Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0002510

Physical Location & Seq

Genomic Coordinates Reverse (-)

40915440 .. 40921236

Gene Structure 5797 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG187400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGGAAAGCCTTCGAGAAAGGCGCCTGAAAGTGACAGTGATTTTGAGGACGATGGTGATTTGGATAGCCATGAGCTAAATATGGAGGAAGAGGAGGATGAATTTGAGGACGAGGAGGATGAAAAATCTGGTAATGAAGAAGAATCCGGTAGCGGAGAAGAAGAGGATGAAGAAGAGGGGGAAGAAGAAAATGGTAATAAAGATGCTGAGATGGAAGAACTTGAGAAACAATACATGGATATTCGTCACGAAGAGCAAGATATTCTCAAGAATCTAAAGCATCACAAGGGTGAAGATCTTCTCAAAGGTCAAGCACTGAAGAACCAAAAGGCTATCTGGGACAAAACTCTTGAGTTCAGATTCTTGCTTCAGAAAGCGTTCTCAAGTTCAAATAGATTACCACAGGAGCCAGTTAGGTCTCTGTTCTGTGGATCACATGAGGATGTGAATGCAGCATATTCCGATCTAGTTACATCATCAAAGAAAACTTTGAATTCTCTTCTGGAACTGCAAGAGGCTTTGGTTGAAAAGAGCCCATCTATCACACAAGATGCAACAACTGGTAACTCTGGACGATCTAAGCATTCAGAACCATCTAAGAACATTGGTGTTGATGGTGATGAGGATTGGTCAAGGATTTCTAACTGGCTTTCAAGAATAGCTACTTTCAGAAACAAAGAAATTGACAAATGGCAAACGAGGGCACAGGTCAACACAGGTGCTGCTTCTATTAAGGGCCGACTACAAGCTTTTAATCAGAGTATTAGCCAACAAGTTGCTGCCTATATGAGAGATCCAAGCAGAATGGTTAAACAGATGCAGATGAGGCGATCGGCAGTTGCTGTATTTGGGACTGTAAGATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AATF-Che1 TRAUB

Protein Analysis

288

Amino Acids

32.7

Weight (kDa)

4.68

Isoelectric Point (pI)

65.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AATF-Che1	PF13339	99 - 234	4.4e-30	Apoptosis antagonizing transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61330 AT5G61330 AT5G61330
fragaria_vesca	FvH4_7g09370 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810
malus_domestica	MD02G1217000.v1.1 MD02G1263900.v1.1 MD02G1264000.v1.1 MD07G1073400.v1.1 MD07G1101900.v1.1 MD07G1102000.v1.1 MD07G1102300.v1.1 MD07G1103300.v1.1 MD08G1040900.v1.1
prunus_persica	Prupe.2G127200_v2.0.a1 Prupe.2G127200_v2.0.a1 Prupe.2G127200_v2.0.a1 Prupe.2G127200_v2.0.a1
pyrus_communis	pycom02g17860 pycom07g05740 pycom07g05770 pycom07g08340
rosa_chinensis	RchiOBHm_Chr1g0346971
rosa_laevigata	RLG00000028767
rosa_multiflora	Rmu_co8367419.1_g000001 Rmu_sc0001731.1_g000013 Rmu_sc0002705.1_g000017 Rmu_sc0008581.1_g000020
rosa_roxburghii	Rroxscaffold_4G00308010
rosa_samantha	Rh1AG202700 Rh1BG168600 Rh1BG168700 Rh1CG187400 Rh1DG199300 Rh1DG199400
rosa_wichuraiana	Rw1G016980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	22
AciI	CCGC	1 cut(s)	153
AclWI	GGATC	2 cut(s)	439, 788
AcsI	RAATTY	2 cut(s)	101, 493
AcuI	CTGAAG	2 cut(s)	338, 353
AcyI	GRCGYC	1 cut(s)	23
AgsI	TTSAA	4 cut(s)	390, 493, 527, 654
AleI	CACNNNNGTG	1 cut(s)	288
AluBI	AGCT	3 cut(s)	76, 662, 749
AluI	AGCT	3 cut(s)	76, 662, 749
Alw26I	GTCTC	1 cut(s)	423
AlwI	GGATC	2 cut(s)	439, 788
AlwNI	CAGNNNCTG	2 cut(s)	722, 842
AoxI	GGCC	1 cut(s)	736
ApeKI	GCWGC	3 cut(s)	452, 722, 779
ApoI	RAATTY	2 cut(s)	101, 493
ArsI	GACNNNNNNTTYG	2 cut(s)	26, 58
Asp700I	GAANNNNTTC	3 cut(s)	10, 297, 377
AspLEI	GCGC	1 cut(s)	25
AspS9I	GGNCC	1 cut(s)	736
AsuHPI	GGTGA	3 cut(s)	68, 302, 629
BaeGI	GKGCMC	1 cut(s)	706
BanI	GGYRCC	1 cut(s)	22
BanII	GRGCYC	1 cut(s)	536
BbvI	GCAGC	3 cut(s)	464, 709, 766
BccI	CCATC	5 cut(s)	47, 205, 544, 601, 608
BcoDI	GTCTC	1 cut(s)	423
BfaI	CTAG	1 cut(s)	467
BfoI	RGCGCY	1 cut(s)	26
BglII	AGATCT	1 cut(s)	295
BisI	GCNGC	3 cut(s)	453, 723, 780
BlsI	GCNGC	3 cut(s)	454, 724, 781
BmgT120I	GGNCC	1 cut(s)	736
BmiI	GGNNCC	2 cut(s)	24, 408
BmsI	GCATC	4 cut(s)	193, 289, 541, 807
BpuEI	CTTGAG	4 cut(s)	242, 251, 367, 371
BsaHI	GRCGYC	1 cut(s)	23
BsaI	GGTCTC	1 cut(s)	423
BsaWI	WCCGGW	1 cut(s)	146
Bse1I	ACTGG	3 cut(s)	410, 565, 650
BseGI	GGATG	4 cut(s)	103, 124, 172, 448
BseMII	CTCAG	1 cut(s)	198
BseNI	ACTGG	3 cut(s)	410, 565, 650
BseRI	GAGGAG	2 cut(s)	107, 128
BseSI	GKGCMC	1 cut(s)	706
BseXI	GCAGC	3 cut(s)	464, 709, 766
Bsh1285I	CGRYCG	1 cut(s)	833
BshFI	GGCC	1 cut(s)	738
BshNI	GGYRCC	1 cut(s)	22
BsiEI	CGRYCG	1 cut(s)	833
BsiSI	CCGG	1 cut(s)	147
BslFI	GGGAC	1 cut(s)	353
BsmAI	GTCTC	1 cut(s)	423
BsmFI	GGGAC	1 cut(s)	353
BsmI	GAATGC	2 cut(s)	454, 583
BsnI	GGCC	1 cut(s)	738
Bso31I	GGTCTC	1 cut(s)	423
Bsp1286I	GDGCHC	2 cut(s)	536, 706
Bsp143I	GATC	6 cut(s)	295, 431, 463, 575, 793, 830
BspACI	CCGC	1 cut(s)	153
BspANI	GGCC	1 cut(s)	738
BspCNI	CTCAG	1 cut(s)	199
BspLI	GGNNCC	2 cut(s)	24, 408
BspPI	GGATC	2 cut(s)	439, 788
BspQI	GCTCTTC	1 cut(s)	246
BspT107I	GGYRCC	1 cut(s)	22
BspTNI	GGTCTC	1 cut(s)	423
BsrI	ACTGG	3 cut(s)	410, 565, 650
BssMI	GATC	6 cut(s)	295, 431, 463, 575, 793, 830
BssNI	GRCGYC	1 cut(s)	23
Bst4CI	ACNGT	2 cut(s)	38, 856
Bst6I	CTCTTC	5 cut(s)	84, 156, 168, 246, 504
BstACI	GRCGYC	1 cut(s)	23
BstDEI	CTNAG	3 cut(s)	207, 579, 597
BstF5I	GGATG	4 cut(s)	103, 124, 172, 448
BstH2I	RGCGCY	1 cut(s)	26
BstHHI	GCGC	1 cut(s)	25
BstKTI	GATC	6 cut(s)	298, 434, 466, 578, 796, 833
BstMAI	GTCTC	1 cut(s)	423
BstMBI	GATC	6 cut(s)	295, 431, 463, 575, 793, 830
BstMCI	CGRYCG	1 cut(s)	833
BstMWI	GCNNNNNNNGC	1 cut(s)	826
BstSLI	GKGCMC	1 cut(s)	706
BstV1I	GCAGC	3 cut(s)	464, 709, 766
BstX2I	RGATCY	2 cut(s)	295, 793
BstYI	RGATCY	2 cut(s)	295, 793
BsuRI	GGCC	1 cut(s)	738
BtsCI	GGATG	4 cut(s)	103, 124, 172, 448
BtsIMutI	CAGTG	2 cut(s)	43, 314
CaiI	CAGNNNCTG	2 cut(s)	722, 842
CfoI	GCGC	1 cut(s)	25
Cfr13I	GGNCC	1 cut(s)	736
CviAII	CATG	3 cut(s)	71, 235, 437
DdeI	CTNAG	3 cut(s)	207, 579, 597
DinI	GGCGCC	1 cut(s)	24
DpnI	GATC	6 cut(s)	297, 433, 465, 577, 795, 832
DpnII	GATC	6 cut(s)	295, 431, 463, 575, 793, 830
Eam1104I	CTCTTC	5 cut(s)	84, 156, 168, 246, 504
EarI	CTCTTC	5 cut(s)	84, 156, 168, 246, 504
Eco24I	GRGCYC	1 cut(s)	536
Eco31I	GGTCTC	1 cut(s)	423
Eco57I	CTGAAG	2 cut(s)	338, 353
EcoRI	GAATTC	1 cut(s)	493
EcoT38I	GRGCYC	1 cut(s)	536
EgeI	GGCGCC	1 cut(s)	24
EheI	GGCGCC	1 cut(s)	24
FaeI	CATG	3 cut(s)	74, 238, 440
FaiI	YATR	7 cut(s)	72, 83, 236, 438, 457, 786, 788
FaqI	GGGAC	1 cut(s)	353
FatI	CATG	3 cut(s)	70, 234, 436
Fnu4HI	GCNGC	3 cut(s)	453, 723, 780
FokI	GGATG	4 cut(s)	110, 131, 179, 455
FriOI	GRGCYC	1 cut(s)	536
Fsp4HI	GCNGC	3 cut(s)	453, 723, 780
FspBI	CTAG	1 cut(s)	467
GlaI	GCGC	1 cut(s)	24
GluI	GCNGC	3 cut(s)	453, 723, 780
HaeII	RGCGCY	1 cut(s)	26
HaeIII	GGCC	1 cut(s)	738
HapII	CCGG	1 cut(s)	147
HhaI	GCGC	1 cut(s)	25
Hin1I	GRCGYC	1 cut(s)	23
Hin1II	CATG	3 cut(s)	74, 238, 440
Hin6I	GCGC	1 cut(s)	23
HinP1I	GCGC	1 cut(s)	23
HincII	GTYRAC	1 cut(s)	712
HindII	GTYRAC	1 cut(s)	712
HindIII	AAGCTT	1 cut(s)	747
HinfI	GANTC	3 cut(s)	143, 271, 360
HpaII	CCGG	1 cut(s)	147
HphI	GGTGA	3 cut(s)	68, 302, 629
Hpy166II	GTNNAC	1 cut(s)	712
Hpy188I	TCNGA	6 cut(s)	359, 372, 463, 589, 671, 759
Hpy188III	TCNNGA	7 cut(s)	15, 248, 268, 350, 503, 570, 654
Hpy8I	GTNNAC	1 cut(s)	712
HpyAV	CCTTC	1 cut(s)	21
HpyCH4III	ACNGT	2 cut(s)	38, 856
HpyCH4V	TGCA	4 cut(s)	452, 511, 554, 820
HpyF10VI	GCNNNNNNNGC	1 cut(s)	826
HpyF3I	CTNAG	3 cut(s)	207, 579, 597
Hsp92I	GRCGYC	1 cut(s)	23
Hsp92II	CATG	3 cut(s)	74, 238, 440
HspAI	GCGC	1 cut(s)	23
KasI	GGCGCC	1 cut(s)	22
Kzo9I	GATC	6 cut(s)	295, 431, 463, 575, 793, 830
LguI	GCTCTTC	1 cut(s)	246
LmnI	GCTCC	1 cut(s)	406
Lsp1109I	GCAGC	3 cut(s)	464, 709, 766
LweI	GCATC	4 cut(s)	193, 289, 541, 807
MaeI	CTAG	1 cut(s)	467
MaeIII	GTNAC	4 cut(s)	32, 245, 469, 563
MalI	GATC	6 cut(s)	297, 433, 465, 577, 795, 832
MboI	GATC	6 cut(s)	295, 431, 463, 575, 793, 830
MflI	RGATCY	2 cut(s)	295, 793
MhlI	GDGCHC	2 cut(s)	536, 706
MluCI	AATT	3 cut(s)	101, 493, 681
Mly113I	GGCGCC	1 cut(s)	23
MroXI	GAANNNNTTC	3 cut(s)	10, 297, 377
MseI	TTAA	4 cut(s)	732, 753, 810, 865
MslI	CAYNNNNRTG	2 cut(s)	288, 441
MspI	CCGG	1 cut(s)	147
Mva1269I	GAATGC	2 cut(s)	454, 583
MwoI	GCNNNNNNNGC	1 cut(s)	826
NarI	GGCGCC	1 cut(s)	23
NdeII	GATC	6 cut(s)	295, 431, 463, 575, 793, 830
NlaIII	CATG	3 cut(s)	74, 238, 440
NlaIV	GGNNCC	2 cut(s)	24, 408
NmuCI	GTSAC	2 cut(s)	32, 245
OliI	CACNNNNGTG	1 cut(s)	288
PciSI	GCTCTTC	1 cut(s)	246
PctI	GAATGC	2 cut(s)	454, 583
PdmI	GAANNNNTTC	3 cut(s)	10, 297, 377
PfeI	GAWTC	3 cut(s)	143, 271, 360
PkrI	GCNGC	3 cut(s)	454, 724, 781
Ple19I	CGATCG	1 cut(s)	833
PluTI	GGCGCC	1 cut(s)	26
PspN4I	GGNNCC	2 cut(s)	24, 408
PspPI	GGNCC	1 cut(s)	736
PstNI	CAGNNNCTG	2 cut(s)	722, 842
PsuI	RGATCY	2 cut(s)	295, 793
PvuI	CGATCG	1 cut(s)	833
RseI	CAYNNNNRTG	2 cut(s)	288, 441
SapI	GCTCTTC	1 cut(s)	246
SaqAI	TTAA	4 cut(s)	732, 753, 810, 865
SatI	GCNGC	3 cut(s)	453, 723, 780
Sau3AI	GATC	6 cut(s)	295, 431, 463, 575, 793, 830
Sau96I	GGNCC	1 cut(s)	736
SduI	GDGCHC	2 cut(s)	536, 706
SetI	ASST	7 cut(s)	78, 310, 419, 664, 711, 721, 751
SfaNI	GCATC	4 cut(s)	193, 289, 541, 807
SfoI	GGCGCC	1 cut(s)	24
SmiMI	CAYNNNNRTG	2 cut(s)	288, 441
SmlI	CTYRAG	4 cut(s)	221, 266, 350, 382
SmoI	CTYRAG	4 cut(s)	221, 266, 350, 382
Sse9I	AATT	3 cut(s)	101, 493, 681
SsiI	CCGC	1 cut(s)	153
SspDI	GGCGCC	1 cut(s)	22
SspMI	CTAG	1 cut(s)	467
TaaI	ACNGT	2 cut(s)	38, 856
TaqI	TCGA	1 cut(s)	14
TasI	AATT	3 cut(s)	101, 493, 681
TfiI	GAWTC	3 cut(s)	143, 271, 360
Tru1I	TTAA	4 cut(s)	732, 753, 810, 865
Tru9I	TTAA	4 cut(s)	732, 753, 810, 865
TscAI	CASTG	2 cut(s)	43, 321
TseFI	GTSAC	2 cut(s)	32, 245
TseI	GCWGC	3 cut(s)	452, 722, 779
Tsp45I	GTSAC	2 cut(s)	32, 245
TspDTI	ATGAA	4 cut(s)	114, 135, 150, 183
TspRI	CASTG	2 cut(s)	43, 321
XapI	RAATTY	2 cut(s)	101, 493
XmnI	GAANNNNTTC	3 cut(s)	10, 297, 377
XspI	CTAG	1 cut(s)	467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.