Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0002510

Physical Location & Seq

Genomic Coordinates Reverse (-)

7733405 .. 7734336

Gene Structure 932 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g08340.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGGCAGTTGGAAGAGACATTTTAAAGAATCTGAATCGGCACAAGGACGAAGATCTTCTTAAAAGTCAAGCAGTGAAGAACCAAAGGAATGGCTACTTTCAGAAACAAATCGATAGAGGAATGGCAGAGGAAGACAGAGGTGACCACAGGTGCTACTGCTATAAAAGCAAACTGCATGCTTTTGATCAGAATATTAGTGAACAAGTTGCTTCTTATATGAGAGATCCAAGCAAAATGGTTAGGCAGGTCAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AATF-Che1 TRAUB

Protein Analysis

85

Amino Acids

9.96

Weight (kDa)

9.43

Isoelectric Point (pI)

45.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61330 AT5G61330 AT5G61330
fragaria_vesca	FvH4_7g09370 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810
malus_domestica	MD02G1217000.v1.1 MD02G1263900.v1.1 MD02G1264000.v1.1 MD07G1073400.v1.1 MD07G1101900.v1.1 MD07G1102000.v1.1 MD07G1102300.v1.1 MD07G1103300.v1.1 MD08G1040900.v1.1
prunus_persica	Prupe.2G127200_v2.0.a1 Prupe.2G127200_v2.0.a1 Prupe.2G127200_v2.0.a1 Prupe.2G127200_v2.0.a1
pyrus_communis	pycom02g17860 pycom07g05740 pycom07g05770 pycom07g08340
rosa_chinensis	RchiOBHm_Chr1g0346971
rosa_laevigata	RLG00000028767
rosa_multiflora	Rmu_co8367419.1_g000001 Rmu_sc0001731.1_g000013 Rmu_sc0002705.1_g000017 Rmu_sc0008581.1_g000020
rosa_roxburghii	Rroxscaffold_4G00308010
rosa_samantha	Rh1AG202700 Rh1BG168600 Rh1BG168700 Rh1CG187400 Rh1DG199300 Rh1DG199400
rosa_wichuraiana	Rw1G016980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	235
AclWI	GGATC	1 cut(s)	218
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	1 cut(s)	218
Asp700I	GAANNNNTTC	1 cut(s)	54
AsuHPI	GGTGA	1 cut(s)	152
BbsI	GAAGAC	1 cut(s)	138
BclI	TGATCA	1 cut(s)	184
BcoDI	GTCTC	1 cut(s)	9
BfuAI	ACCTGC	1 cut(s)	235
BglII	AGATCT	1 cut(s)	52
BpiI	GAAGAC	1 cut(s)	138
Bsa29I	ATCGAT	1 cut(s)	111
BseCI	ATCGAT	1 cut(s)	111
BshVI	ATCGAT	1 cut(s)	111
BsmAI	GTCTC	1 cut(s)	9
Bsp143I	GATC	3 cut(s)	52, 184, 223
BspDI	ATCGAT	1 cut(s)	111
BspMI	ACCTGC	1 cut(s)	235
BspPI	GGATC	1 cut(s)	218
BssMI	GATC	3 cut(s)	52, 184, 223
Bst6I	CTCTTC	1 cut(s)	7
BstC8I	GCNNGC	1 cut(s)	177
BstEII	GGTNACC	1 cut(s)	140
BstKTI	GATC	3 cut(s)	55, 187, 226
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	3 cut(s)	52, 184, 223
BstMWI	GCNNNNNNNGC	1 cut(s)	165
BstNSI	RCATGY	1 cut(s)	179
BstPI	GGTNACC	1 cut(s)	140
BstV2I	GAAGAC	1 cut(s)	138
BstX2I	RGATCY	2 cut(s)	52, 223
BstXI	CCANNNNNNTGG	1 cut(s)	89
BstYI	RGATCY	2 cut(s)	52, 223
Bsu15I	ATCGAT	1 cut(s)	111
BsuTUI	ATCGAT	1 cut(s)	111
BtsI	GCAGTG	1 cut(s)	78
BtsIMutI	CAGTG	1 cut(s)	78
BveI	ACCTGC	1 cut(s)	235
Cac8I	GCNNGC	1 cut(s)	177
ClaI	ATCGAT	1 cut(s)	111
CviAII	CATG	1 cut(s)	176
CviJI	RGCY	1 cut(s)	93
CviKI_1	RGCY	1 cut(s)	93
DpnI	GATC	3 cut(s)	54, 186, 225
DpnII	GATC	3 cut(s)	52, 184, 223
DraI	TTTAAA	1 cut(s)	24
Eam1104I	CTCTTC	1 cut(s)	7
EarI	CTCTTC	1 cut(s)	7
Eco91I	GGTNACC	1 cut(s)	140
EcoO65I	GGTNACC	1 cut(s)	140
FaeI	CATG	1 cut(s)	179
FaiI	YATR	4 cut(s)	162, 177, 216, 218
FalI	AAGNNNNNCTT	2 cut(s)	42, 74
FatI	CATG	1 cut(s)	175
FbaI	TGATCA	1 cut(s)	184
Hin1II	CATG	1 cut(s)	179
HinfI	GANTC	2 cut(s)	28, 34
HphI	GGTGA	1 cut(s)	152
Hpy166II	GTNNAC	1 cut(s)	200
Hpy188I	TCNGA	4 cut(s)	33, 102, 189, 251
Hpy8I	GTNNAC	1 cut(s)	200
HpyCH4V	TGCA	1 cut(s)	175
HpyF10VI	GCNNNNNNNGC	1 cut(s)	165
Hsp92II	CATG	1 cut(s)	179
Ksp22I	TGATCA	1 cut(s)	184
Kzo9I	GATC	3 cut(s)	52, 184, 223
LpnPI	CCDG	2 cut(s)	133, 230
MaeIII	GTNAC	1 cut(s)	140
MalI	GATC	3 cut(s)	54, 186, 225
MboI	GATC	3 cut(s)	52, 184, 223
MboII	GAAGA	5 cut(s)	24, 47, 62, 88, 143
MflI	RGATCY	2 cut(s)	52, 223
MnlI	CCTC	3 cut(s)	110, 121, 131
MroXI	GAANNNNTTC	1 cut(s)	54
MseI	TTAA	2 cut(s)	23, 60
MwoI	GCNNNNNNNGC	1 cut(s)	165
NdeII	GATC	3 cut(s)	52, 184, 223
NlaIII	CATG	1 cut(s)	179
NmuCI	GTSAC	1 cut(s)	140
NspI	RCATGY	1 cut(s)	179
PaeI	GCATGC	1 cut(s)	179
PdmI	GAANNNNTTC	1 cut(s)	54
PfeI	GAWTC	2 cut(s)	28, 34
PspEI	GGTNACC	1 cut(s)	140
PsuI	RGATCY	2 cut(s)	52, 223
SaqAI	TTAA	2 cut(s)	23, 60
Sau3AI	GATC	3 cut(s)	52, 184, 223
SetI	ASST	3 cut(s)	142, 152, 249
SgeI	CNNG	6 cut(s)	55, 80, 160, 188, 215, 240
SphI	GCATGC	1 cut(s)	179
SspI	AATATT	1 cut(s)	193
TaqI	TCGA	1 cut(s)	111
TfiI	GAWTC	2 cut(s)	28, 34
Tru1I	TTAA	2 cut(s)	23, 60
Tru9I	TTAA	2 cut(s)	23, 60
TscAI	CASTG	1 cut(s)	78
TseFI	GTSAC	1 cut(s)	140
Tsp45I	GTSAC	1 cut(s)	140
TspRI	CASTG	1 cut(s)	78
XceI	RCATGY	1 cut(s)	179
XmnI	GAANNNNTTC	1 cut(s)	54

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.