Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8367419.1

Orthogroup ID

OG0002510

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 774

Gene Structure 774 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8367419.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 362 bp

taaagcatcacaagggtgaagatcttcttaaaggtcaagcactgaagaaccaaaaggctatctgggacaaaactcttgagttcagattcttgcttcagaaagcattctcaagttcaaatagattgccacaggagccagttaggtctctgttctgtggatcacatgaggatgtgaatgcagcatattccgatctagttacatcatcaaagaaaactttgaattctcttctggaactgcaagaggctttggttgaaaagaactcatctatcacacaagatgcaacaactggtatgtatagacgagaaactattatattacgttactttgttattcagattgatctttgcctggacttggcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AATF-Che1 TRAUB

Protein Analysis

119

Amino Acids

13.57

Weight (kDa)

7.97

Isoelectric Point (pI)

44.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61330 AT5G61330 AT5G61330
fragaria_vesca	FvH4_7g09370 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810
malus_domestica	MD02G1217000.v1.1 MD02G1263900.v1.1 MD02G1264000.v1.1 MD07G1073400.v1.1 MD07G1101900.v1.1 MD07G1102000.v1.1 MD07G1102300.v1.1 MD07G1103300.v1.1 MD08G1040900.v1.1
prunus_persica	Prupe.2G127200_v2.0.a1 Prupe.2G127200_v2.0.a1 Prupe.2G127200_v2.0.a1 Prupe.2G127200_v2.0.a1
pyrus_communis	pycom02g17860 pycom07g05740 pycom07g05770 pycom07g08340
rosa_chinensis	RchiOBHm_Chr1g0346971
rosa_laevigata	RLG00000028767
rosa_multiflora	Rmu_co8367419.1_g000001 Rmu_sc0001731.1_g000013 Rmu_sc0002705.1_g000017 Rmu_sc0008581.1_g000020
rosa_roxburghii	Rroxscaffold_4G00308010
rosa_samantha	Rh1AG202700 Rh1BG168600 Rh1BG168700 Rh1CG187400 Rh1DG199300 Rh1DG199400
rosa_wichuraiana	Rw1G016980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	165
AcsI	RAATTY	1 cut(s)	219
AcuI	CTGAAG	2 cut(s)	64, 79
AfiI	CCNNNNNNNGG	1 cut(s)	354
AgsI	TTSAA	3 cut(s)	116, 219, 253
AjnI	CCWGG	1 cut(s)	347
AleI	CACNNNNGTG	1 cut(s)	14
Alw26I	GTCTC	1 cut(s)	149
AlwI	GGATC	1 cut(s)	165
ApeKI	GCWGC	1 cut(s)	178
ApoI	RAATTY	1 cut(s)	219
Asp700I	GAANNNNTTC	2 cut(s)	23, 103
AsuHPI	GGTGA	1 cut(s)	28
BbvI	GCAGC	1 cut(s)	190
BciT130I	CCWGG	1 cut(s)	349
BcoDI	GTCTC	1 cut(s)	149
BfaI	CTAG	1 cut(s)	193
BglII	AGATCT	1 cut(s)	21
BisI	GCNGC	1 cut(s)	179
BlsI	GCNGC	1 cut(s)	180
Bme1390I	CCNGG	1 cut(s)	349
BmiI	GGNNCC	1 cut(s)	134
BmrFI	CCNGG	1 cut(s)	349
BmsI	GCATC	2 cut(s)	15, 267
BpuEI	CTTGAG	2 cut(s)	93, 97
BsaI	GGTCTC	1 cut(s)	149
Bsc4I	CCNNNNNNNGG	1 cut(s)	354
Bse1I	ACTGG	2 cut(s)	136, 291
BseBI	CCWGG	1 cut(s)	349
BseGI	GGATG	1 cut(s)	174
BseLI	CCNNNNNNNGG	1 cut(s)	354
BseNI	ACTGG	2 cut(s)	136, 291
BseXI	GCAGC	1 cut(s)	190
BslFI	GGGAC	1 cut(s)	79
BslI	CCNNNNNNNGG	1 cut(s)	354
BsmAI	GTCTC	1 cut(s)	149
BsmFI	GGGAC	1 cut(s)	79
BsmI	GAATGC	2 cut(s)	103, 180
Bso31I	GGTCTC	1 cut(s)	149
Bsp143I	GATC	4 cut(s)	21, 157, 189, 339
BspLI	GGNNCC	1 cut(s)	134
BspPI	GGATC	1 cut(s)	165
BspTNI	GGTCTC	1 cut(s)	149
BsrI	ACTGG	2 cut(s)	136, 291
BssMI	GATC	4 cut(s)	21, 157, 189, 339
Bst2UI	CCWGG	1 cut(s)	349
Bst6I	CTCTTC	1 cut(s)	230
BstF5I	GGATG	1 cut(s)	174
BstKTI	GATC	4 cut(s)	24, 160, 192, 342
BstMAI	GTCTC	1 cut(s)	149
BstMBI	GATC	4 cut(s)	21, 157, 189, 339
BstMWI	GCNNNNNNNGC	1 cut(s)	132
BstNI	CCWGG	1 cut(s)	349
BstSCI	CCNGG	1 cut(s)	347
BstV1I	GCAGC	1 cut(s)	190
BstX2I	RGATCY	1 cut(s)	21
BstYI	RGATCY	1 cut(s)	21
BtsCI	GGATG	1 cut(s)	174
BtsIMutI	CAGTG	1 cut(s)	40
CviAII	CATG	1 cut(s)	163
CviJI	RGCY	4 cut(s)	58, 135, 244, 358
CviKI_1	RGCY	4 cut(s)	58, 135, 244, 358
DpnI	GATC	4 cut(s)	23, 159, 191, 341
DpnII	GATC	4 cut(s)	21, 157, 189, 339
Eam1104I	CTCTTC	1 cut(s)	230
EarI	CTCTTC	1 cut(s)	230
Eco31I	GGTCTC	1 cut(s)	149
Eco57I	CTGAAG	2 cut(s)	64, 79
EcoRI	GAATTC	1 cut(s)	219
EcoRII	CCWGG	1 cut(s)	347
FaeI	CATG	1 cut(s)	166
FaiI	YATR	5 cut(s)	164, 183, 292, 296, 313
FalI	AAGNNNNNCTT	2 cut(s)	11, 43
FaqI	GGGAC	1 cut(s)	79
FatI	CATG	1 cut(s)	162
Fnu4HI	GCNGC	1 cut(s)	179
FokI	GGATG	1 cut(s)	181
Fsp4HI	GCNGC	1 cut(s)	179
FspBI	CTAG	1 cut(s)	193
GluI	GCNGC	1 cut(s)	179
Hin1II	CATG	1 cut(s)	166
HinfI	GANTC	1 cut(s)	86
HphI	GGTGA	1 cut(s)	28
Hpy188I	TCNGA	4 cut(s)	85, 98, 189, 335
Hpy188III	TCNNGA	2 cut(s)	76, 229
HpyCH4IV	ACGT	1 cut(s)	318
HpyCH4V	TGCA	3 cut(s)	178, 237, 280
HpyF10VI	GCNNNNNNNGC	1 cut(s)	132
HpySE526I	ACGT	1 cut(s)	318
Hsp92II	CATG	1 cut(s)	166
Kzo9I	GATC	4 cut(s)	21, 157, 189, 339
LmnI	GCTCC	1 cut(s)	132
LpnPI	CCDG	6 cut(s)	48, 115, 149, 214, 272, 334
Lsp1109I	GCAGC	1 cut(s)	190
LweI	GCATC	2 cut(s)	15, 267
MaeI	CTAG	1 cut(s)	193
MaeII	ACGT	1 cut(s)	318
MaeIII	GTNAC	2 cut(s)	195, 319
MalI	GATC	4 cut(s)	23, 159, 191, 341
MboI	GATC	4 cut(s)	21, 157, 189, 339
MboII	GAAGA	4 cut(s)	16, 31, 57, 217
MflI	RGATCY	1 cut(s)	21
MluCI	AATT	1 cut(s)	219
MnlI	CCTC	2 cut(s)	159, 234
MroXI	GAANNNNTTC	2 cut(s)	23, 103
MseI	TTAA	1 cut(s)	29
MslI	CAYNNNNRTG	2 cut(s)	14, 167
MspR9I	CCNGG	1 cut(s)	349
Mva1269I	GAATGC	2 cut(s)	103, 180
MvaI	CCWGG	1 cut(s)	349
MwoI	GCNNNNNNNGC	1 cut(s)	132
NdeII	GATC	4 cut(s)	21, 157, 189, 339
NlaIII	CATG	1 cut(s)	166
NlaIV	GGNNCC	1 cut(s)	134
OliI	CACNNNNGTG	1 cut(s)	14
PctI	GAATGC	2 cut(s)	103, 180
PdmI	GAANNNNTTC	2 cut(s)	23, 103
PfeI	GAWTC	1 cut(s)	86
PkrI	GCNGC	1 cut(s)	180
Psp6I	CCWGG	1 cut(s)	347
PspGI	CCWGG	1 cut(s)	347
PspN4I	GGNNCC	1 cut(s)	134
PsuI	RGATCY	1 cut(s)	21
RseI	CAYNNNNRTG	2 cut(s)	14, 167
SaqAI	TTAA	1 cut(s)	29
SatI	GCNGC	1 cut(s)	179
Sau3AI	GATC	4 cut(s)	21, 157, 189, 339
ScrFI	CCNGG	1 cut(s)	349
SetI	ASST	3 cut(s)	36, 145, 321
SfaNI	GCATC	2 cut(s)	15, 267
SmiMI	CAYNNNNRTG	2 cut(s)	14, 167
SmlI	CTYRAG	2 cut(s)	76, 108
SmoI	CTYRAG	2 cut(s)	76, 108
Sse9I	AATT	1 cut(s)	219
SspMI	CTAG	1 cut(s)	193
StyD4I	CCNGG	1 cut(s)	347
TaiI	ACGT	1 cut(s)	321
TasI	AATT	1 cut(s)	219
TfiI	GAWTC	1 cut(s)	86
Tru1I	TTAA	1 cut(s)	29
Tru9I	TTAA	1 cut(s)	29
TscAI	CASTG	1 cut(s)	47
TseI	GCWGC	1 cut(s)	178
TspRI	CASTG	1 cut(s)	47
XapI	RAATTY	1 cut(s)	219
XmnI	GAANNNNTTC	2 cut(s)	23, 103
XspI	CTAG	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.