Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002510

Physical Location & Seq

Genomic Coordinates Reverse (-)

24657097 .. 24661241

Gene Structure 4145 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G61330.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1311 bp

ATGGCTGGGGGGTCAAAGAGGTCTAAAAGAGCAAGACTTGACAGTGAATCGGAAGACATAAGCGACCAAGAAAACCTTAAGGCCGAAAGCGACAATGAAGATGATCAATTACCTGATGGGATAGAGGATGATGAAGTAGATAGCATGGAAGATGATGAGGGAGAGAGTGAGGAAGACGATGAAGGAGATACCGAGGAAGATGATGAAGGAGATAGCGAGGAAGATGATGAAGGAGAGAACAAGGAAGACGAGGATGGAGAAAGCGAGGACTTTGAAGATGGAAATGATAAAGAGAGTGAGAGTGGCGATGAAGGTAATGATGACAATAAAGATGCTCAGATGGAAGAGCTTGAGAAAGAGGTCAAGGAGCTTCGTTCACAAGAGCAGGATATATTGAAGAACTTGAAGCGTGATAAGGGTGAAGATGCTGTTAAAGGTCAAGCGGTGAAGAATCAGAAGGCTCTTTGGGATAAGATTCTGGAGTTCAGATTCTTACTTCAGAAAGCATTTGATCGTTCAAACAGATTACCACAGGAGCCTGTGAAATCGTTATTTTGTTCAGAAGATGAGGATGTCTCAACAGCATATACAGATCTAGTTACTTCATCTAAGAAGACATTAGATTCCCTCTTGGAGTTGCAAGAGGCTTTGTTTGAGAAGAACCCCTCGGTTGATCAACAAGTGAATGCAACAGCTAGTGAAGAATCCAATAAATCAGATGCAGAAGATAGCGATGAATGGCAGCGAATATCTGACTTGCAGAAAAGAATGTCTGTGTTCCGAAACAAGGCTGTGGACAAATGGCAGAGAAAAACACAAGTCACAACTGGTGCAGCTGCTATTAAAGGAAAGCTCCACGCCTTTAACCAGAACGTTAGTGAACAGGTTGCTTCCTACATGAGGGATCCAAGTAGAATGATTAAACAGATGCAACAATCAAGATCTACTGTTGCTGTTTTTGGAACTGTCCCTCAGGAAGCCATGGAACCAAATCCAGAGGAAAAACAAGAAGAAGGAGACCCTGAACTTGTGGAAGATGCTGAGTTCTATAGGCAGTTACTAAAGGAGTTTCTCGAGACTATCGATCCAGCTTCCTCAGAGGCGGCTTTCTACGAGATGAAGAAGTTCCAGACGAAGAAGAGGAAAGTTGTGGATCGACGTGCCTCAAAGAGCAGAAAGATCAGGTATAATGTTCATGAGAAGATTGTCAACTTTATGGCTCCACGACCAGCGAAGATTCCTCCAAACACGGCGGATTTGCTTAAGAATCTCTTCGGTCTCAAGACCAGAAACGTTCAGTCTGAAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AATF-Che1 TRAUB

Protein Analysis

436

Amino Acids

49.69

Weight (kDa)

4.44

Isoelectric Point (pI)

59.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AATF-Che1	PF13339	142 - 271	6.2e-33	Apoptosis antagonizing transcription factor
TRAUB	PF08164	350 - 425	8.4e-21	Apoptosis-antagonizing transcription factor, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61330 AT5G61330 AT5G61330
fragaria_vesca	FvH4_7g09370 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810
malus_domestica	MD02G1217000.v1.1 MD02G1263900.v1.1 MD02G1264000.v1.1 MD07G1073400.v1.1 MD07G1101900.v1.1 MD07G1102000.v1.1 MD07G1102300.v1.1 MD07G1103300.v1.1 MD08G1040900.v1.1
prunus_persica	Prupe.2G127200_v2.0.a1 Prupe.2G127200_v2.0.a1 Prupe.2G127200_v2.0.a1 Prupe.2G127200_v2.0.a1
pyrus_communis	pycom02g17860 pycom07g05740 pycom07g05770 pycom07g08340
rosa_chinensis	RchiOBHm_Chr1g0346971
rosa_laevigata	RLG00000028767
rosa_multiflora	Rmu_co8367419.1_g000001 Rmu_sc0001731.1_g000013 Rmu_sc0002705.1_g000017 Rmu_sc0008581.1_g000020
rosa_roxburghii	Rroxscaffold_4G00308010
rosa_samantha	Rh1AG202700 Rh1BG168600 Rh1BG168700 Rh1CG187400 Rh1DG199300 Rh1DG199400
rosa_wichuraiana	Rw1G016980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	443, 1103, 1253
AclI	AACGTT	2 cut(s)	873, 1293
AclWI	GGATC	4 cut(s)	899, 912, 1079, 1161
AcuI	CTGAAG	1 cut(s)	482
AfiI	CCNNNNNNNGG	2 cut(s)	787, 900
AflII	CTTAAG	2 cut(s)	77, 1262
AgsI	TTSAA	4 cut(s)	275, 397, 406, 519
AjiI	CACGTC	1 cut(s)	1160
AluBI	AGCT	7 cut(s)	349, 370, 695, 836, 853, 1091, 1307
AluI	AGCT	7 cut(s)	349, 370, 695, 836, 853, 1091, 1307
Alw26I	GTCTC	4 cut(s)	580, 1011, 1070, 1283
AlwI	GGATC	4 cut(s)	899, 912, 1079, 1161
Ama87I	CYCGRG	1 cut(s)	1073
AoxI	GGCC	1 cut(s)	81
ApeKI	GCWGC	3 cut(s)	742, 833, 836
Asp700I	GAANNNNTTC	2 cut(s)	1124, 1271
AsuHPI	GGTGA	2 cut(s)	431, 457
AvaI	CYCGRG	1 cut(s)	1073
AxyI	CCTNAGG	1 cut(s)	972
BamHI	GGATCC	1 cut(s)	904
BbsI	GAAGAC	4 cut(s)	60, 180, 252, 620
BbvI	GCAGC	3 cut(s)	754, 823, 845
BccI	CCATC	4 cut(s)	110, 248, 272, 334
BceAI	ACGGC	1 cut(s)	1266
BclI	TGATCA	2 cut(s)	103, 673
BcoDI	GTCTC	4 cut(s)	580, 1011, 1070, 1283
BfaI	CTAG	2 cut(s)	596, 696
BfmI	CTRYAG	1 cut(s)	1048
BfrI	CTTAAG	2 cut(s)	77, 1262
BglII	AGATCT	2 cut(s)	592, 941
BisI	GCNGC	4 cut(s)	743, 834, 837, 1104
BlsI	GCNGC	4 cut(s)	744, 835, 838, 1105
BmeT110I	CYCGRG	1 cut(s)	1073
BmgBI	CACGTC	1 cut(s)	1160
BmiI	GGNNCC	4 cut(s)	537, 906, 987, 1221
BmsI	GCATC	5 cut(s)	322, 415, 709, 918, 1027
BpiI	GAAGAC	4 cut(s)	60, 180, 252, 620
BplI	GAGNNNNNCTC	2 cut(s)	560, 592
BpmI	CTGGAG	1 cut(s)	500
BpuEI	CTTGAG	2 cut(s)	371, 1265
Bsa29I	ATCGAT	1 cut(s)	1083
BsaI	GGTCTC	2 cut(s)	1011, 1283
BsaJI	CCNNGG	3 cut(s)	192, 666, 981
Bsc4I	CCNNNNNNNGG	2 cut(s)	787, 900
Bse1I	ACTGG	1 cut(s)	832
Bse21I	CCTNAGG	1 cut(s)	972
BseCI	ATCGAT	1 cut(s)	1083
BseDI	CCNNGG	3 cut(s)	192, 666, 981
BseGI	GGATG	3 cut(s)	133, 259, 577
BseLI	CCNNNNNNNGG	2 cut(s)	787, 900
BseMII	CTCAG	4 cut(s)	350, 986, 1032, 1110
BseNI	ACTGG	1 cut(s)	832
BseXI	GCAGC	3 cut(s)	754, 823, 845
BseYI	CCCAGC	1 cut(s)	5
BsgI	GTGCAG	1 cut(s)	852
BshFI	GGCC	1 cut(s)	83
BshVI	ATCGAT	1 cut(s)	1083
BsiHKCI	CYCGRG	1 cut(s)	1073
BslFI	GGGAC	1 cut(s)	953
BslI	CCNNNNNNNGG	2 cut(s)	787, 900
BsmAI	GTCTC	4 cut(s)	580, 1011, 1070, 1283
BsmFI	GGGAC	1 cut(s)	953
BsmI	GAATGC	1 cut(s)	691
BsnI	GGCC	1 cut(s)	83
Bso31I	GGTCTC	2 cut(s)	1011, 1283
BsoBI	CYCGRG	1 cut(s)	1073
Bsp143I	GATC	9 cut(s)	103, 511, 592, 673, 904, 941, 1084, 1153, 1179
Bsp19I	CCATGG	1 cut(s)	981
BspACI	CCGC	3 cut(s)	443, 1103, 1253
BspANI	GGCC	1 cut(s)	83
BspCNI	CTCAG	4 cut(s)	349, 985, 1033, 1109
BspDI	ATCGAT	1 cut(s)	1083
BspHI	TCATGA	1 cut(s)	1195
BspLI	GGNNCC	4 cut(s)	537, 906, 987, 1221
BspPI	GGATC	4 cut(s)	899, 912, 1079, 1161
BspQI	GCTCTTC	1 cut(s)	339
BspTI	CTTAAG	2 cut(s)	77, 1262
BspTNI	GGTCTC	2 cut(s)	1011, 1283
BsrI	ACTGG	1 cut(s)	832
BssECI	CCNNGG	3 cut(s)	192, 666, 981
BssMI	GATC	9 cut(s)	103, 511, 592, 673, 904, 941, 1084, 1153, 1179
BssT1I	CCWWGG	1 cut(s)	981
Bst4CI	ACNGT	3 cut(s)	44, 949, 967
Bst6I	CTCTTC	3 cut(s)	339, 1133, 1277
BstAFI	CTTAAG	2 cut(s)	77, 1262
BstDEI	CTNAG	5 cut(s)	336, 609, 972, 1041, 1096
BstDSI	CCRYGG	1 cut(s)	981
BstENI	CCTNNNNNAGG	1 cut(s)	898
BstF5I	GGATG	3 cut(s)	133, 259, 577
BstKTI	GATC	9 cut(s)	106, 514, 595, 676, 907, 944, 1087, 1156, 1182
BstMAI	GTCTC	4 cut(s)	580, 1011, 1070, 1283
BstMBI	GATC	9 cut(s)	103, 511, 592, 673, 904, 941, 1084, 1153, 1179
BstSFI	CTRYAG	1 cut(s)	1048
BstV1I	GCAGC	3 cut(s)	754, 823, 845
BstV2I	GAAGAC	4 cut(s)	60, 180, 252, 620
BstX2I	RGATCY	3 cut(s)	592, 904, 941
BstYI	RGATCY	3 cut(s)	592, 904, 941
Bsu15I	ATCGAT	1 cut(s)	1083
Bsu36I	CCTNAGG	1 cut(s)	972
BsuRI	GGCC	1 cut(s)	83
BsuTUI	ATCGAT	1 cut(s)	1083
BtgI	CCRYGG	1 cut(s)	981
BtgZI	GCGATG	2 cut(s)	321, 747
BtrI	CACGTC	1 cut(s)	1160
BtsCI	GGATG	3 cut(s)	133, 259, 577
BtsIMutI	CAGTG	1 cut(s)	49
CciI	TCATGA	1 cut(s)	1195
ClaI	ATCGAT	1 cut(s)	1083
CviAII	CATG	4 cut(s)	145, 898, 982, 1196
DdeI	CTNAG	5 cut(s)	336, 609, 972, 1041, 1096
DpnI	GATC	9 cut(s)	105, 513, 594, 675, 906, 943, 1086, 1155, 1181
DpnII	GATC	9 cut(s)	103, 511, 592, 673, 904, 941, 1084, 1153, 1179
Eam1104I	CTCTTC	3 cut(s)	339, 1133, 1277
EarI	CTCTTC	3 cut(s)	339, 1133, 1277
EciI	GGCGGA	1 cut(s)	1268
Eco130I	CCWWGG	1 cut(s)	981
Eco31I	GGTCTC	2 cut(s)	1011, 1283
Eco57I	CTGAAG	1 cut(s)	482
Eco81I	CCTNAGG	1 cut(s)	972
Eco88I	CYCGRG	1 cut(s)	1073
EcoNI	CCTNNNNNAGG	1 cut(s)	898
EcoT14I	CCWWGG	1 cut(s)	981
ErhI	CCWWGG	1 cut(s)	981
FaeI	CATG	4 cut(s)	148, 901, 985, 1199
FalI	AAGNNNNNCTT	4 cut(s)	60, 92, 1256, 1288
FaqI	GGGAC	1 cut(s)	953
FatI	CATG	4 cut(s)	144, 897, 981, 1195
FbaI	TGATCA	2 cut(s)	103, 673
Fnu4HI	GCNGC	4 cut(s)	743, 834, 837, 1104
FokI	GGATG	3 cut(s)	140, 266, 584
Fsp4HI	GCNGC	4 cut(s)	743, 834, 837, 1104
FspBI	CTAG	2 cut(s)	596, 696
GluI	GCNGC	4 cut(s)	743, 834, 837, 1104
GsaI	CCCAGC	1 cut(s)	9
GsuI	CTGGAG	1 cut(s)	500
HaeIII	GGCC	1 cut(s)	83
Hin1II	CATG	4 cut(s)	148, 901, 985, 1199
HincII	GTYRAC	1 cut(s)	1210
HindII	GTYRAC	1 cut(s)	1210
HindIII	AAGCTT	1 cut(s)	1305
HinfI	GANTC	8 cut(s)	47, 451, 475, 489, 623, 704, 1237, 1267
HphI	GGTGA	2 cut(s)	431, 457
Hpy166II	GTNNAC	4 cut(s)	377, 796, 881, 1210
Hpy188III	TCNNGA	9 cut(s)	479, 939, 974, 995, 1073, 1075, 1129, 1196, 1282
Hpy8I	GTNNAC	4 cut(s)	377, 796, 881, 1210
Hpy99I	CGWCG	1 cut(s)	1161
HpyAV	CCTTC	6 cut(s)	176, 200, 224, 305, 451, 1007
HpyCH4III	ACNGT	3 cut(s)	44, 949, 967
HpyCH4IV	ACGT	3 cut(s)	873, 1159, 1293
HpyCH4V	TGCA	6 cut(s)	640, 689, 722, 760, 833, 931
HpyF3I	CTNAG	5 cut(s)	336, 609, 972, 1041, 1096
HpySE526I	ACGT	3 cut(s)	873, 1159, 1293
Hsp92II	CATG	4 cut(s)	148, 901, 985, 1199
Ksp22I	TGATCA	2 cut(s)	103, 673
Kzo9I	GATC	9 cut(s)	103, 511, 592, 673, 904, 941, 1084, 1153, 1179
LguI	GCTCTTC	1 cut(s)	339
LmnI	GCTCC	4 cut(s)	367, 535, 858, 1225
Lsp1109I	GCAGC	3 cut(s)	754, 823, 845
LweI	GCATC	5 cut(s)	322, 415, 709, 918, 1027
MaeI	CTAG	2 cut(s)	596, 696
MaeII	ACGT	3 cut(s)	873, 1159, 1293
MaeIII	GTNAC	3 cut(s)	598, 820, 1056
MalI	GATC	9 cut(s)	105, 513, 594, 675, 906, 943, 1086, 1155, 1181
MboI	GATC	9 cut(s)	103, 511, 592, 673, 904, 941, 1084, 1153, 1179
MflI	RGATCY	3 cut(s)	592, 904, 941
MluCI	AATT	1 cut(s)	107
MroXI	GAANNNNTTC	2 cut(s)	1124, 1271
MseI	TTAA	7 cut(s)	78, 432, 843, 864, 921, 1263, 1309
MspA1I	CMGCKG	1 cut(s)	836
MspCI	CTTAAG	2 cut(s)	77, 1262
Mva1269I	GAATGC	1 cut(s)	691
NcoI	CCATGG	1 cut(s)	981
NdeII	GATC	9 cut(s)	103, 511, 592, 673, 904, 941, 1084, 1153, 1179
NlaIII	CATG	4 cut(s)	148, 901, 985, 1199
NlaIV	GGNNCC	4 cut(s)	537, 906, 987, 1221
NmuCI	GTSAC	1 cut(s)	820
PaeR7I	CTCGAG	1 cut(s)	1073
PagI	TCATGA	1 cut(s)	1195
PciSI	GCTCTTC	1 cut(s)	339
PcsI	WCGNNNNNNNCGW	1 cut(s)	1080
PctI	GAATGC	1 cut(s)	691
PdmI	GAANNNNTTC	2 cut(s)	1124, 1271
PfeI	GAWTC	8 cut(s)	47, 451, 475, 489, 623, 704, 1237, 1267
PkrI	GCNGC	4 cut(s)	744, 835, 838, 1105
Psp1406I	AACGTT	2 cut(s)	873, 1293
PspFI	CCCAGC	1 cut(s)	5
PspN4I	GGNNCC	4 cut(s)	537, 906, 987, 1221
PsuI	RGATCY	3 cut(s)	592, 904, 941
PvuII	CAGCTG	1 cut(s)	836
SapI	GCTCTTC	1 cut(s)	339
SaqAI	TTAA	7 cut(s)	78, 432, 843, 864, 921, 1263, 1309
SatI	GCNGC	4 cut(s)	743, 834, 837, 1104
Sau3AI	GATC	9 cut(s)	103, 511, 592, 673, 904, 941, 1084, 1153, 1179
SfaNI	GCATC	5 cut(s)	322, 415, 709, 918, 1027
SfcI	CTRYAG	1 cut(s)	1048
Sfr274I	CTCGAG	1 cut(s)	1073
SlaI	CTCGAG	1 cut(s)	1073
SmlI	CTYRAG	5 cut(s)	77, 350, 1073, 1262, 1280
SmoI	CTYRAG	5 cut(s)	77, 350, 1073, 1262, 1280
Sse9I	AATT	1 cut(s)	107
SsiI	CCGC	3 cut(s)	443, 1103, 1253
SspMI	CTAG	2 cut(s)	596, 696
StyI	CCWWGG	1 cut(s)	981
TaaI	ACNGT	3 cut(s)	44, 949, 967
TaiI	ACGT	3 cut(s)	876, 1162, 1296
TaqI	TCGA	3 cut(s)	1074, 1083, 1156
TaqII	GACCGA	1 cut(s)	1265
TasI	AATT	1 cut(s)	107
TauI	GCSGC	1 cut(s)	1106
TfiI	GAWTC	8 cut(s)	47, 451, 475, 489, 623, 704, 1237, 1267
Tru1I	TTAA	7 cut(s)	78, 432, 843, 864, 921, 1263, 1309
Tru9I	TTAA	7 cut(s)	78, 432, 843, 864, 921, 1263, 1309
TscAI	CASTG	1 cut(s)	49
TseFI	GTSAC	1 cut(s)	820
TseI	GCWGC	3 cut(s)	742, 833, 836
Tsp45I	GTSAC	1 cut(s)	820
TspRI	CASTG	1 cut(s)	49
Vha464I	CTTAAG	2 cut(s)	77, 1262
XagI	CCTNNNNNAGG	1 cut(s)	898
XhoI	CTCGAG	1 cut(s)	1073
XmnI	GAANNNNTTC	2 cut(s)	1124, 1271
XspI	CTAG	2 cut(s)	596, 696

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.