Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0002510

Physical Location & Seq

Genomic Coordinates Forward (+)

9016994 .. 9018382

Gene Structure 1389 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g09370.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGAGGGCACAGGCTGCTTCTATTAAAGGAAGACTACAGGCTTTTAATCAGAGTATTAGTCAACAAGTTGTTGCCTGCATGAGAGATCCAAGCAGAATGGTTAGGCAGATCCAGATGCAGATGAGGGGATCAGCAGTTGGTGTATTTGGGACTGAATTGCATTCTGATGCTGCTGCACAAGCTGATGCTGACCCTGAACTTTTGGATGACTCAGAATTTTTTGAGACAATTGACCCAACATCTTCTGGTAAACTCCTGTATAATATTCATGAGAAGATTGTAAATTTCATGGCTCCAGAGCCTAGGTTCTTCCTCCATGATCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AATF-Che1 TRAUB

Protein Analysis

109

Amino Acids

12.06

Weight (kDa)

5.2

Isoelectric Point (pI)

38.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61330 AT5G61330 AT5G61330
fragaria_vesca	FvH4_7g09370 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810
malus_domestica	MD02G1217000.v1.1 MD02G1263900.v1.1 MD02G1264000.v1.1 MD07G1073400.v1.1 MD07G1101900.v1.1 MD07G1102000.v1.1 MD07G1102300.v1.1 MD07G1103300.v1.1 MD08G1040900.v1.1
prunus_persica	Prupe.2G127200_v2.0.a1 Prupe.2G127200_v2.0.a1 Prupe.2G127200_v2.0.a1 Prupe.2G127200_v2.0.a1
pyrus_communis	pycom02g17860 pycom07g05740 pycom07g05770 pycom07g08340
rosa_chinensis	RchiOBHm_Chr1g0346971
rosa_laevigata	RLG00000028767
rosa_multiflora	Rmu_co8367419.1_g000001 Rmu_sc0001731.1_g000013 Rmu_sc0002705.1_g000017 Rmu_sc0008581.1_g000020
rosa_roxburghii	Rroxscaffold_4G00308010
rosa_samantha	Rh1AG202700 Rh1BG168600 Rh1BG168700 Rh1CG187400 Rh1DG199300 Rh1DG199400
rosa_wichuraiana	Rw1G016980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	80, 103, 136, 314
AcsI	RAATTY	2 cut(s)	215, 283
AluBI	AGCT	1 cut(s)	182
AluI	AGCT	1 cut(s)	182
Alw26I	GTCTC	1 cut(s)	218
AlwI	GGATC	4 cut(s)	80, 103, 136, 314
ApeKI	GCWGC	3 cut(s)	14, 170, 173
ApoI	RAATTY	2 cut(s)	215, 283
AspA2I	CCTAGG	1 cut(s)	302
AvrII	CCTAGG	1 cut(s)	302
BaeGI	GKGCMC	1 cut(s)	10
BbsI	GAAGAC	1 cut(s)	37
BbvI	GCAGC	2 cut(s)	157, 160
BcoDI	GTCTC	1 cut(s)	218
BfaI	CTAG	1 cut(s)	303
BfmI	CTRYAG	1 cut(s)	35
BisI	GCNGC	3 cut(s)	15, 171, 174
BlnI	CCTAGG	1 cut(s)	302
BlsI	GCNGC	3 cut(s)	16, 172, 175
BmiI	GGNNCC	1 cut(s)	294
BmsI	GCATC	3 cut(s)	105, 157, 175
BpiI	GAAGAC	1 cut(s)	37
BpmI	CTGGAG	1 cut(s)	279
BsaJI	CCNNGG	1 cut(s)	302
BseDI	CCNNGG	1 cut(s)	302
BseGI	GGATG	1 cut(s)	211
BseMII	CTCAG	1 cut(s)	225
BseSI	GKGCMC	1 cut(s)	10
BseXI	GCAGC	2 cut(s)	157, 160
BsgI	GTGCAG	1 cut(s)	159
BslFI	GGGAC	1 cut(s)	163
BsmAI	GTCTC	1 cut(s)	218
BsmFI	GGGAC	1 cut(s)	163
BsmI	GAATGC	1 cut(s)	160
Bsp1286I	GDGCHC	1 cut(s)	10
Bsp143I	GATC	4 cut(s)	85, 108, 128, 319
BspCNI	CTCAG	1 cut(s)	224
BspHI	TCATGA	1 cut(s)	268
BspLI	GGNNCC	1 cut(s)	294
BspPI	GGATC	4 cut(s)	80, 103, 136, 314
BssECI	CCNNGG	1 cut(s)	302
BssMI	GATC	4 cut(s)	85, 108, 128, 319
BssT1I	CCWWGG	1 cut(s)	302
BstAPI	GCANNNNNTGC	1 cut(s)	14
BstC8I	GCNNGC	1 cut(s)	76
BstDEI	CTNAG	1 cut(s)	211
BstF5I	GGATG	1 cut(s)	211
BstKTI	GATC	4 cut(s)	88, 111, 131, 322
BstMAI	GTCTC	1 cut(s)	218
BstMBI	GATC	4 cut(s)	85, 108, 128, 319
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 179
BstSFI	CTRYAG	1 cut(s)	35
BstSLI	GKGCMC	1 cut(s)	10
BstV1I	GCAGC	2 cut(s)	157, 160
BstV2I	GAAGAC	1 cut(s)	37
BstX2I	RGATCY	2 cut(s)	85, 108
BstYI	RGATCY	2 cut(s)	85, 108
BtsCI	GGATG	1 cut(s)	211
Cac8I	GCNNGC	1 cut(s)	76
CciI	TCATGA	1 cut(s)	268
CviAII	CATG	4 cut(s)	79, 269, 289, 317
CviJI	RGCY	5 cut(s)	14, 41, 182, 293, 301
CviKI_1	RGCY	5 cut(s)	14, 41, 182, 293, 301
DdeI	CTNAG	1 cut(s)	211
DpnI	GATC	4 cut(s)	87, 110, 130, 321
DpnII	GATC	4 cut(s)	85, 108, 128, 319
Eco130I	CCWWGG	1 cut(s)	302
EcoT14I	CCWWGG	1 cut(s)	302
ErhI	CCWWGG	1 cut(s)	302
FaeI	CATG	4 cut(s)	82, 272, 292, 320
FaiI	YATR	5 cut(s)	80, 261, 270, 290, 318
FaqI	GGGAC	1 cut(s)	163
FatI	CATG	4 cut(s)	78, 268, 288, 316
Fnu4HI	GCNGC	3 cut(s)	15, 171, 174
FokI	GGATG	1 cut(s)	218
Fsp4HI	GCNGC	3 cut(s)	15, 171, 174
FspBI	CTAG	1 cut(s)	303
GluI	GCNGC	3 cut(s)	15, 171, 174
GsuI	CTGGAG	1 cut(s)	279
Hin1II	CATG	4 cut(s)	82, 272, 292, 320
HincII	GTYRAC	1 cut(s)	62
HindII	GTYRAC	1 cut(s)	62
HinfI	GANTC	1 cut(s)	209
Hpy166II	GTNNAC	2 cut(s)	62, 251
Hpy188I	TCNGA	3 cut(s)	51, 166, 214
Hpy188III	TCNNGA	3 cut(s)	112, 269, 296
Hpy8I	GTNNAC	2 cut(s)	62, 251
HpyCH4V	TGCA	4 cut(s)	78, 118, 160, 176
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 179
HpyF3I	CTNAG	1 cut(s)	211
Hsp92II	CATG	4 cut(s)	82, 272, 292, 320
Kzo9I	GATC	4 cut(s)	85, 108, 128, 319
LmnI	GCTCC	1 cut(s)	298
LpnPI	CCDG	7 cut(s)	23, 88, 125, 207, 231, 269, 309
Lsp1109I	GCAGC	2 cut(s)	157, 160
LweI	GCATC	3 cut(s)	105, 157, 175
MaeI	CTAG	1 cut(s)	303
MalI	GATC	4 cut(s)	87, 110, 130, 321
MboI	GATC	4 cut(s)	85, 108, 128, 319
MboII	GAAGA	4 cut(s)	42, 234, 286, 301
MfeI	CAATTG	1 cut(s)	228
MflI	RGATCY	2 cut(s)	85, 108
MhlI	GDGCHC	1 cut(s)	10
MluCI	AATT	4 cut(s)	155, 215, 228, 283
MlyI	GAGTC	1 cut(s)	203
MnlI	CCTC	2 cut(s)	117, 323
MseI	TTAA	2 cut(s)	24, 45
MslI	CAYNNNNRTG	1 cut(s)	165
MunI	CAATTG	1 cut(s)	228
Mva1269I	GAATGC	1 cut(s)	160
MwoI	GCNNNNNNNGC	2 cut(s)	14, 179
NdeII	GATC	4 cut(s)	85, 108, 128, 319
NlaIII	CATG	4 cut(s)	82, 272, 292, 320
NlaIV	GGNNCC	1 cut(s)	294
PagI	TCATGA	1 cut(s)	268
PctI	GAATGC	1 cut(s)	160
PkrI	GCNGC	3 cut(s)	16, 172, 175
PleI	GAGTC	1 cut(s)	203
PpsI	GAGTC	1 cut(s)	203
PspN4I	GGNNCC	1 cut(s)	294
PsuI	RGATCY	2 cut(s)	85, 108
RseI	CAYNNNNRTG	1 cut(s)	165
SaqAI	TTAA	2 cut(s)	24, 45
SatI	GCNGC	3 cut(s)	15, 171, 174
Sau3AI	GATC	4 cut(s)	85, 108, 128, 319
SchI	GAGTC	1 cut(s)	203
SduI	GDGCHC	1 cut(s)	10
SetI	ASST	2 cut(s)	184, 308
SfaNI	GCATC	3 cut(s)	105, 157, 175
SfcI	CTRYAG	1 cut(s)	35
SmiMI	CAYNNNNRTG	1 cut(s)	165
Sse9I	AATT	4 cut(s)	155, 215, 228, 283
SspI	AATATT	1 cut(s)	265
SspMI	CTAG	1 cut(s)	303
StyI	CCWWGG	1 cut(s)	302
TasI	AATT	4 cut(s)	155, 215, 228, 283
Tru1I	TTAA	2 cut(s)	24, 45
Tru9I	TTAA	2 cut(s)	24, 45
TseI	GCWGC	3 cut(s)	14, 170, 173
TspDTI	ATGAA	2 cut(s)	257, 277
XapI	RAATTY	2 cut(s)	215, 283
XmaJI	CCTAGG	1 cut(s)	302
XspI	CTAG	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.