO:1903532 GO:1904950 GO:1904951

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANAPC4_WD40 Synaptobrevin

Protein Analysis

224

Amino Acids

24.18

Weight (kDa)

8.8

Isoelectric Point (pI)

23.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002242)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G57160 AT5G57160
fragaria_vesca	FvH4_4g07160
malus_domestica	MD16G1247900.v1.1
prunus_persica	Prupe.1G074600_v2.0.a1 Prupe.1G074600_v2.0.a1
pyrus_communis	pycom12g16110 pycom12g16210 pycom16g20800
rosa_chinensis	RchiOBHm_Chr0c22g0500591 RchiOBHm_Chr4g0399311 RchiOBHm_Chr5g0052491 RchiOBHm_Chr7g0206661
rosa_laevigata	RLG00000009274 RLG00000012027 RLG00000013478 RLG00000013735 RLG00000034678
rosa_multiflora	Rmu_co8101330.1_g000001 Rmu_co8329359.1_g000001 Rmu_sc0000924.1_g000031 Rmu_sc0003135.1_g000008
rosa_roxburghii	Rroxscaffold_4G00283390 Rroxscaffold_4G00329320 Rroxscaffold_5G00344240
rosa_rugosa	Rorug04G0016500
rosa_samantha	Rh2AG218900 Rh2BG192100 Rh2BG230700 Rh2CG361900 Rh2DG225100 Rh3BG254200 Rh3DG357600 Rh4AG094200 Rh4AG102100 Rh4BG091600 Rh4CG102400 Rh4CG110300 Rh4DG086300 Rh7DG237100 Rh7DG335000 Rh7DG335200
rosa_wichuraiana	Rw4G007730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	559
AccB7I	CCANNNNNTGG	1 cut(s)	20
AciI	CCGC	1 cut(s)	563
AclWI	GGATC	1 cut(s)	403
AcsI	RAATTY	1 cut(s)	352
AfiI	CCNNNNNNNGG	2 cut(s)	20, 317
AgsI	TTSAA	3 cut(s)	289, 613, 658
AluBI	AGCT	5 cut(s)	17, 202, 239, 536, 670
AluI	AGCT	5 cut(s)	17, 202, 239, 536, 670
Alw26I	GTCTC	4 cut(s)	120, 361, 502, 565
AlwI	GGATC	1 cut(s)	403
AlwNI	CAGNNNCTG	1 cut(s)	20
AoxI	GGCC	1 cut(s)	308
ApoI	RAATTY	1 cut(s)	352
AspS9I	GGNCC	1 cut(s)	452
AsuHPI	GGTGA	4 cut(s)	50, 110, 554, 653
AvaII	GGWCC	1 cut(s)	452
AxyI	CCTNAGG	1 cut(s)	456
BanI	GGYRCC	1 cut(s)	559
BbvCI	CCTCAGC	1 cut(s)	235
BccI	CCATC	3 cut(s)	131, 215, 386
BciVI	GTATCC	1 cut(s)	165
BcoDI	GTCTC	4 cut(s)	120, 361, 502, 565
BfmI	CTRYAG	3 cut(s)	144, 447, 477
BfuI	GTATCC	1 cut(s)	165
BglII	AGATCT	1 cut(s)	473
BisI	GCNGC	1 cut(s)	563
BlsI	GCNGC	1 cut(s)	564
Bme18I	GGWCC	1 cut(s)	452
BmgT120I	GGNCC	1 cut(s)	452
BmiI	GGNNCC	1 cut(s)	561
BmsI	GCATC	3 cut(s)	334, 403, 644
Bpu10I	CCTNAGC	1 cut(s)	235
BsaJI	CCNNGG	1 cut(s)	246
Bsc4I	CCNNNNNNNGG	2 cut(s)	20, 317
Bse1I	ACTGG	2 cut(s)	25, 322
Bse21I	CCTNAGG	1 cut(s)	456
Bse3DI	GCAATG	2 cut(s)	33, 44
BseDI	CCNNGG	1 cut(s)	246
BseGI	GGATG	1 cut(s)	418
BseLI	CCNNNNNNNGG	2 cut(s)	20, 317
BseMI	GCAATG	2 cut(s)	33, 44
BseMII	CTCAG	3 cut(s)	249, 447, 513
BseNI	ACTGG	2 cut(s)	25, 322
BseRI	GAGGAG	1 cut(s)	223
BseYI	CCCAGC	1 cut(s)	329
BsgI	GTGCAG	1 cut(s)	170
BshFI	GGCC	1 cut(s)	310
BshNI	GGYRCC	1 cut(s)	559
BslFI	GGGAC	3 cut(s)	84, 154, 591
BslI	CCNNNNNNNGG	2 cut(s)	20, 317
BsmAI	GTCTC	4 cut(s)	120, 361, 502, 565
BsmFI	GGGAC	3 cut(s)	84, 154, 591
BsnI	GGCC	1 cut(s)	310
Bsp143I	GATC	3 cut(s)	395, 473, 625
BspACI	CCGC	1 cut(s)	563
BspANI	GGCC	1 cut(s)	310
BspCNI	CTCAG	3 cut(s)	248, 448, 512
BspLI	GGNNCC	1 cut(s)	561
BspMAI	CTGCAG	1 cut(s)	148
BspPI	GGATC	1 cut(s)	403
BspT107I	GGYRCC	1 cut(s)	559
BsrDI	GCAATG	2 cut(s)	33, 44
BsrI	ACTGG	2 cut(s)	25, 322
BssECI	CCNNGG	1 cut(s)	246
BssMI	GATC	3 cut(s)	395, 473, 625
BssT1I	CCWWGG	1 cut(s)	246
Bst4CI	ACNGT	3 cut(s)	183, 193, 496
BstC8I	GCNNGC	2 cut(s)	97, 204
BstDEI	CTNAG	4 cut(s)	235, 456, 499, 581
BstF5I	GGATG	1 cut(s)	418
BstKTI	GATC	3 cut(s)	398, 476, 628
BstMAI	GTCTC	4 cut(s)	120, 361, 502, 565
BstMBI	GATC	3 cut(s)	395, 473, 625
BstMWI	GCNNNNNNNGC	1 cut(s)	23
BstNSI	RCATGY	1 cut(s)	83
BstSFI	CTRYAG	3 cut(s)	144, 447, 477
BstX2I	RGATCY	2 cut(s)	395, 473
BstYI	RGATCY	2 cut(s)	395, 473
Bsu36I	CCTNAGG	1 cut(s)	456
BsuI	GTATCC	1 cut(s)	165
BsuRI	GGCC	1 cut(s)	310
BtsCI	GGATG	1 cut(s)	418
BtsI	GCAGTG	1 cut(s)	153
BtsIMutI	CAGTG	2 cut(s)	153, 198
Cac8I	GCNNGC	2 cut(s)	97, 204
CaiI	CAGNNNCTG	1 cut(s)	20
Cfr13I	GGNCC	1 cut(s)	452
CviAII	CATG	1 cut(s)	80
CviJI	RGCY	8 cut(s)	17, 95, 202, 239, 310, 333, 536, 670
CviKI_1	RGCY	8 cut(s)	17, 95, 202, 239, 310, 333, 536, 670
DdeI	CTNAG	4 cut(s)	235, 456, 499, 581
DpnI	GATC	3 cut(s)	397, 475, 627
DpnII	GATC	3 cut(s)	395, 473, 625
DraI	TTTAAA	1 cut(s)	528
Eco130I	CCWWGG	1 cut(s)	246
Eco32I	GATATC	1 cut(s)	386
Eco47I	GGWCC	1 cut(s)	452
Eco81I	CCTNAGG	1 cut(s)	456
EcoO109I	RGGNCCY	1 cut(s)	452
EcoRV	GATATC	1 cut(s)	386
EcoT14I	CCWWGG	1 cut(s)	246
ErhI	CCWWGG	1 cut(s)	246
FaeI	CATG	1 cut(s)	83
FaqI	GGGAC	3 cut(s)	84, 154, 591
FatI	CATG	1 cut(s)	79
Fnu4HI	GCNGC	1 cut(s)	563
FokI	GGATG	1 cut(s)	425
Fsp4HI	GCNGC	1 cut(s)	563
GluI	GCNGC	1 cut(s)	563
GsaI	CCCAGC	1 cut(s)	333
HaeIII	GGCC	1 cut(s)	310
Hin1II	CATG	1 cut(s)	83
HincII	GTYRAC	1 cut(s)	262
HindII	GTYRAC	1 cut(s)	262
HindIII	AAGCTT	1 cut(s)	200
HphI	GGTGA	4 cut(s)	50, 110, 554, 653
Hpy166II	GTNNAC	2 cut(s)	262, 593
Hpy188I	TCNGA	2 cut(s)	343, 473
Hpy188III	TCNNGA	3 cut(s)	364, 389, 455
Hpy8I	GTNNAC	2 cut(s)	262, 593
Hpy99I	CGWCG	1 cut(s)	436
HpyAV	CCTTC	1 cut(s)	286
HpyCH4III	ACNGT	3 cut(s)	183, 193, 496
HpyCH4V	TGCA	6 cut(s)	26, 79, 146, 151, 302, 485
HpyF10VI	GCNNNNNNNGC	1 cut(s)	23
HpyF3I	CTNAG	4 cut(s)	235, 456, 499, 581
Hsp92II	CATG	1 cut(s)	83
Kzo9I	GATC	3 cut(s)	395, 473, 625
LweI	GCATC	3 cut(s)	334, 403, 644
MaeIII	GTNAC	1 cut(s)	38
MalI	GATC	3 cut(s)	397, 475, 627
MboI	GATC	3 cut(s)	395, 473, 625
MboII	GAAGA	1 cut(s)	301
MflI	RGATCY	2 cut(s)	395, 473
MluCI	AATT	3 cut(s)	352, 509, 530
MmeI	TCCRAC	2 cut(s)	449, 642
MnlI	CCTC	2 cut(s)	244, 451
MseI	TTAA	3 cut(s)	110, 527, 603
MslI	CAYNNNNRTG	1 cut(s)	84
MwoI	GCNNNNNNNGC	1 cut(s)	23
NdeII	GATC	3 cut(s)	395, 473, 625
NlaIII	CATG	1 cut(s)	83
NlaIV	GGNNCC	1 cut(s)	561
NmuCI	GTSAC	1 cut(s)	38
NspI	RCATGY	1 cut(s)	83
PflMI	CCANNNNNTGG	1 cut(s)	20
PkrI	GCNGC	1 cut(s)	564
PpuMI	RGGWCCY	1 cut(s)	452
Psp5II	RGGWCCY	1 cut(s)	452
PspFI	CCCAGC	1 cut(s)	329
PspN4I	GGNNCC	1 cut(s)	561
PspPI	GGNCC	1 cut(s)	452
PspPPI	RGGWCCY	1 cut(s)	452
PstI	CTGCAG	1 cut(s)	148
PstNI	CAGNNNCTG	1 cut(s)	20
PsuI	RGATCY	2 cut(s)	395, 473
RseI	CAYNNNNRTG	1 cut(s)	84
SaqAI	TTAA	3 cut(s)	110, 527, 603
SatI	GCNGC	1 cut(s)	563
Sau3AI	GATC	3 cut(s)	395, 473, 625
Sau96I	GGNCC	1 cut(s)	452
SfaNI	GCATC	3 cut(s)	334, 403, 644
SfcI	CTRYAG	3 cut(s)	144, 447, 477
SinI	GGWCC	1 cut(s)	452
SmiMI	CAYNNNNRTG	1 cut(s)	84
Sse9I	AATT	3 cut(s)	352, 509, 530
SsiI	CCGC	1 cut(s)	563
StyI	CCWWGG	1 cut(s)	246
TaaI	ACNGT	3 cut(s)	183, 193, 496
TaqI	TCGA	1 cut(s)	363
TasI	AATT	3 cut(s)	352, 509, 530
TauI	GCSGC	1 cut(s)	565
Tru1I	TTAA	3 cut(s)	110, 527, 603
Tru9I	TTAA	3 cut(s)	110, 527, 603
TscAI	CASTG	2 cut(s)	153, 198
TseFI	GTSAC	1 cut(s)	38
Tsp45I	GTSAC	1 cut(s)	38
TspGWI	ACGGA	2 cut(s)	420, 583
TspRI	CASTG	2 cut(s)	153, 198
Van91I	CCANNNNNTGG	1 cut(s)	20
VpaK11BI	GGWCC	1 cut(s)	452
XapI	RAATTY	1 cut(s)	352
XceI	RCATGY	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.