Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0002510

Physical Location & Seq

Genomic Coordinates Reverse (-)

26992706 .. 26994267

Gene Structure 1562 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG168700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 366 bp

ATGGAAGACCTTGAGAAACAATACATGGATATTCGTCACGAAGAGCAAGATATTCTCAAGAATCTAAAGCATCACAAGGGTGAAGATCTTCTCAAAGGTCAAGCACTGAAGAACCAAAAGGCTATCTGGGACAAAACTCTTGAGTTCAGATTCTTGCTTCAGAAAGCATTCTCAAGTTCAAATAGATTACCACAGGAGCCAGTTAGGTCTCTGTTCTGTGGATCACATGAGGATGTGAATGCAGCATATTCCGATCTAGTTACATCATCAAAGAAAACTTTGAATTCTCTTCTGGAACTGCAAGAGGCTTTGGTTGAAAAGAACCCATCTATCACACAAGATGCAACAACTGGTAACTCTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AATF-Che1 TRAUB

Protein Analysis

121

Amino Acids

13.77

Weight (kDa)

5.79

Isoelectric Point (pI)

48.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AATF-Che1	PF13339	29 - 114	8e-25	Apoptosis antagonizing transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0002510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61330 AT5G61330 AT5G61330
fragaria_vesca	FvH4_7g09370 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810
malus_domestica	MD02G1217000.v1.1 MD02G1263900.v1.1 MD02G1264000.v1.1 MD07G1073400.v1.1 MD07G1101900.v1.1 MD07G1102000.v1.1 MD07G1102300.v1.1 MD07G1103300.v1.1 MD08G1040900.v1.1
prunus_persica	Prupe.2G127200_v2.0.a1 Prupe.2G127200_v2.0.a1 Prupe.2G127200_v2.0.a1 Prupe.2G127200_v2.0.a1
pyrus_communis	pycom02g17860 pycom07g05740 pycom07g05770 pycom07g08340
rosa_chinensis	RchiOBHm_Chr1g0346971
rosa_laevigata	RLG00000028767
rosa_multiflora	Rmu_co8367419.1_g000001 Rmu_sc0001731.1_g000013 Rmu_sc0002705.1_g000017 Rmu_sc0008581.1_g000020
rosa_roxburghii	Rroxscaffold_4G00308010
rosa_samantha	Rh1AG202700 Rh1BG168600 Rh1BG168700 Rh1CG187400 Rh1DG199300 Rh1DG199400
rosa_wichuraiana	Rw1G016980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	229
AcsI	RAATTY	1 cut(s)	283
AcuI	CTGAAG	2 cut(s)	128, 143
AgsI	TTSAA	3 cut(s)	180, 283, 317
AleI	CACNNNNGTG	1 cut(s)	78
Alw26I	GTCTC	1 cut(s)	213
AlwI	GGATC	1 cut(s)	229
ApeKI	GCWGC	1 cut(s)	242
ApoI	RAATTY	1 cut(s)	283
Asp700I	GAANNNNTTC	2 cut(s)	87, 167
AsuHPI	GGTGA	1 cut(s)	92
BbsI	GAAGAC	1 cut(s)	12
BbvI	GCAGC	1 cut(s)	254
BccI	CCATC	1 cut(s)	334
BcoDI	GTCTC	1 cut(s)	213
BfaI	CTAG	1 cut(s)	257
BglII	AGATCT	1 cut(s)	85
BisI	GCNGC	1 cut(s)	243
BlsI	GCNGC	1 cut(s)	244
BmiI	GGNNCC	1 cut(s)	198
BmsI	GCATC	2 cut(s)	79, 331
BpiI	GAAGAC	1 cut(s)	12
BpuEI	CTTGAG	4 cut(s)	32, 41, 157, 161
BsaI	GGTCTC	1 cut(s)	213
Bse1I	ACTGG	2 cut(s)	200, 355
BseGI	GGATG	1 cut(s)	238
BseNI	ACTGG	2 cut(s)	200, 355
BseXI	GCAGC	1 cut(s)	254
BslFI	GGGAC	1 cut(s)	143
BsmAI	GTCTC	1 cut(s)	213
BsmFI	GGGAC	1 cut(s)	143
BsmI	GAATGC	2 cut(s)	167, 244
Bso31I	GGTCTC	1 cut(s)	213
Bsp143I	GATC	3 cut(s)	85, 221, 253
BspLI	GGNNCC	1 cut(s)	198
BspPI	GGATC	1 cut(s)	229
BspQI	GCTCTTC	1 cut(s)	36
BspTNI	GGTCTC	1 cut(s)	213
BsrI	ACTGG	2 cut(s)	200, 355
BssMI	GATC	3 cut(s)	85, 221, 253
Bst6I	CTCTTC	2 cut(s)	36, 294
BstF5I	GGATG	1 cut(s)	238
BstKTI	GATC	3 cut(s)	88, 224, 256
BstMAI	GTCTC	1 cut(s)	213
BstMBI	GATC	3 cut(s)	85, 221, 253
BstV1I	GCAGC	1 cut(s)	254
BstV2I	GAAGAC	1 cut(s)	12
BstX2I	RGATCY	1 cut(s)	85
BstYI	RGATCY	1 cut(s)	85
BtsCI	GGATG	1 cut(s)	238
BtsIMutI	CAGTG	1 cut(s)	104
CviAII	CATG	2 cut(s)	25, 227
CviJI	RGCY	3 cut(s)	122, 199, 308
CviKI_1	RGCY	3 cut(s)	122, 199, 308
DpnI	GATC	3 cut(s)	87, 223, 255
DpnII	GATC	3 cut(s)	85, 221, 253
Eam1104I	CTCTTC	2 cut(s)	36, 294
EarI	CTCTTC	2 cut(s)	36, 294
Eco31I	GGTCTC	1 cut(s)	213
Eco57I	CTGAAG	2 cut(s)	128, 143
EcoRI	GAATTC	1 cut(s)	283
FaeI	CATG	2 cut(s)	28, 230
FaiI	YATR	3 cut(s)	26, 228, 247
FaqI	GGGAC	1 cut(s)	143
FatI	CATG	2 cut(s)	24, 226
Fnu4HI	GCNGC	1 cut(s)	243
FokI	GGATG	1 cut(s)	245
Fsp4HI	GCNGC	1 cut(s)	243
FspBI	CTAG	1 cut(s)	257
GluI	GCNGC	1 cut(s)	243
Hin1II	CATG	2 cut(s)	28, 230
HinfI	GANTC	2 cut(s)	61, 150
HphI	GGTGA	1 cut(s)	92
Hpy188I	TCNGA	3 cut(s)	149, 162, 253
Hpy188III	TCNNGA	5 cut(s)	38, 58, 140, 293, 360
HpyCH4V	TGCA	3 cut(s)	242, 301, 344
Hsp92II	CATG	2 cut(s)	28, 230
Kzo9I	GATC	3 cut(s)	85, 221, 253
LguI	GCTCTTC	1 cut(s)	36
LmnI	GCTCC	1 cut(s)	196
LpnPI	CCDG	6 cut(s)	112, 179, 213, 278, 336, 345
Lsp1109I	GCAGC	1 cut(s)	254
LweI	GCATC	2 cut(s)	79, 331
MaeI	CTAG	1 cut(s)	257
MaeIII	GTNAC	3 cut(s)	35, 259, 353
MalI	GATC	3 cut(s)	87, 223, 255
MboI	GATC	3 cut(s)	85, 221, 253
MboII	GAAGA	6 cut(s)	17, 53, 80, 95, 121, 281
MflI	RGATCY	1 cut(s)	85
MluCI	AATT	1 cut(s)	283
MnlI	CCTC	2 cut(s)	223, 298
MroXI	GAANNNNTTC	2 cut(s)	87, 167
MslI	CAYNNNNRTG	2 cut(s)	78, 231
Mva1269I	GAATGC	2 cut(s)	167, 244
NdeII	GATC	3 cut(s)	85, 221, 253
NlaIII	CATG	2 cut(s)	28, 230
NlaIV	GGNNCC	1 cut(s)	198
NmuCI	GTSAC	1 cut(s)	35
OliI	CACNNNNGTG	1 cut(s)	78
PciSI	GCTCTTC	1 cut(s)	36
PctI	GAATGC	2 cut(s)	167, 244
PdmI	GAANNNNTTC	2 cut(s)	87, 167
PfeI	GAWTC	2 cut(s)	61, 150
PkrI	GCNGC	1 cut(s)	244
PspN4I	GGNNCC	1 cut(s)	198
PsuI	RGATCY	1 cut(s)	85
RseI	CAYNNNNRTG	2 cut(s)	78, 231
SapI	GCTCTTC	1 cut(s)	36
SatI	GCNGC	1 cut(s)	243
Sau3AI	GATC	3 cut(s)	85, 221, 253
SetI	ASST	3 cut(s)	12, 100, 209
SfaNI	GCATC	2 cut(s)	79, 331
SmiMI	CAYNNNNRTG	2 cut(s)	78, 231
SmlI	CTYRAG	4 cut(s)	11, 56, 140, 172
SmoI	CTYRAG	4 cut(s)	11, 56, 140, 172
Sse9I	AATT	1 cut(s)	283
SspMI	CTAG	1 cut(s)	257
TasI	AATT	1 cut(s)	283
TfiI	GAWTC	2 cut(s)	61, 150
TscAI	CASTG	1 cut(s)	111
TseFI	GTSAC	1 cut(s)	35
TseI	GCWGC	1 cut(s)	242
Tsp45I	GTSAC	1 cut(s)	35
TspRI	CASTG	1 cut(s)	111
XapI	RAATTY	1 cut(s)	283
XmnI	GAANNNNTTC	2 cut(s)	87, 167
XspI	CTAG	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.