Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0002510

Physical Location & Seq

Genomic Coordinates Forward (+)

31798404 .. 31799044

Gene Structure 641 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1264000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGATTGCATTTGAATGTGATATACGGTTTATCCAAATCTATAAGCGTTTCGAGACAGCCTTATATTCTTTGAAAAAGTTGCATACGAAGAAGAGGAAGATTGTTGACAGAAGAGCCTCTAAGAGTCGCAAGATAAGGTACAATGTTCACAAGAAGATAGTAAATTTCATGGCCCCAGAGACTATGGCCATTCCTCCGATGCTTCCTGACCTCAATAATTTGTTCGGGTTGAAGAAGCAAAAACCAGCTTCCGTAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AATF-Che1 TRAUB

Protein Analysis

87

Amino Acids

10.16

Weight (kDa)

10.45

Isoelectric Point (pI)

36.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TRAUB	PF08164	22 - 61	2.5e-16	Apoptosis-antagonizing transcription factor, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61330 AT5G61330 AT5G61330
fragaria_vesca	FvH4_7g09370 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810
malus_domestica	MD02G1217000.v1.1 MD02G1263900.v1.1 MD02G1264000.v1.1 MD07G1073400.v1.1 MD07G1101900.v1.1 MD07G1102000.v1.1 MD07G1102300.v1.1 MD07G1103300.v1.1 MD08G1040900.v1.1
prunus_persica	Prupe.2G127200_v2.0.a1 Prupe.2G127200_v2.0.a1 Prupe.2G127200_v2.0.a1 Prupe.2G127200_v2.0.a1
pyrus_communis	pycom02g17860 pycom07g05740 pycom07g05770 pycom07g08340
rosa_chinensis	RchiOBHm_Chr1g0346971
rosa_laevigata	RLG00000028767
rosa_multiflora	Rmu_co8367419.1_g000001 Rmu_sc0001731.1_g000013 Rmu_sc0002705.1_g000017 Rmu_sc0008581.1_g000020
rosa_roxburghii	Rroxscaffold_4G00308010
rosa_samantha	Rh1AG202700 Rh1BG168600 Rh1BG168700 Rh1CG187400 Rh1DG199300 Rh1DG199400
rosa_wichuraiana	Rw1G016980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	186
AcsI	RAATTY	1 cut(s)	163
AfaI	GTAC	1 cut(s)	140
AgsI	TTSAA	3 cut(s)	14, 73, 232
AluBI	AGCT	1 cut(s)	248
AluI	AGCT	1 cut(s)	248
Alw26I	GTCTC	2 cut(s)	47, 173
AoxI	GGCC	2 cut(s)	171, 186
ApoI	RAATTY	1 cut(s)	163
AspS9I	GGNCC	1 cut(s)	172
BalI	TGGCCA	1 cut(s)	188
BcoDI	GTCTC	2 cut(s)	47, 173
BmgT120I	GGNCC	1 cut(s)	172
BmiI	GGNNCC	1 cut(s)	174
BmsI	GCATC	1 cut(s)	189
BshFI	GGCC	2 cut(s)	173, 188
BsmAI	GTCTC	2 cut(s)	47, 173
BsnI	GGCC	2 cut(s)	173, 188
BspANI	GGCC	2 cut(s)	173, 188
BspLI	GGNNCC	1 cut(s)	174
BspQI	GCTCTTC	1 cut(s)	106
Bst4CI	ACNGT	1 cut(s)	27
Bst6I	CTCTTC	2 cut(s)	86, 106
BstDEI	CTNAG	1 cut(s)	120
BstMAI	GTCTC	2 cut(s)	47, 173
BsuRI	GGCC	2 cut(s)	173, 188
Cfr13I	GGNCC	1 cut(s)	172
Csp6I	GTAC	1 cut(s)	139
CviAII	CATG	1 cut(s)	169
CviJI	RGCY	5 cut(s)	59, 116, 173, 188, 248
CviKI_1	RGCY	5 cut(s)	59, 116, 173, 188, 248
CviQI	GTAC	1 cut(s)	139
DdeI	CTNAG	1 cut(s)	120
EaeI	YGGCCR	1 cut(s)	186
Eam1104I	CTCTTC	2 cut(s)	86, 106
EarI	CTCTTC	2 cut(s)	86, 106
FaeI	CATG	1 cut(s)	172
FaiI	YATR	6 cut(s)	23, 42, 64, 84, 170, 185
FatI	CATG	1 cut(s)	168
HaeIII	GGCC	2 cut(s)	173, 188
Hin1II	CATG	1 cut(s)	172
HincII	GTYRAC	1 cut(s)	106
HindII	GTYRAC	1 cut(s)	106
HinfI	GANTC	1 cut(s)	124
Hpy166II	GTNNAC	2 cut(s)	106, 148
Hpy188I	TCNGA	1 cut(s)	198
Hpy188III	TCNNGA	2 cut(s)	52, 206
Hpy8I	GTNNAC	2 cut(s)	106, 148
HpyCH4III	ACNGT	1 cut(s)	27
HpyCH4V	TGCA	2 cut(s)	8, 82
HpyF3I	CTNAG	1 cut(s)	120
Hsp92II	CATG	1 cut(s)	172
LguI	GCTCTTC	1 cut(s)	106
LpnPI	CCDG	2 cut(s)	189, 219
LweI	GCATC	1 cut(s)	189
MboII	GAAGA	6 cut(s)	100, 103, 109, 123, 166, 244
MlsI	TGGCCA	1 cut(s)	188
MluCI	AATT	2 cut(s)	163, 217
MluNI	TGGCCA	1 cut(s)	188
MlyI	GAGTC	1 cut(s)	133
MnlI	CCTC	4 cut(s)	87, 127, 204, 221
Mox20I	TGGCCA	1 cut(s)	188
MscI	TGGCCA	1 cut(s)	188
MslI	CAYNNNNRTG	1 cut(s)	13
Msp20I	TGGCCA	1 cut(s)	188
NlaIII	CATG	1 cut(s)	172
NlaIV	GGNNCC	1 cut(s)	174
PciSI	GCTCTTC	1 cut(s)	106
PleI	GAGTC	1 cut(s)	132
PpsI	GAGTC	1 cut(s)	132
PspN4I	GGNNCC	1 cut(s)	174
PspPI	GGNCC	1 cut(s)	172
RsaI	GTAC	1 cut(s)	140
RsaNI	GTAC	1 cut(s)	139
RseI	CAYNNNNRTG	1 cut(s)	13
SapI	GCTCTTC	1 cut(s)	106
Sau96I	GGNCC	1 cut(s)	172
SchI	GAGTC	1 cut(s)	133
SetI	ASST	3 cut(s)	140, 213, 250
SfaNI	GCATC	1 cut(s)	189
SgeI	CNNG	8 cut(s)	64, 142, 163, 181, 188, 218, 238, 257
SmiMI	CAYNNNNRTG	1 cut(s)	13
Sse9I	AATT	2 cut(s)	163, 217
TaaI	ACNGT	1 cut(s)	27
TaqI	TCGA	1 cut(s)	51
TasI	AATT	2 cut(s)	163, 217
TspDTI	ATGAA	1 cut(s)	157
TspGWI	ACGGA	1 cut(s)	241
XapI	RAATTY	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.