Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0002510

Physical Location & Seq

Genomic Coordinates Forward (+)

16109961 .. 16114176

Gene Structure 4216 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g17860.11

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGAAGAACTCGAGAAAGAATACATGAATCTTCGTTATCAGGAGCAAGATATTTTAAAGAATCTAAAGCGTCATAAGGACGAAGATCTTCTTAAAGGTCAAGCAGTGAAGAACCAAAAGGCTCTCTGGGACAAAGCTCTTGAGTTCAGATTCTTGCTTCAGAAAGCATTCGCAAATTCAAATAGATTACCACAGGAGCCAGTTAGGTCTTTATTTTATGATTCACATCAGGGTGTCAGTACAGCATATTCTGATCTAGTTGACTCATCAAAGCAAACTTTGGATTCACTAGCGGAACTACAAGAGGCTTTACTTGAGAAGAACCCGTCCATCGTTCAAGCAACAGATAGTAAATCTGGACAATCTAAGAAGTCAGAGTCATCTAAGAACATTGACGGTGATGGTGATGAGGATTGGTCATGGATTTCTCAGTTGCTGTCGAGAATAGCTACTTTCAGAGACAAATCCATCAACAAATGGCAGAGGAAGACAGAGGTGACCACAGGTGCTGCTGCTATTAAAAGCAAACTGCATGCTTTTAATCAGAATATTAGTGAACAAGTTGCTTCTTATATGAGAGATCCAAGCAGAATGGTTAGGCAGATGCAGATGAGGAAATCAGCAGTTTCTGTATTTGGCGCTGTTCCTGAGGAGAAACATACTGCAAAGGGGGAGGAGACACAATCTGAAGCTGGTGCACAAGCTGACGGTGACCCTGAACTTTTGGATGACTCTGAGTTTTACCAGCAGTTACTGAAAGAATTTTTTGAGACAATTGACCCAGCATCTTCTGAGACAGCCTTTTATTCTTTGAAAAAGTTGCATACAAAGAAGAGGAAGATTGTTGACAGAAGAGCCTCTAAGAGTCGCAAGATAAGGTACAATGTTCACGAGAAGATAGTAAATTTCATGGCCCCGGAGACCATGGCCGTTCCTCCGATGCTTCCTGACCTCAATAATTTGTTTGGGTTGAAGAAGCAAAAACCAGCTTCCGTAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AATF-Che1 TRAUB

Protein Analysis

334

Amino Acids

38.01

Weight (kDa)

8.69

Isoelectric Point (pI)

52.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61330 AT5G61330 AT5G61330
fragaria_vesca	FvH4_7g09370 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810
malus_domestica	MD02G1217000.v1.1 MD02G1263900.v1.1 MD02G1264000.v1.1 MD07G1073400.v1.1 MD07G1101900.v1.1 MD07G1102000.v1.1 MD07G1102300.v1.1 MD07G1103300.v1.1 MD08G1040900.v1.1
prunus_persica	Prupe.2G127200_v2.0.a1 Prupe.2G127200_v2.0.a1 Prupe.2G127200_v2.0.a1 Prupe.2G127200_v2.0.a1
pyrus_communis	pycom02g17860 pycom07g05740 pycom07g05770 pycom07g08340
rosa_chinensis	RchiOBHm_Chr1g0346971
rosa_laevigata	RLG00000028767
rosa_multiflora	Rmu_co8367419.1_g000001 Rmu_sc0001731.1_g000013 Rmu_sc0002705.1_g000017 Rmu_sc0008581.1_g000020
rosa_roxburghii	Rroxscaffold_4G00308010
rosa_samantha	Rh1AG202700 Rh1BG168600 Rh1BG168700 Rh1CG187400 Rh1DG199300 Rh1DG199400
rosa_wichuraiana	Rw1G016980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	293
AclWI	GGATC	1 cut(s)	575
AcoI	YGGCCR	1 cut(s)	927
AcsI	RAATTY	3 cut(s)	175, 761, 904
AcuI	CTGAAG	2 cut(s)	143, 708
AfaI	GTAC	2 cut(s)	241, 881
AgsI	TTSAA	4 cut(s)	180, 338, 814, 973
AluBI	AGCT	5 cut(s)	137, 449, 692, 704, 989
AluI	AGCT	5 cut(s)	137, 449, 692, 704, 989
Alw21I	GWGCWC	1 cut(s)	700
Alw26I	GTCTC	5 cut(s)	453, 671, 764, 788, 914
Alw44I	GTGCAC	1 cut(s)	696
AlwI	GGATC	1 cut(s)	575
AlwNI	CAGNNNCTG	4 cut(s)	436, 509, 629, 754
Ama87I	CYCGRG	1 cut(s)	11
AoxI	GGCC	2 cut(s)	912, 927
ApaLI	GTGCAC	1 cut(s)	696
ApeKI	GCWGC	2 cut(s)	509, 512
ApoI	RAATTY	3 cut(s)	175, 761, 904
Asp700I	GAANNNNTTC	2 cut(s)	87, 167
AspLEI	GCGC	1 cut(s)	641
AspS9I	GGNCC	1 cut(s)	913
AsuC2I	CCSGG	1 cut(s)	917
AsuHPI	GGTGA	4 cut(s)	410, 416, 508, 722
AvaI	CYCGRG	1 cut(s)	11
AxyI	CCTNAGG	1 cut(s)	648
BaeGI	GKGCMC	1 cut(s)	700
BauI	CACGAG	1 cut(s)	890
BbsI	GAAGAC	1 cut(s)	494
Bbv12I	GWGCWC	1 cut(s)	700
BbvI	GCAGC	2 cut(s)	496, 499
BccI	CCATC	3 cut(s)	338, 395, 476
BceAI	ACGGC	1 cut(s)	914
BcnI	CCSGG	1 cut(s)	917
BcoDI	GTCTC	5 cut(s)	453, 671, 764, 788, 914
BfaI	CTAG	2 cut(s)	257, 290
BfoI	RGCGCY	1 cut(s)	642
BglII	AGATCT	1 cut(s)	85
BisI	GCNGC	2 cut(s)	510, 513
BlsI	GCNGC	2 cut(s)	511, 514
Bme1390I	CCNGG	1 cut(s)	917
BmeT110I	CYCGRG	1 cut(s)	11
BmgT120I	GGNCC	1 cut(s)	913
BmiI	GGNNCC	2 cut(s)	198, 915
BmrFI	CCNGG	1 cut(s)	917
BmsI	GCATC	3 cut(s)	594, 794, 930
BpiI	GAAGAC	1 cut(s)	494
BpuEI	CTTGAG	2 cut(s)	161, 335
BpuMI	CCSGG	1 cut(s)	917
BsaBI	GATNNNNATC	1 cut(s)	225
BsaI	GGTCTC	1 cut(s)	914
BsaJI	CCNNGG	2 cut(s)	915, 924
Bse1I	ACTGG	1 cut(s)	200
Bse21I	CCTNAGG	1 cut(s)	648
Bse8I	GATNNNNATC	1 cut(s)	225
BseDI	CCNNGG	2 cut(s)	915, 924
BseGI	GGATG	1 cut(s)	733
BseJI	GATNNNNATC	1 cut(s)	225
BseMII	CTCAG	4 cut(s)	443, 639, 726, 783
BseNI	ACTGG	1 cut(s)	200
BseRI	GAGGAG	2 cut(s)	665, 689
BseSI	GKGCMC	1 cut(s)	700
BseXI	GCAGC	2 cut(s)	496, 499
BseYI	CCCAGC	1 cut(s)	781
BshFI	GGCC	2 cut(s)	914, 929
BsiHKAI	GWGCWC	1 cut(s)	700
BsiHKCI	CYCGRG	1 cut(s)	11
BsiSI	CCGG	1 cut(s)	917
BslFI	GGGAC	1 cut(s)	143
BsmAI	GTCTC	5 cut(s)	453, 671, 764, 788, 914
BsmFI	GGGAC	1 cut(s)	143
BsmI	GAATGC	1 cut(s)	167
BsnI	GGCC	2 cut(s)	914, 929
Bso31I	GGTCTC	1 cut(s)	914
BsoBI	CYCGRG	1 cut(s)	11
Bsp1286I	GDGCHC	1 cut(s)	700
Bsp143I	GATC	3 cut(s)	85, 253, 580
Bsp19I	CCATGG	1 cut(s)	924
BspACI	CCGC	1 cut(s)	293
BspANI	GGCC	2 cut(s)	914, 929
BspCNI	CTCAG	4 cut(s)	442, 640, 727, 784
BspLI	GGNNCC	2 cut(s)	198, 915
BspPI	GGATC	1 cut(s)	575
BspQI	GCTCTTC	1 cut(s)	847
BspTNI	GGTCTC	1 cut(s)	914
BsrI	ACTGG	1 cut(s)	200
BssECI	CCNNGG	2 cut(s)	915, 924
BssMI	GATC	3 cut(s)	85, 253, 580
BssSI	CACGAG	1 cut(s)	890
BssT1I	CCWWGG	1 cut(s)	924
Bst2BI	CACGAG	1 cut(s)	890
Bst4CI	ACNGT	2 cut(s)	398, 710
Bst6I	CTCTTC	2 cut(s)	827, 847
BstC8I	GCNNGC	1 cut(s)	534
BstDEI	CTNAG	7 cut(s)	366, 384, 429, 648, 735, 792, 861
BstDSI	CCRYGG	1 cut(s)	924
BstEII	GGTNACC	2 cut(s)	496, 710
BstF5I	GGATG	1 cut(s)	733
BstH2I	RGCGCY	1 cut(s)	642
BstHHI	GCGC	1 cut(s)	641
BstKTI	GATC	3 cut(s)	88, 256, 583
BstMAI	GTCTC	5 cut(s)	453, 671, 764, 788, 914
BstMBI	GATC	3 cut(s)	85, 253, 580
BstNSI	RCATGY	1 cut(s)	536
BstPI	GGTNACC	2 cut(s)	496, 710
BstSCI	CCNGG	1 cut(s)	915
BstSLI	GKGCMC	1 cut(s)	700
BstV1I	GCAGC	2 cut(s)	496, 499
BstV2I	GAAGAC	1 cut(s)	494
BstX2I	RGATCY	2 cut(s)	85, 580
BstYI	RGATCY	2 cut(s)	85, 580
Bsu36I	CCTNAGG	1 cut(s)	648
BsuRI	GGCC	2 cut(s)	914, 929
BtgI	CCRYGG	1 cut(s)	924
BtsCI	GGATG	1 cut(s)	733
BtsI	GCAGTG	1 cut(s)	111
BtsIMutI	CAGTG	1 cut(s)	111
Cac8I	GCNNGC	1 cut(s)	534
CaiI	CAGNNNCTG	4 cut(s)	436, 509, 629, 754
CfoI	GCGC	1 cut(s)	641
Cfr13I	GGNCC	1 cut(s)	913
CseI	GACGC	1 cut(s)	59
Csp6I	GTAC	2 cut(s)	240, 880
CviAII	CATG	5 cut(s)	25, 420, 533, 910, 925
CviQI	GTAC	2 cut(s)	240, 880
DdeI	CTNAG	7 cut(s)	366, 384, 429, 648, 735, 792, 861
DpnI	GATC	3 cut(s)	87, 255, 582
DpnII	GATC	3 cut(s)	85, 253, 580
DraI	TTTAAA	1 cut(s)	57
EaeI	YGGCCR	1 cut(s)	927
Eam1104I	CTCTTC	2 cut(s)	827, 847
EarI	CTCTTC	2 cut(s)	827, 847
Eco130I	CCWWGG	1 cut(s)	924
Eco31I	GGTCTC	1 cut(s)	914
Eco57I	CTGAAG	2 cut(s)	143, 708
Eco81I	CCTNAGG	1 cut(s)	648
Eco88I	CYCGRG	1 cut(s)	11
Eco91I	GGTNACC	2 cut(s)	496, 710
EcoO65I	GGTNACC	2 cut(s)	496, 710
EcoT14I	CCWWGG	1 cut(s)	924
ErhI	CCWWGG	1 cut(s)	924
FaeI	CATG	5 cut(s)	28, 423, 536, 913, 928
FalI	AAGNNNNNCTT	2 cut(s)	75, 107
FaqI	GGGAC	1 cut(s)	143
FatI	CATG	5 cut(s)	24, 419, 532, 909, 924
Fnu4HI	GCNGC	2 cut(s)	510, 513
FokI	GGATG	1 cut(s)	740
Fsp4HI	GCNGC	2 cut(s)	510, 513
FspBI	CTAG	2 cut(s)	257, 290
GlaI	GCGC	1 cut(s)	640
GluI	GCNGC	2 cut(s)	510, 513
GsaI	CCCAGC	1 cut(s)	785
HaeII	RGCGCY	1 cut(s)	642
HaeIII	GGCC	2 cut(s)	914, 929
HapII	CCGG	1 cut(s)	917
HgaI	GACGC	1 cut(s)	59
HhaI	GCGC	1 cut(s)	641
Hin1II	CATG	5 cut(s)	28, 423, 536, 913, 928
Hin6I	GCGC	1 cut(s)	639
HinP1I	GCGC	1 cut(s)	639
HincII	GTYRAC	2 cut(s)	262, 847
HindII	GTYRAC	2 cut(s)	262, 847
HinfI	GANTC	9 cut(s)	28, 61, 150, 221, 263, 284, 377, 731, 865
HpaII	CCGG	1 cut(s)	917
HphI	GGTGA	4 cut(s)	410, 416, 508, 722
Hpy166II	GTNNAC	5 cut(s)	262, 557, 698, 847, 889
Hpy188III	TCNNGA	8 cut(s)	13, 41, 140, 357, 441, 647, 890, 947
Hpy8I	GTNNAC	5 cut(s)	262, 557, 698, 847, 889
HpyCH4III	ACNGT	2 cut(s)	398, 710
HpyCH4V	TGCA	5 cut(s)	532, 607, 665, 698, 823
HpyF3I	CTNAG	7 cut(s)	366, 384, 429, 648, 735, 792, 861
Hsp92II	CATG	5 cut(s)	28, 423, 536, 913, 928
HspAI	GCGC	1 cut(s)	639
Kzo9I	GATC	3 cut(s)	85, 253, 580
LguI	GCTCTTC	1 cut(s)	847
LmnI	GCTCC	2 cut(s)	43, 196
Lsp1109I	GCAGC	2 cut(s)	496, 499
LweI	GCATC	3 cut(s)	594, 794, 930
MaeI	CTAG	2 cut(s)	257, 290
MaeIII	GTNAC	3 cut(s)	496, 710, 750
MalI	GATC	3 cut(s)	87, 255, 582
MboI	GATC	3 cut(s)	85, 253, 580
MfeI	CAATTG	1 cut(s)	774
MflI	RGATCY	2 cut(s)	85, 580
MhlI	GDGCHC	1 cut(s)	700
MluCI	AATT	5 cut(s)	175, 761, 774, 904, 958
MlyI	GAGTC	4 cut(s)	257, 386, 725, 874
MroXI	GAANNNNTTC	2 cut(s)	87, 167
MseI	TTAA	4 cut(s)	56, 93, 519, 540
MslI	CAYNNNNRTG	1 cut(s)	231
MspI	CCGG	1 cut(s)	917
MspR9I	CCNGG	1 cut(s)	917
MunI	CAATTG	1 cut(s)	774
Mva1269I	GAATGC	1 cut(s)	167
NciI	CCSGG	1 cut(s)	917
NcoI	CCATGG	1 cut(s)	924
NdeII	GATC	3 cut(s)	85, 253, 580
NlaIII	CATG	5 cut(s)	28, 423, 536, 913, 928
NlaIV	GGNNCC	2 cut(s)	198, 915
NmuCI	GTSAC	2 cut(s)	496, 710
NspI	RCATGY	1 cut(s)	536
PaeI	GCATGC	1 cut(s)	536
PaeR7I	CTCGAG	1 cut(s)	11
PciSI	GCTCTTC	1 cut(s)	847
PctI	GAATGC	1 cut(s)	167
PdmI	GAANNNNTTC	2 cut(s)	87, 167
PfeI	GAWTC	5 cut(s)	28, 61, 150, 221, 284
PkrI	GCNGC	2 cut(s)	511, 514
PleI	GAGTC	4 cut(s)	257, 385, 725, 873
PpsI	GAGTC	4 cut(s)	257, 385, 725, 873
PspEI	GGTNACC	2 cut(s)	496, 710
PspFI	CCCAGC	1 cut(s)	781
PspN4I	GGNNCC	2 cut(s)	198, 915
PspPI	GGNCC	1 cut(s)	913
PstNI	CAGNNNCTG	4 cut(s)	436, 509, 629, 754
PsuI	RGATCY	2 cut(s)	85, 580
RsaI	GTAC	2 cut(s)	241, 881
RsaNI	GTAC	2 cut(s)	240, 880
RseI	CAYNNNNRTG	1 cut(s)	231
SapI	GCTCTTC	1 cut(s)	847
SaqAI	TTAA	4 cut(s)	56, 93, 519, 540
SatI	GCNGC	2 cut(s)	510, 513
Sau3AI	GATC	3 cut(s)	85, 253, 580
Sau96I	GGNCC	1 cut(s)	913
SchI	GAGTC	4 cut(s)	257, 386, 725, 874
ScrFI	CCNGG	1 cut(s)	917
SduI	GDGCHC	1 cut(s)	700
SfaNI	GCATC	3 cut(s)	594, 794, 930
Sfr274I	CTCGAG	1 cut(s)	11
SlaI	CTCGAG	1 cut(s)	11
SmiMI	CAYNNNNRTG	1 cut(s)	231
SmlI	CTYRAG	3 cut(s)	11, 140, 314
SmoI	CTYRAG	3 cut(s)	11, 140, 314
SphI	GCATGC	1 cut(s)	536
Sse9I	AATT	5 cut(s)	175, 761, 774, 904, 958
SsiI	CCGC	1 cut(s)	293
SspI	AATATT	1 cut(s)	550
SspMI	CTAG	2 cut(s)	257, 290
StyD4I	CCNGG	1 cut(s)	915
StyI	CCWWGG	1 cut(s)	924
TaaI	ACNGT	2 cut(s)	398, 710
TaqI	TCGA	2 cut(s)	12, 440
TasI	AATT	5 cut(s)	175, 761, 774, 904, 958
TatI	WGTACW	1 cut(s)	239
TfiI	GAWTC	5 cut(s)	28, 61, 150, 221, 284
Tru1I	TTAA	4 cut(s)	56, 93, 519, 540
Tru9I	TTAA	4 cut(s)	56, 93, 519, 540
TscAI	CASTG	1 cut(s)	111
TseFI	GTSAC	2 cut(s)	496, 710
TseI	GCWGC	2 cut(s)	509, 512
Tsp45I	GTSAC	2 cut(s)	496, 710
TspDTI	ATGAA	2 cut(s)	41, 898
TspGWI	ACGGA	1 cut(s)	982
TspRI	CASTG	1 cut(s)	111
VneI	GTGCAC	1 cut(s)	696
XapI	RAATTY	3 cut(s)	175, 761, 904
XceI	RCATGY	1 cut(s)	536
XhoI	CTCGAG	1 cut(s)	11
XmnI	GAANNNNTTC	2 cut(s)	87, 167
XspI	CTAG	2 cut(s)	257, 290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.