Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008581.1

Orthogroup ID

OG0002510

Physical Location & Seq

Genomic Coordinates Reverse (-)

79202 .. 80598

Gene Structure 1397 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008581.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

atggcagttggtaaggtgtacttgagctcaaaacccgtctttccccttcaaagcctcactcttctattgttttgcctgggcaatcacctgttttggtttctgaacaagacacaagggggctcagaagtaatgggaaagccttcaaagcggtcgagaaaggcgcctgaaagtgacagtgattttgagggcgatggtgatttggatagccatgagctaaatatggaggaagaggaggatgaatttgaggacgaggaggatgaaaaatctggtaatgaagaagaatccggtagcggagaagaagaggatgaagaagagggggaggaggaagaagataataaagatgctgagctggaagaccttgagaaacaatacatggatattcggcacgaagagcaagatattctcaagaatctaaagcatcacaagggtgaagatcttcttaaaggtcaagcactgaagaaccaaaaggtgtgttgtttgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AATF-Che1 TRAUB

Protein Analysis

160

Amino Acids

18.28

Weight (kDa)

4.31

Isoelectric Point (pI)

76.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61330 AT5G61330 AT5G61330
fragaria_vesca	FvH4_7g09370 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810
malus_domestica	MD02G1217000.v1.1 MD02G1263900.v1.1 MD02G1264000.v1.1 MD07G1073400.v1.1 MD07G1101900.v1.1 MD07G1102000.v1.1 MD07G1102300.v1.1 MD07G1103300.v1.1 MD08G1040900.v1.1
prunus_persica	Prupe.2G127200_v2.0.a1 Prupe.2G127200_v2.0.a1 Prupe.2G127200_v2.0.a1 Prupe.2G127200_v2.0.a1
pyrus_communis	pycom02g17860 pycom07g05740 pycom07g05770 pycom07g08340
rosa_chinensis	RchiOBHm_Chr1g0346971
rosa_laevigata	RLG00000028767
rosa_multiflora	Rmu_co8367419.1_g000001 Rmu_sc0001731.1_g000013 Rmu_sc0002705.1_g000017 Rmu_sc0008581.1_g000020
rosa_roxburghii	Rroxscaffold_4G00308010
rosa_samantha	Rh1AG202700 Rh1BG168600 Rh1BG168700 Rh1CG187400 Rh1DG199300 Rh1DG199400
rosa_wichuraiana	Rw1G016980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	160
AciI	CCGC	2 cut(s)	148, 291
AcsI	RAATTY	1 cut(s)	239
AcuI	CTGAAG	1 cut(s)	476
AcyI	GRCGYC	1 cut(s)	161
AfaI	GTAC	1 cut(s)	20
AgsI	TTSAA	2 cut(s)	50, 144
AjnI	CCWGG	1 cut(s)	75
AleI	CACNNNNGTG	1 cut(s)	426
AluBI	AGCT	3 cut(s)	27, 214, 349
AluI	AGCT	3 cut(s)	27, 214, 349
Alw21I	GWGCWC	1 cut(s)	29
ApoI	RAATTY	1 cut(s)	239
ArsI	GACNNNNNNTTYG	2 cut(s)	164, 196
Asp700I	GAANNNNTTC	2 cut(s)	139, 435
AspLEI	GCGC	1 cut(s)	163
AsuHPI	GGTGA	3 cut(s)	77, 206, 440
BanI	GGYRCC	1 cut(s)	160
BanII	GRGCYC	2 cut(s)	29, 122
BbsI	GAAGAC	1 cut(s)	360
Bbv12I	GWGCWC	1 cut(s)	29
BccI	CCATC	1 cut(s)	185
BciT130I	CCWGG	1 cut(s)	77
BfoI	RGCGCY	1 cut(s)	164
BglII	AGATCT	1 cut(s)	433
BlpI	GCTNAGC	1 cut(s)	345
Bme1390I	CCNGG	1 cut(s)	77
BmiI	GGNNCC	1 cut(s)	162
BmrFI	CCNGG	1 cut(s)	77
BmsI	GCATC	2 cut(s)	331, 427
BpiI	GAAGAC	1 cut(s)	360
Bpu1102I	GCTNAGC	1 cut(s)	345
BpuEI	CTTGAG	3 cut(s)	43, 380, 389
BsaHI	GRCGYC	1 cut(s)	161
BsaJI	CCNNGG	1 cut(s)	76
BsaWI	WCCGGW	1 cut(s)	284
BseBI	CCWGG	1 cut(s)	77
BseDI	CCNNGG	1 cut(s)	76
BseGI	GGATG	3 cut(s)	241, 262, 310
BseMII	CTCAG	2 cut(s)	135, 336
BseRI	GAGGAG	3 cut(s)	245, 266, 335
Bsh1285I	CGRYCG	1 cut(s)	152
BshNI	GGYRCC	1 cut(s)	160
BsiEI	CGRYCG	1 cut(s)	152
BsiHKAI	GWGCWC	1 cut(s)	29
BsiSI	CCGG	1 cut(s)	285
Bsp1286I	GDGCHC	2 cut(s)	29, 122
Bsp143I	GATC	1 cut(s)	433
Bsp1720I	GCTNAGC	1 cut(s)	345
BspACI	CCGC	2 cut(s)	148, 291
BspCNI	CTCAG	2 cut(s)	134, 337
BspLI	GGNNCC	1 cut(s)	162
BspQI	GCTCTTC	1 cut(s)	384
BspT107I	GGYRCC	1 cut(s)	160
BssECI	CCNNGG	1 cut(s)	76
BssMI	GATC	1 cut(s)	433
BssNI	GRCGYC	1 cut(s)	161
Bst2UI	CCWGG	1 cut(s)	77
Bst4CI	ACNGT	1 cut(s)	176
Bst6I	CTCTTC	5 cut(s)	66, 222, 294, 306, 384
BstACI	GRCGYC	1 cut(s)	161
BstDEI	CTNAG	2 cut(s)	121, 345
BstF5I	GGATG	3 cut(s)	241, 262, 310
BstH2I	RGCGCY	1 cut(s)	164
BstHHI	GCGC	1 cut(s)	163
BstKTI	GATC	1 cut(s)	436
BstMBI	GATC	1 cut(s)	433
BstMCI	CGRYCG	1 cut(s)	152
BstMWI	GCNNNNNNNGC	2 cut(s)	145, 391
BstNI	CCWGG	1 cut(s)	77
BstSCI	CCNGG	1 cut(s)	75
BstV2I	GAAGAC	1 cut(s)	360
BstX2I	RGATCY	1 cut(s)	433
BstYI	RGATCY	1 cut(s)	433
BtgZI	GCGATG	1 cut(s)	204
BtsCI	GGATG	3 cut(s)	241, 262, 310
BtsIMutI	CAGTG	2 cut(s)	181, 452
CfoI	GCGC	1 cut(s)	163
Csp6I	GTAC	1 cut(s)	19
CviAII	CATG	2 cut(s)	209, 373
CviJI	RGCY	7 cut(s)	27, 54, 120, 139, 207, 214, 349
CviKI_1	RGCY	7 cut(s)	27, 54, 120, 139, 207, 214, 349
CviQI	GTAC	1 cut(s)	19
DdeI	CTNAG	2 cut(s)	121, 345
DinI	GGCGCC	1 cut(s)	162
DpnI	GATC	1 cut(s)	435
DpnII	GATC	1 cut(s)	433
Eam1104I	CTCTTC	5 cut(s)	66, 222, 294, 306, 384
EarI	CTCTTC	5 cut(s)	66, 222, 294, 306, 384
Ecl136II	GAGCTC	1 cut(s)	27
Eco24I	GRGCYC	2 cut(s)	29, 122
Eco53kI	GAGCTC	1 cut(s)	27
Eco57I	CTGAAG	1 cut(s)	476
EcoICRI	GAGCTC	1 cut(s)	27
EcoRII	CCWGG	1 cut(s)	75
EcoT38I	GRGCYC	2 cut(s)	29, 122
EgeI	GGCGCC	1 cut(s)	162
EheI	GGCGCC	1 cut(s)	162
FaeI	CATG	2 cut(s)	212, 376
FaiI	YATR	3 cut(s)	210, 221, 374
FalI	AAGNNNNNCTT	3 cut(s)	37, 423, 455
FatI	CATG	2 cut(s)	208, 372
FokI	GGATG	3 cut(s)	248, 269, 317
FriOI	GRGCYC	2 cut(s)	29, 122
GlaI	GCGC	1 cut(s)	162
HaeII	RGCGCY	1 cut(s)	164
HapII	CCGG	1 cut(s)	285
HhaI	GCGC	1 cut(s)	163
Hin1I	GRCGYC	1 cut(s)	161
Hin1II	CATG	2 cut(s)	212, 376
Hin6I	GCGC	1 cut(s)	161
HinP1I	GCGC	1 cut(s)	161
HinfI	GANTC	2 cut(s)	281, 409
HpaII	CCGG	1 cut(s)	285
HphI	GGTGA	3 cut(s)	77, 206, 440
Hpy166II	GTNNAC	1 cut(s)	19
Hpy188I	TCNGA	2 cut(s)	102, 124
Hpy188III	TCNNGA	2 cut(s)	153, 406
Hpy8I	GTNNAC	1 cut(s)	19
HpyAV	CCTTC	2 cut(s)	56, 150
HpyCH4III	ACNGT	1 cut(s)	176
HpyF10VI	GCNNNNNNNGC	2 cut(s)	145, 391
HpyF3I	CTNAG	2 cut(s)	121, 345
Hsp92I	GRCGYC	1 cut(s)	161
Hsp92II	CATG	2 cut(s)	212, 376
HspAI	GCGC	1 cut(s)	161
KasI	GGCGCC	1 cut(s)	160
Kzo9I	GATC	1 cut(s)	433
LguI	GCTCTTC	1 cut(s)	384
LpnPI	CCDG	7 cut(s)	62, 89, 101, 177, 252, 298, 335
LweI	GCATC	2 cut(s)	331, 427
MaeIII	GTNAC	1 cut(s)	170
MalI	GATC	1 cut(s)	435
MboI	GATC	1 cut(s)	433
MflI	RGATCY	1 cut(s)	433
MhlI	GDGCHC	2 cut(s)	29, 122
MluCI	AATT	1 cut(s)	239
Mly113I	GGCGCC	1 cut(s)	161
MroXI	GAANNNNTTC	2 cut(s)	139, 435
MseI	TTAA	1 cut(s)	441
MslI	CAYNNNNRTG	1 cut(s)	426
MspI	CCGG	1 cut(s)	285
MspR9I	CCNGG	1 cut(s)	77
MvaI	CCWGG	1 cut(s)	77
MwoI	GCNNNNNNNGC	2 cut(s)	145, 391
NarI	GGCGCC	1 cut(s)	161
NdeII	GATC	1 cut(s)	433
NlaIII	CATG	2 cut(s)	212, 376
NlaIV	GGNNCC	1 cut(s)	162
NmuCI	GTSAC	1 cut(s)	170
OliI	CACNNNNGTG	1 cut(s)	426
PciSI	GCTCTTC	1 cut(s)	384
PdmI	GAANNNNTTC	2 cut(s)	139, 435
PfeI	GAWTC	2 cut(s)	281, 409
PluTI	GGCGCC	1 cut(s)	164
Psp124BI	GAGCTC	1 cut(s)	29
Psp6I	CCWGG	1 cut(s)	75
PspGI	CCWGG	1 cut(s)	75
PspN4I	GGNNCC	1 cut(s)	162
PsuI	RGATCY	1 cut(s)	433
RsaI	GTAC	1 cut(s)	20
RsaNI	GTAC	1 cut(s)	19
RseI	CAYNNNNRTG	1 cut(s)	426
SacI	GAGCTC	1 cut(s)	29
SapI	GCTCTTC	1 cut(s)	384
SaqAI	TTAA	1 cut(s)	441
Sau3AI	GATC	1 cut(s)	433
ScrFI	CCNGG	1 cut(s)	77
SduI	GDGCHC	2 cut(s)	29, 122
SetI	ASST	8 cut(s)	18, 29, 90, 216, 351, 360, 448, 471
SfaNI	GCATC	2 cut(s)	331, 427
SfoI	GGCGCC	1 cut(s)	162
SmiMI	CAYNNNNRTG	1 cut(s)	426
SmlI	CTYRAG	3 cut(s)	22, 359, 404
SmoI	CTYRAG	3 cut(s)	22, 359, 404
Sse9I	AATT	1 cut(s)	239
SsiI	CCGC	2 cut(s)	148, 291
SspDI	GGCGCC	1 cut(s)	160
SstI	GAGCTC	1 cut(s)	29
StyD4I	CCNGG	1 cut(s)	75
TaaI	ACNGT	1 cut(s)	176
TaqI	TCGA	1 cut(s)	152
TasI	AATT	1 cut(s)	239
TatI	WGTACW	1 cut(s)	18
TfiI	GAWTC	2 cut(s)	281, 409
Tru1I	TTAA	1 cut(s)	441
Tru9I	TTAA	1 cut(s)	441
TscAI	CASTG	2 cut(s)	181, 459
TseFI	GTSAC	1 cut(s)	170
Tsp45I	GTSAC	1 cut(s)	170
TspDTI	ATGAA	4 cut(s)	252, 273, 288, 321
TspRI	CASTG	2 cut(s)	181, 459
XapI	RAATTY	1 cut(s)	239
XmnI	GAANNNNTTC	2 cut(s)	139, 435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.