Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0002510

Physical Location & Seq

Genomic Coordinates Reverse (-)

26990106 .. 26991783

Gene Structure 1678 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG168600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGAGAGATCCAAGCAGAATGGTTAAACAGATGCAGATGAGGCGATCGGCAGTTGGTGTATTTGGGACTGTTCTTAAGGGGGAGGATACTCCAAAGGGAGAGGAATCGCAATCTGATGCTGCTGAGCAAGCTGATGGTGACCCTGAACTTTTGGATGACTCGGAGTTTTACCAGCAATTACTAAAAGAATTTTTTGAGACAATTGACCCAACATCTTCTGAGACGGCCTTTTATTCACTGAAAAAGATGCAGTCTAAGAAGAGGAAGATTGTTGATAGGCGAGCCTCAAAGAGTCGTAAGATAAGGTATAATGTTCATGAGAAGATTGTAAATTTCATGGCTCCAGAGCCTAGGGTTCTTCCTCCTATGTTCCCTGACCTCACTTGTTTGTTCGGAATGAAGAACTCAAAACCAGCTTCTGTAGTGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AATF-Che1 TRAUB

Protein Analysis

143

Amino Acids

16.35

Weight (kDa)

8.99

Isoelectric Point (pI)

51.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TRAUB	PF08164	57 - 118	2.1e-21	Apoptosis-antagonizing transcription factor, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61330 AT5G61330 AT5G61330
fragaria_vesca	FvH4_7g09370 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810
malus_domestica	MD02G1217000.v1.1 MD02G1263900.v1.1 MD02G1264000.v1.1 MD07G1073400.v1.1 MD07G1101900.v1.1 MD07G1102000.v1.1 MD07G1102300.v1.1 MD07G1103300.v1.1 MD08G1040900.v1.1
prunus_persica	Prupe.2G127200_v2.0.a1 Prupe.2G127200_v2.0.a1 Prupe.2G127200_v2.0.a1 Prupe.2G127200_v2.0.a1
pyrus_communis	pycom02g17860 pycom07g05740 pycom07g05770 pycom07g08340
rosa_chinensis	RchiOBHm_Chr1g0346971
rosa_laevigata	RLG00000028767
rosa_multiflora	Rmu_co8367419.1_g000001 Rmu_sc0001731.1_g000013 Rmu_sc0002705.1_g000017 Rmu_sc0008581.1_g000020
rosa_roxburghii	Rroxscaffold_4G00308010
rosa_samantha	Rh1AG202700 Rh1BG168600 Rh1BG168700 Rh1CG187400 Rh1DG199300 Rh1DG199400
rosa_wichuraiana	Rw1G016980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	2
AcsI	RAATTY	2 cut(s)	188, 331
AflII	CTTAAG	1 cut(s)	74
AluBI	AGCT	2 cut(s)	131, 416
AluI	AGCT	2 cut(s)	131, 416
Alw26I	GTCTC	2 cut(s)	191, 215
AlwI	GGATC	1 cut(s)	2
AlwNI	CAGNNNCTG	1 cut(s)	419
AoxI	GGCC	1 cut(s)	225
ApeKI	GCWGC	1 cut(s)	119
ApoI	RAATTY	2 cut(s)	188, 331
AspA2I	CCTAGG	1 cut(s)	350
AsuHPI	GGTGA	1 cut(s)	149
AvrII	CCTAGG	1 cut(s)	350
BbvI	GCAGC	1 cut(s)	106
BccI	CCATC	1 cut(s)	128
BceAI	ACGGC	1 cut(s)	240
BciVI	GTATCC	1 cut(s)	79
BcoDI	GTCTC	2 cut(s)	191, 215
BfaI	CTAG	1 cut(s)	351
BfmI	CTRYAG	1 cut(s)	420
BfrI	CTTAAG	1 cut(s)	74
BfuI	GTATCC	1 cut(s)	79
BisI	GCNGC	1 cut(s)	120
BlnI	CCTAGG	1 cut(s)	350
BlpI	GCTNAGC	1 cut(s)	123
BlsI	GCNGC	1 cut(s)	121
BmiI	GGNNCC	1 cut(s)	342
BmsI	GCATC	3 cut(s)	21, 106, 237
BpmI	CTGGAG	1 cut(s)	327
Bpu1102I	GCTNAGC	1 cut(s)	123
BsaJI	CCNNGG	1 cut(s)	350
BseDI	CCNNGG	1 cut(s)	350
BseGI	GGATG	1 cut(s)	160
BseMII	CTCAG	2 cut(s)	114, 210
BseXI	GCAGC	1 cut(s)	106
Bsh1285I	CGRYCG	1 cut(s)	47
BshFI	GGCC	1 cut(s)	227
BsiEI	CGRYCG	1 cut(s)	47
BslFI	GGGAC	1 cut(s)	79
BsmAI	GTCTC	2 cut(s)	191, 215
BsmBI	CGTCTC	1 cut(s)	215
BsmFI	GGGAC	1 cut(s)	79
BsnI	GGCC	1 cut(s)	227
Bsp143I	GATC	2 cut(s)	7, 44
Bsp1720I	GCTNAGC	1 cut(s)	123
BspANI	GGCC	1 cut(s)	227
BspCNI	CTCAG	2 cut(s)	115, 211
BspHI	TCATGA	1 cut(s)	316
BspLI	GGNNCC	1 cut(s)	342
BspPI	GGATC	1 cut(s)	2
BspTI	CTTAAG	1 cut(s)	74
BssECI	CCNNGG	1 cut(s)	350
BssMI	GATC	2 cut(s)	7, 44
BssT1I	CCWWGG	1 cut(s)	350
Bst4CI	ACNGT	1 cut(s)	70
Bst6I	CTCTTC	1 cut(s)	254
BstAFI	CTTAAG	1 cut(s)	74
BstC8I	GCNNGC	2 cut(s)	129, 282
BstDEI	CTNAG	3 cut(s)	123, 219, 255
BstEII	GGTNACC	1 cut(s)	137
BstF5I	GGATG	1 cut(s)	160
BstKTI	GATC	2 cut(s)	10, 47
BstMAI	GTCTC	2 cut(s)	191, 215
BstMBI	GATC	2 cut(s)	7, 44
BstMCI	CGRYCG	1 cut(s)	47
BstMWI	GCNNNNNNNGC	2 cut(s)	40, 128
BstPI	GGTNACC	1 cut(s)	137
BstSFI	CTRYAG	1 cut(s)	420
BstV1I	GCAGC	1 cut(s)	106
BstX2I	RGATCY	1 cut(s)	7
BstYI	RGATCY	1 cut(s)	7
BsuI	GTATCC	1 cut(s)	79
BsuRI	GGCC	1 cut(s)	227
BtsCI	GGATG	1 cut(s)	160
BtsIMutI	CAGTG	1 cut(s)	236
Cac8I	GCNNGC	2 cut(s)	129, 282
CaiI	CAGNNNCTG	1 cut(s)	419
CciI	TCATGA	1 cut(s)	316
CviAII	CATG	2 cut(s)	317, 337
CviJI	RGCY	6 cut(s)	131, 227, 284, 341, 349, 416
CviKI_1	RGCY	6 cut(s)	131, 227, 284, 341, 349, 416
DdeI	CTNAG	3 cut(s)	123, 219, 255
DpnI	GATC	2 cut(s)	9, 46
DpnII	GATC	2 cut(s)	7, 44
Eam1104I	CTCTTC	1 cut(s)	254
EarI	CTCTTC	1 cut(s)	254
Eco130I	CCWWGG	1 cut(s)	350
Eco91I	GGTNACC	1 cut(s)	137
EcoO65I	GGTNACC	1 cut(s)	137
EcoT14I	CCWWGG	1 cut(s)	350
ErhI	CCWWGG	1 cut(s)	350
Esp3I	CGTCTC	1 cut(s)	215
FaeI	CATG	2 cut(s)	320, 340
FaiI	YATR	4 cut(s)	309, 318, 338, 368
FaqI	GGGAC	1 cut(s)	79
FatI	CATG	2 cut(s)	316, 336
Fnu4HI	GCNGC	1 cut(s)	120
FokI	GGATG	1 cut(s)	167
Fsp4HI	GCNGC	1 cut(s)	120
FspBI	CTAG	1 cut(s)	351
GluI	GCNGC	1 cut(s)	120
GsuI	CTGGAG	1 cut(s)	327
HaeIII	GGCC	1 cut(s)	227
Hin1II	CATG	2 cut(s)	320, 340
HinfI	GANTC	3 cut(s)	104, 158, 292
HphI	GGTGA	1 cut(s)	149
Hpy188I	TCNGA	4 cut(s)	115, 163, 220, 395
Hpy188III	TCNNGA	2 cut(s)	317, 344
HpyCH4III	ACNGT	1 cut(s)	70
HpyCH4V	TGCA	3 cut(s)	34, 250, 427
HpyF10VI	GCNNNNNNNGC	2 cut(s)	40, 128
HpyF3I	CTNAG	3 cut(s)	123, 219, 255
Hsp92II	CATG	2 cut(s)	320, 340
Kzo9I	GATC	2 cut(s)	7, 44
LmnI	GCTCC	1 cut(s)	346
LpnPI	CCDG	5 cut(s)	156, 185, 357, 387, 426
Lsp1109I	GCAGC	1 cut(s)	106
LweI	GCATC	3 cut(s)	21, 106, 237
MaeI	CTAG	1 cut(s)	351
MaeIII	GTNAC	1 cut(s)	137
MalI	GATC	2 cut(s)	9, 46
MboI	GATC	2 cut(s)	7, 44
MboII	GAAGA	6 cut(s)	207, 271, 277, 334, 350, 412
MfeI	CAATTG	1 cut(s)	201
MflI	RGATCY	1 cut(s)	7
MluCI	AATT	4 cut(s)	176, 188, 201, 331
MlyI	GAGTC	2 cut(s)	152, 301
MnlI	CCTC	7 cut(s)	33, 76, 94, 255, 295, 372, 389
MseI	TTAA	2 cut(s)	24, 75
MspCI	CTTAAG	1 cut(s)	74
MunI	CAATTG	1 cut(s)	201
MwoI	GCNNNNNNNGC	2 cut(s)	40, 128
NdeII	GATC	2 cut(s)	7, 44
NlaIII	CATG	2 cut(s)	320, 340
NlaIV	GGNNCC	1 cut(s)	342
NmuCI	GTSAC	1 cut(s)	137
PagI	TCATGA	1 cut(s)	316
PfeI	GAWTC	1 cut(s)	104
PkrI	GCNGC	1 cut(s)	121
Ple19I	CGATCG	1 cut(s)	47
PleI	GAGTC	2 cut(s)	152, 300
PpsI	GAGTC	2 cut(s)	152, 300
PspEI	GGTNACC	1 cut(s)	137
PspN4I	GGNNCC	1 cut(s)	342
PstNI	CAGNNNCTG	1 cut(s)	419
PsuI	RGATCY	1 cut(s)	7
PvuI	CGATCG	1 cut(s)	47
SaqAI	TTAA	2 cut(s)	24, 75
SatI	GCNGC	1 cut(s)	120
Sau3AI	GATC	2 cut(s)	7, 44
SchI	GAGTC	2 cut(s)	152, 301
SetI	ASST	4 cut(s)	133, 308, 381, 418
SfaNI	GCATC	3 cut(s)	21, 106, 237
SfcI	CTRYAG	1 cut(s)	420
SmlI	CTYRAG	1 cut(s)	74
SmoI	CTYRAG	1 cut(s)	74
Sse9I	AATT	4 cut(s)	176, 188, 201, 331
SspMI	CTAG	1 cut(s)	351
StyI	CCWWGG	1 cut(s)	350
TaaI	ACNGT	1 cut(s)	70
TasI	AATT	4 cut(s)	176, 188, 201, 331
TfiI	GAWTC	1 cut(s)	104
Tru1I	TTAA	2 cut(s)	24, 75
Tru9I	TTAA	2 cut(s)	24, 75
TscAI	CASTG	1 cut(s)	243
TseFI	GTSAC	1 cut(s)	137
TseI	GCWGC	1 cut(s)	119
Tsp45I	GTSAC	1 cut(s)	137
TspDTI	ATGAA	3 cut(s)	305, 325, 413
TspRI	CASTG	1 cut(s)	243
Vha464I	CTTAAG	1 cut(s)	74
XapI	RAATTY	2 cut(s)	188, 331
XmaJI	CCTAGG	1 cut(s)	350
XspI	CTAG	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.