Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002705.1

Orthogroup ID

OG0002510

Physical Location & Seq

Genomic Coordinates Reverse (-)

56313 .. 61462

Gene Structure 5150 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002705.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1374 bp

atggcagttggtaaggtgtacttgagctcaaaacccgtctttccccttcaaagcctcactcttctattgttttgcctgggcaatcacctgttttggtttctgaacaagacacaagggggctcagaagtaatgggaaagccttcaaagcggtcgagaaaggcgcctgaaagtgacagtgattttgagggcgatggtgatttggatagccatgagctaaatatggaggaagaggaggatgaatttgaggacgaggaggatgaaaaatctggtaatgaagaagaatccggtagcggagaagaagaggatgaagaagagggggaggaggaagaagatggggaagaagaagatggtaataaagatgctgagctggaagaccttgagaaacaatacatggatattcggcacgaagagcaagatattctcaagaatctaaagcatcacaagggtgaagatcttcttaaaggtcaagcactgaagaaccaaaaggctatctgggacaaaactcttgagttcagattcttgcttcagaaagcgttctcaagttcaaatagattaccacaggagccagttaggtctctgttctgtggatcacatgaggatgtgaatgcagcatattctgatctagttacatcatcaaagaaaactttgaattctcttctggaactgcaagaggctttcgttgaaaagaacccatctatcacacaagatgcaactactggtaactctggacgatctaagcattcagaaccatctaagaacattggtgttgatggtgatgaggattggtcaaggatttctaactggctttcaagaatagctactttcagaaacaaagaaattgacaaatggcaaacgagggcacaggtcaacacaggtgctgcttctattaagggccgactacaagcttttaatcagagtattagccaacaagttgctgcctatatgagagatccaagcagaatggttaaacagatgcagatgaggcgatcgtcagttggtgtatttgggactgttcttaatggagaggatactccaaagggagaggaatcccaatctgatgctgctgagcaagctgatggtgaccctgaacttttggatgactcggagttttaccagcaattactaaaagaattttttgagacaattgacccaacatcttctgagacggccttttattcactgaaaaagatgcagtctaagaagaggaagattgttgataggcgagcctcaaagagtcgtaagataaggtataatgttcatgagaagattgtaaatttcatggctccagagcctagggttcttcctcctatgttccctgacctcacctgtttgttcggaatgaagaactcaaaaccagcttctgtagtgcggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AATF-Che1 TRAUB

Protein Analysis

457

Amino Acids

51.84

Weight (kDa)

4.84

Isoelectric Point (pI)

62.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61330 AT5G61330 AT5G61330
fragaria_vesca	FvH4_7g09370 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810
malus_domestica	MD02G1217000.v1.1 MD02G1263900.v1.1 MD02G1264000.v1.1 MD07G1073400.v1.1 MD07G1101900.v1.1 MD07G1102000.v1.1 MD07G1102300.v1.1 MD07G1103300.v1.1 MD08G1040900.v1.1
prunus_persica	Prupe.2G127200_v2.0.a1 Prupe.2G127200_v2.0.a1 Prupe.2G127200_v2.0.a1 Prupe.2G127200_v2.0.a1
pyrus_communis	pycom02g17860 pycom07g05740 pycom07g05770 pycom07g08340
rosa_chinensis	RchiOBHm_Chr1g0346971
rosa_laevigata	RLG00000028767
rosa_multiflora	Rmu_co8367419.1_g000001 Rmu_sc0001731.1_g000013 Rmu_sc0002705.1_g000017 Rmu_sc0008581.1_g000020
rosa_roxburghii	Rroxscaffold_4G00308010
rosa_samantha	Rh1AG202700 Rh1BG168600 Rh1BG168700 Rh1CG187400 Rh1DG199300 Rh1DG199400
rosa_wichuraiana	Rw1G016980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	160
AciI	CCGC	3 cut(s)	148, 291, 1369
AclWI	GGATC	2 cut(s)	595, 944
AcsI	RAATTY	4 cut(s)	239, 649, 1130, 1273
AcuI	CTGAAG	2 cut(s)	494, 509
AcyI	GRCGYC	1 cut(s)	161
AfaI	GTAC	1 cut(s)	20
AgsI	TTSAA	6 cut(s)	50, 144, 546, 649, 683, 810
AjnI	CCWGG	1 cut(s)	75
AleI	CACNNNNGTG	1 cut(s)	444
AluBI	AGCT	7 cut(s)	27, 214, 367, 818, 905, 1073, 1358
AluI	AGCT	7 cut(s)	27, 214, 367, 818, 905, 1073, 1358
Alw21I	GWGCWC	1 cut(s)	29
Alw26I	GTCTC	3 cut(s)	579, 1133, 1157
AlwI	GGATC	2 cut(s)	595, 944
AlwNI	CAGNNNCTG	2 cut(s)	878, 1361
AoxI	GGCC	2 cut(s)	892, 1167
ApeKI	GCWGC	4 cut(s)	608, 878, 935, 1061
ApoI	RAATTY	4 cut(s)	239, 649, 1130, 1273
ArsI	GACNNNNNNTTYG	2 cut(s)	164, 196
Asp700I	GAANNNNTTC	3 cut(s)	139, 453, 533
AspA2I	CCTAGG	1 cut(s)	1292
AspLEI	GCGC	1 cut(s)	163
AspS9I	GGNCC	1 cut(s)	892
AsuHPI	GGTGA	6 cut(s)	77, 206, 458, 785, 1091, 1315
AvrII	CCTAGG	1 cut(s)	1292
BaeGI	GKGCMC	1 cut(s)	862
BanI	GGYRCC	1 cut(s)	160
BanII	GRGCYC	2 cut(s)	29, 122
BbsI	GAAGAC	1 cut(s)	378
Bbv12I	GWGCWC	1 cut(s)	29
BbvI	GCAGC	4 cut(s)	620, 865, 922, 1048
BccI	CCATC	7 cut(s)	185, 326, 341, 700, 757, 764, 1070
BceAI	ACGGC	1 cut(s)	1182
BciT130I	CCWGG	1 cut(s)	77
BciVI	GTATCC	1 cut(s)	1021
BcoDI	GTCTC	3 cut(s)	579, 1133, 1157
BfaI	CTAG	2 cut(s)	623, 1293
BfmI	CTRYAG	1 cut(s)	1362
BfoI	RGCGCY	1 cut(s)	164
BfuI	GTATCC	1 cut(s)	1021
BglII	AGATCT	1 cut(s)	451
BisI	GCNGC	4 cut(s)	609, 879, 936, 1062
BlnI	CCTAGG	1 cut(s)	1292
BlpI	GCTNAGC	2 cut(s)	363, 1065
BlsI	GCNGC	4 cut(s)	610, 880, 937, 1063
Bme1390I	CCNGG	1 cut(s)	77
BmgT120I	GGNCC	1 cut(s)	892
BmiI	GGNNCC	3 cut(s)	162, 564, 1284
BmrFI	CCNGG	1 cut(s)	77
BmsI	GCATC	6 cut(s)	349, 445, 697, 963, 1048, 1179
BpiI	GAAGAC	1 cut(s)	378
BpmI	CTGGAG	1 cut(s)	1269
Bpu1102I	GCTNAGC	2 cut(s)	363, 1065
BpuEI	CTTGAG	5 cut(s)	43, 398, 407, 523, 527
BsaHI	GRCGYC	1 cut(s)	161
BsaI	GGTCTC	1 cut(s)	579
BsaJI	CCNNGG	2 cut(s)	76, 1292
BsaWI	WCCGGW	1 cut(s)	284
Bse1I	ACTGG	3 cut(s)	566, 721, 806
BseBI	CCWGG	1 cut(s)	77
BseDI	CCNNGG	2 cut(s)	76, 1292
BseGI	GGATG	5 cut(s)	241, 262, 310, 604, 1102
BseMII	CTCAG	4 cut(s)	135, 354, 1056, 1152
BseNI	ACTGG	3 cut(s)	566, 721, 806
BseRI	GAGGAG	3 cut(s)	245, 266, 335
BseSI	GKGCMC	1 cut(s)	862
BseXI	GCAGC	4 cut(s)	620, 865, 922, 1048
Bsh1285I	CGRYCG	2 cut(s)	152, 989
BshFI	GGCC	2 cut(s)	894, 1169
BshNI	GGYRCC	1 cut(s)	160
BsiEI	CGRYCG	2 cut(s)	152, 989
BsiHKAI	GWGCWC	1 cut(s)	29
BsiSI	CCGG	1 cut(s)	285
BslFI	GGGAC	2 cut(s)	509, 1021
BsmAI	GTCTC	3 cut(s)	579, 1133, 1157
BsmBI	CGTCTC	1 cut(s)	1157
BsmFI	GGGAC	2 cut(s)	509, 1021
BsmI	GAATGC	2 cut(s)	610, 739
BsnI	GGCC	2 cut(s)	894, 1169
Bso31I	GGTCTC	1 cut(s)	579
Bsp1286I	GDGCHC	3 cut(s)	29, 122, 862
Bsp143I	GATC	6 cut(s)	451, 587, 619, 731, 949, 986
Bsp1720I	GCTNAGC	2 cut(s)	363, 1065
BspACI	CCGC	3 cut(s)	148, 291, 1369
BspANI	GGCC	2 cut(s)	894, 1169
BspCNI	CTCAG	4 cut(s)	134, 355, 1057, 1153
BspHI	TCATGA	1 cut(s)	1258
BspLI	GGNNCC	3 cut(s)	162, 564, 1284
BspPI	GGATC	2 cut(s)	595, 944
BspQI	GCTCTTC	1 cut(s)	402
BspT107I	GGYRCC	1 cut(s)	160
BspTNI	GGTCTC	1 cut(s)	579
BsrI	ACTGG	3 cut(s)	566, 721, 806
BssECI	CCNNGG	2 cut(s)	76, 1292
BssMI	GATC	6 cut(s)	451, 587, 619, 731, 949, 986
BssNI	GRCGYC	1 cut(s)	161
BssT1I	CCWWGG	1 cut(s)	1292
Bst2UI	CCWGG	1 cut(s)	77
Bst4CI	ACNGT	2 cut(s)	176, 1012
Bst6I	CTCTTC	7 cut(s)	66, 222, 294, 306, 402, 660, 1196
BstACI	GRCGYC	1 cut(s)	161
BstC8I	GCNNGC	2 cut(s)	1071, 1224
BstDEI	CTNAG	7 cut(s)	121, 363, 735, 753, 1065, 1161, 1197
BstEII	GGTNACC	1 cut(s)	1079
BstF5I	GGATG	5 cut(s)	241, 262, 310, 604, 1102
BstH2I	RGCGCY	1 cut(s)	164
BstHHI	GCGC	1 cut(s)	163
BstKTI	GATC	6 cut(s)	454, 590, 622, 734, 952, 989
BstMAI	GTCTC	3 cut(s)	579, 1133, 1157
BstMBI	GATC	6 cut(s)	451, 587, 619, 731, 949, 986
BstMCI	CGRYCG	2 cut(s)	152, 989
BstMWI	GCNNNNNNNGC	4 cut(s)	145, 409, 982, 1070
BstNI	CCWGG	1 cut(s)	77
BstPI	GGTNACC	1 cut(s)	1079
BstSCI	CCNGG	1 cut(s)	75
BstSFI	CTRYAG	1 cut(s)	1362
BstSLI	GKGCMC	1 cut(s)	862
BstV1I	GCAGC	4 cut(s)	620, 865, 922, 1048
BstV2I	GAAGAC	1 cut(s)	378
BstX2I	RGATCY	2 cut(s)	451, 949
BstYI	RGATCY	2 cut(s)	451, 949
BsuI	GTATCC	1 cut(s)	1021
BsuRI	GGCC	2 cut(s)	894, 1169
BtgZI	GCGATG	1 cut(s)	204
BtsCI	GGATG	5 cut(s)	241, 262, 310, 604, 1102
BtsIMutI	CAGTG	3 cut(s)	181, 470, 1178
Cac8I	GCNNGC	2 cut(s)	1071, 1224
CaiI	CAGNNNCTG	2 cut(s)	878, 1361
CciI	TCATGA	1 cut(s)	1258
CfoI	GCGC	1 cut(s)	163
Cfr13I	GGNCC	1 cut(s)	892
Csp6I	GTAC	1 cut(s)	19
CviAII	CATG	5 cut(s)	209, 391, 593, 1259, 1279
CviQI	GTAC	1 cut(s)	19
DdeI	CTNAG	7 cut(s)	121, 363, 735, 753, 1065, 1161, 1197
DinI	GGCGCC	1 cut(s)	162
DpnI	GATC	6 cut(s)	453, 589, 621, 733, 951, 988
DpnII	GATC	6 cut(s)	451, 587, 619, 731, 949, 986
Eam1104I	CTCTTC	7 cut(s)	66, 222, 294, 306, 402, 660, 1196
EarI	CTCTTC	7 cut(s)	66, 222, 294, 306, 402, 660, 1196
Ecl136II	GAGCTC	1 cut(s)	27
Eco130I	CCWWGG	1 cut(s)	1292
Eco24I	GRGCYC	2 cut(s)	29, 122
Eco31I	GGTCTC	1 cut(s)	579
Eco53kI	GAGCTC	1 cut(s)	27
Eco57I	CTGAAG	2 cut(s)	494, 509
Eco91I	GGTNACC	1 cut(s)	1079
EcoICRI	GAGCTC	1 cut(s)	27
EcoO65I	GGTNACC	1 cut(s)	1079
EcoRI	GAATTC	1 cut(s)	649
EcoRII	CCWGG	1 cut(s)	75
EcoT14I	CCWWGG	1 cut(s)	1292
EcoT38I	GRGCYC	2 cut(s)	29, 122
EgeI	GGCGCC	1 cut(s)	162
EheI	GGCGCC	1 cut(s)	162
ErhI	CCWWGG	1 cut(s)	1292
Esp3I	CGTCTC	1 cut(s)	1157
FaeI	CATG	5 cut(s)	212, 394, 596, 1262, 1282
FalI	AAGNNNNNCTT	3 cut(s)	37, 441, 473
FaqI	GGGAC	2 cut(s)	509, 1021
FatI	CATG	5 cut(s)	208, 390, 592, 1258, 1278
Fnu4HI	GCNGC	4 cut(s)	609, 879, 936, 1062
FokI	GGATG	5 cut(s)	248, 269, 317, 611, 1109
FriOI	GRGCYC	2 cut(s)	29, 122
Fsp4HI	GCNGC	4 cut(s)	609, 879, 936, 1062
FspBI	CTAG	2 cut(s)	623, 1293
GlaI	GCGC	1 cut(s)	162
GluI	GCNGC	4 cut(s)	609, 879, 936, 1062
GsuI	CTGGAG	1 cut(s)	1269
HaeII	RGCGCY	1 cut(s)	164
HaeIII	GGCC	2 cut(s)	894, 1169
HapII	CCGG	1 cut(s)	285
HhaI	GCGC	1 cut(s)	163
Hin1I	GRCGYC	1 cut(s)	161
Hin1II	CATG	5 cut(s)	212, 394, 596, 1262, 1282
Hin6I	GCGC	1 cut(s)	161
HinP1I	GCGC	1 cut(s)	161
HincII	GTYRAC	1 cut(s)	868
HindII	GTYRAC	1 cut(s)	868
HindIII	AAGCTT	1 cut(s)	903
HinfI	GANTC	6 cut(s)	281, 427, 516, 1046, 1100, 1234
HpaII	CCGG	1 cut(s)	285
HphI	GGTGA	6 cut(s)	77, 206, 458, 785, 1091, 1315
Hpy166II	GTNNAC	2 cut(s)	19, 868
Hpy188III	TCNNGA	8 cut(s)	153, 424, 506, 659, 726, 810, 1259, 1286
Hpy8I	GTNNAC	2 cut(s)	19, 868
HpyAV	CCTTC	2 cut(s)	56, 150
HpyCH4III	ACNGT	2 cut(s)	176, 1012
HpyCH4V	TGCA	5 cut(s)	608, 667, 710, 976, 1192
HpyF10VI	GCNNNNNNNGC	4 cut(s)	145, 409, 982, 1070
HpyF3I	CTNAG	7 cut(s)	121, 363, 735, 753, 1065, 1161, 1197
Hsp92I	GRCGYC	1 cut(s)	161
Hsp92II	CATG	5 cut(s)	212, 394, 596, 1262, 1282
HspAI	GCGC	1 cut(s)	161
KasI	GGCGCC	1 cut(s)	160
Kzo9I	GATC	6 cut(s)	451, 587, 619, 731, 949, 986
LguI	GCTCTTC	1 cut(s)	402
LmnI	GCTCC	2 cut(s)	562, 1288
Lsp1109I	GCAGC	4 cut(s)	620, 865, 922, 1048
LweI	GCATC	6 cut(s)	349, 445, 697, 963, 1048, 1179
MaeI	CTAG	2 cut(s)	623, 1293
MaeIII	GTNAC	4 cut(s)	170, 625, 719, 1079
MalI	GATC	6 cut(s)	453, 589, 621, 733, 951, 988
MboI	GATC	6 cut(s)	451, 587, 619, 731, 949, 986
MfeI	CAATTG	1 cut(s)	1143
MflI	RGATCY	2 cut(s)	451, 949
MhlI	GDGCHC	3 cut(s)	29, 122, 862
MluCI	AATT	7 cut(s)	239, 649, 837, 1118, 1130, 1143, 1273
Mly113I	GGCGCC	1 cut(s)	161
MlyI	GAGTC	2 cut(s)	1094, 1243
MroXI	GAANNNNTTC	3 cut(s)	139, 453, 533
MseI	TTAA	5 cut(s)	459, 888, 909, 966, 1017
MslI	CAYNNNNRTG	2 cut(s)	444, 597
MspI	CCGG	1 cut(s)	285
MspR9I	CCNGG	1 cut(s)	77
MunI	CAATTG	1 cut(s)	1143
Mva1269I	GAATGC	2 cut(s)	610, 739
MvaI	CCWGG	1 cut(s)	77
MwoI	GCNNNNNNNGC	4 cut(s)	145, 409, 982, 1070
NarI	GGCGCC	1 cut(s)	161
NdeII	GATC	6 cut(s)	451, 587, 619, 731, 949, 986
NlaIII	CATG	5 cut(s)	212, 394, 596, 1262, 1282
NlaIV	GGNNCC	3 cut(s)	162, 564, 1284
NmuCI	GTSAC	2 cut(s)	170, 1079
OliI	CACNNNNGTG	1 cut(s)	444
PagI	TCATGA	1 cut(s)	1258
PciSI	GCTCTTC	1 cut(s)	402
PctI	GAATGC	2 cut(s)	610, 739
PdmI	GAANNNNTTC	3 cut(s)	139, 453, 533
PfeI	GAWTC	4 cut(s)	281, 427, 516, 1046
PkrI	GCNGC	4 cut(s)	610, 880, 937, 1063
Ple19I	CGATCG	1 cut(s)	989
PleI	GAGTC	2 cut(s)	1094, 1242
PluTI	GGCGCC	1 cut(s)	164
PpsI	GAGTC	2 cut(s)	1094, 1242
Psp124BI	GAGCTC	1 cut(s)	29
Psp6I	CCWGG	1 cut(s)	75
PspEI	GGTNACC	1 cut(s)	1079
PspGI	CCWGG	1 cut(s)	75
PspN4I	GGNNCC	3 cut(s)	162, 564, 1284
PspPI	GGNCC	1 cut(s)	892
PstNI	CAGNNNCTG	2 cut(s)	878, 1361
PsuI	RGATCY	2 cut(s)	451, 949
PvuI	CGATCG	1 cut(s)	989
RsaI	GTAC	1 cut(s)	20
RsaNI	GTAC	1 cut(s)	19
RseI	CAYNNNNRTG	2 cut(s)	444, 597
SacI	GAGCTC	1 cut(s)	29
SapI	GCTCTTC	1 cut(s)	402
SaqAI	TTAA	5 cut(s)	459, 888, 909, 966, 1017
SatI	GCNGC	4 cut(s)	609, 879, 936, 1062
Sau3AI	GATC	6 cut(s)	451, 587, 619, 731, 949, 986
Sau96I	GGNCC	1 cut(s)	892
SchI	GAGTC	2 cut(s)	1094, 1243
ScrFI	CCNGG	1 cut(s)	77
SduI	GDGCHC	3 cut(s)	29, 122, 862
SfaNI	GCATC	6 cut(s)	349, 445, 697, 963, 1048, 1179
SfcI	CTRYAG	1 cut(s)	1362
SfoI	GGCGCC	1 cut(s)	162
SmiMI	CAYNNNNRTG	2 cut(s)	444, 597
SmlI	CTYRAG	5 cut(s)	22, 377, 422, 506, 538
SmoI	CTYRAG	5 cut(s)	22, 377, 422, 506, 538
Sse9I	AATT	7 cut(s)	239, 649, 837, 1118, 1130, 1143, 1273
SsiI	CCGC	3 cut(s)	148, 291, 1369
SspDI	GGCGCC	1 cut(s)	160
SspMI	CTAG	2 cut(s)	623, 1293
SstI	GAGCTC	1 cut(s)	29
StyD4I	CCNGG	1 cut(s)	75
StyI	CCWWGG	1 cut(s)	1292
TaaI	ACNGT	2 cut(s)	176, 1012
TaqI	TCGA	1 cut(s)	152
TasI	AATT	7 cut(s)	239, 649, 837, 1118, 1130, 1143, 1273
TatI	WGTACW	1 cut(s)	18
TfiI	GAWTC	4 cut(s)	281, 427, 516, 1046
Tru1I	TTAA	5 cut(s)	459, 888, 909, 966, 1017
Tru9I	TTAA	5 cut(s)	459, 888, 909, 966, 1017
TscAI	CASTG	3 cut(s)	181, 477, 1185
TseFI	GTSAC	2 cut(s)	170, 1079
TseI	GCWGC	4 cut(s)	608, 878, 935, 1061
Tsp45I	GTSAC	2 cut(s)	170, 1079
TspDTI	ATGAA	7 cut(s)	252, 273, 288, 321, 1247, 1267, 1355
TspRI	CASTG	3 cut(s)	181, 477, 1185
XapI	RAATTY	4 cut(s)	239, 649, 1130, 1273
XmaJI	CCTAGG	1 cut(s)	1292
XmnI	GAANNNNTTC	3 cut(s)	139, 453, 533
XspI	CTAG	2 cut(s)	623, 1293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.