Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0002510

Physical Location & Seq

Genomic Coordinates Reverse (-)

11425192 .. 11429340

Gene Structure 4149 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1102000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGAAGAACTCGAGAAAGAATACATGAATCTTCGTCATCAGGAGCAAGATATTTTAAAGAATCTAAAGCGTCATAAGGACAAAGATCTTCTTAAAGGTCACTCAGTGAAGAACCAAAAGGACAAAGCTCTTGAGTTCAGATTCTTGCTTCAGAAAGCATTCTCAAGTTCAAATAGACAACCACAGGAGCCAGTTAGGTCTTTATTTTGTGATTCACATAACAGCGTCAATGCAGCATTTTCTGATCTAGTTGAGTCATCAAAGAGAACTTTGGATTCTCTAGCGGAACTTCAAGAGGCTTTACTTGAGAAGAACCCGTCCATCGTTCAAGCAACAGATAGTAAATCTGGACGATCTAAGAAGTCACAGTTATCTAAGAACAATGACAATGATGGTTATGACGATTGGTCACAGATTTCTCAGTTGCCGTCGGGGAACAAATTTATAGACAAATGGCAGAGGAAGACAGAGGTGACCACAGGTGTTGCTGCTATTAAAAGCAAACTGCATGGTATTAATCAGAATATTAGTGAACAAGTTGCTTCTTATATGAGAGATCCAAGCAGAACGATTAGGCAGATGCAAATGAGGAAATCAGCAGTTGCTATATTTGGCACTGTAGGACATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AATF-Che1 TRAUB

Protein Analysis

210

Amino Acids

23.85

Weight (kDa)

9.42

Isoelectric Point (pI)

54.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AATF-Che1	PF13339	29 - 155	3.6e-19	Apoptosis antagonizing transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61330 AT5G61330 AT5G61330
fragaria_vesca	FvH4_7g09370 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810
malus_domestica	MD02G1217000.v1.1 MD02G1263900.v1.1 MD02G1264000.v1.1 MD07G1073400.v1.1 MD07G1101900.v1.1 MD07G1102000.v1.1 MD07G1102300.v1.1 MD07G1103300.v1.1 MD08G1040900.v1.1
prunus_persica	Prupe.2G127200_v2.0.a1 Prupe.2G127200_v2.0.a1 Prupe.2G127200_v2.0.a1 Prupe.2G127200_v2.0.a1
pyrus_communis	pycom02g17860 pycom07g05740 pycom07g05770 pycom07g08340
rosa_chinensis	RchiOBHm_Chr1g0346971
rosa_laevigata	RLG00000028767
rosa_multiflora	Rmu_co8367419.1_g000001 Rmu_sc0001731.1_g000013 Rmu_sc0002705.1_g000017 Rmu_sc0008581.1_g000020
rosa_roxburghii	Rroxscaffold_4G00308010
rosa_samantha	Rh1AG202700 Rh1BG168600 Rh1BG168700 Rh1CG187400 Rh1DG199300 Rh1DG199400
rosa_wichuraiana	Rw1G016980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	284
AclWI	GGATC	1 cut(s)	551
AcsI	RAATTY	1 cut(s)	440
AcuI	CTGAAG	1 cut(s)	134
AdeI	CACNNNGTG	1 cut(s)	106
AgsI	TTSAA	3 cut(s)	171, 293, 329
AhdI	GACNNNNNGTC	1 cut(s)	406
AluBI	AGCT	1 cut(s)	128
AluI	AGCT	1 cut(s)	128
AlwI	GGATC	1 cut(s)	551
Ama87I	CYCGRG	1 cut(s)	11
ApeKI	GCWGC	2 cut(s)	233, 488
ApoI	RAATTY	1 cut(s)	440
AseI	ATTAAT	1 cut(s)	516
Asp700I	GAANNNNTTC	1 cut(s)	158
AsuHPI	GGTGA	1 cut(s)	484
AvaI	CYCGRG	1 cut(s)	11
BbsI	GAAGAC	1 cut(s)	470
BbvI	GCAGC	2 cut(s)	245, 475
BccI	CCATC	2 cut(s)	329, 386
BceAI	ACGGC	1 cut(s)	412
BfaI	CTAG	2 cut(s)	248, 281
BfmI	CTRYAG	1 cut(s)	618
BglII	AGATCT	1 cut(s)	85
BisI	GCNGC	2 cut(s)	234, 489
BlsI	GCNGC	2 cut(s)	235, 490
BmeRI	GACNNNNNGTC	1 cut(s)	406
BmeT110I	CYCGRG	1 cut(s)	11
BmiI	GGNNCC	1 cut(s)	189
BmsI	GCATC	1 cut(s)	570
BpiI	GAAGAC	1 cut(s)	470
BpuEI	CTTGAG	3 cut(s)	148, 152, 326
Bse1I	ACTGG	1 cut(s)	191
BseMII	CTCAG	2 cut(s)	117, 434
BseNI	ACTGG	1 cut(s)	191
BseXI	GCAGC	2 cut(s)	245, 475
BsiHKCI	CYCGRG	1 cut(s)	11
BsmI	GAATGC	1 cut(s)	158
BsoBI	CYCGRG	1 cut(s)	11
Bsp143I	GATC	4 cut(s)	85, 244, 353, 556
BspACI	CCGC	1 cut(s)	284
BspCNI	CTCAG	2 cut(s)	116, 433
BspLI	GGNNCC	1 cut(s)	189
BspPI	GGATC	1 cut(s)	551
BsrI	ACTGG	1 cut(s)	191
BssMI	GATC	4 cut(s)	85, 244, 353, 556
Bst4CI	ACNGT	2 cut(s)	369, 619
BstDEI	CTNAG	4 cut(s)	103, 357, 375, 420
BstEII	GGTNACC	1 cut(s)	472
BstKTI	GATC	4 cut(s)	88, 247, 356, 559
BstMBI	GATC	4 cut(s)	85, 244, 353, 556
BstPI	GGTNACC	1 cut(s)	472
BstSFI	CTRYAG	1 cut(s)	618
BstV1I	GCAGC	2 cut(s)	245, 475
BstV2I	GAAGAC	1 cut(s)	470
BstX2I	RGATCY	2 cut(s)	85, 556
BstYI	RGATCY	2 cut(s)	85, 556
BtsIMutI	CAGTG	2 cut(s)	111, 615
CseI	GACGC	2 cut(s)	59, 214
CspCI	CAANNNNNGTGG	2 cut(s)	466, 501
CviAII	CATG	2 cut(s)	25, 509
CviJI	RGCY	3 cut(s)	128, 190, 299
CviKI_1	RGCY	3 cut(s)	128, 190, 299
DdeI	CTNAG	4 cut(s)	103, 357, 375, 420
DpnI	GATC	4 cut(s)	87, 246, 355, 558
DpnII	GATC	4 cut(s)	85, 244, 353, 556
DraI	TTTAAA	1 cut(s)	57
DraIII	CACNNNGTG	1 cut(s)	106
DriI	GACNNNNNGTC	1 cut(s)	406
Eam1105I	GACNNNNNGTC	1 cut(s)	406
Eco57I	CTGAAG	1 cut(s)	134
Eco88I	CYCGRG	1 cut(s)	11
Eco91I	GGTNACC	1 cut(s)	472
EcoO65I	GGTNACC	1 cut(s)	472
FaeI	CATG	2 cut(s)	28, 512
FaiI	YATR	9 cut(s)	26, 75, 219, 399, 446, 510, 549, 551, 608
FalI	AAGNNNNNCTT	2 cut(s)	75, 107
FatI	CATG	2 cut(s)	24, 508
Fnu4HI	GCNGC	2 cut(s)	234, 489
Fsp4HI	GCNGC	2 cut(s)	234, 489
FspBI	CTAG	2 cut(s)	248, 281
GluI	GCNGC	2 cut(s)	234, 489
HgaI	GACGC	2 cut(s)	59, 214
Hin1II	CATG	2 cut(s)	28, 512
HinfI	GANTC	6 cut(s)	28, 61, 141, 212, 254, 275
HphI	GGTGA	1 cut(s)	484
Hpy166II	GTNNAC	1 cut(s)	533
Hpy188I	TCNGA	4 cut(s)	140, 153, 244, 522
Hpy188III	TCNNGA	5 cut(s)	13, 41, 131, 293, 348
Hpy8I	GTNNAC	1 cut(s)	533
Hpy99I	CGWCG	1 cut(s)	433
HpyCH4III	ACNGT	2 cut(s)	369, 619
HpyCH4V	TGCA	3 cut(s)	233, 508, 583
HpyF3I	CTNAG	4 cut(s)	103, 357, 375, 420
Hsp92II	CATG	2 cut(s)	28, 512
Kzo9I	GATC	4 cut(s)	85, 244, 353, 556
LmnI	GCTCC	2 cut(s)	43, 187
LpnPI	CCDG	5 cut(s)	26, 170, 204, 333, 465
Lsp1109I	GCAGC	2 cut(s)	245, 475
LweI	GCATC	1 cut(s)	570
MaeI	CTAG	2 cut(s)	248, 281
MaeIII	GTNAC	4 cut(s)	98, 363, 408, 472
MalI	GATC	4 cut(s)	87, 246, 355, 558
MboI	GATC	4 cut(s)	85, 244, 353, 556
MboII	GAAGA	6 cut(s)	17, 23, 80, 121, 322, 475
MflI	RGATCY	2 cut(s)	85, 556
MluCI	AATT	1 cut(s)	440
MlyI	GAGTC	1 cut(s)	263
MnlI	CCTC	4 cut(s)	289, 453, 463, 582
MroXI	GAANNNNTTC	1 cut(s)	158
MseI	TTAA	5 cut(s)	56, 93, 495, 516, 628
Mva1269I	GAATGC	1 cut(s)	158
NdeII	GATC	4 cut(s)	85, 244, 353, 556
NlaIII	CATG	2 cut(s)	28, 512
NlaIV	GGNNCC	1 cut(s)	189
NmuCI	GTSAC	4 cut(s)	98, 363, 408, 472
PaeR7I	CTCGAG	1 cut(s)	11
PctI	GAATGC	1 cut(s)	158
PdmI	GAANNNNTTC	1 cut(s)	158
PfeI	GAWTC	5 cut(s)	28, 61, 141, 212, 275
PkrI	GCNGC	2 cut(s)	235, 490
PleI	GAGTC	1 cut(s)	262
PpsI	GAGTC	1 cut(s)	262
PshBI	ATTAAT	1 cut(s)	516
PspEI	GGTNACC	1 cut(s)	472
PspN4I	GGNNCC	1 cut(s)	189
PsuI	RGATCY	2 cut(s)	85, 556
SaqAI	TTAA	5 cut(s)	56, 93, 495, 516, 628
SatI	GCNGC	2 cut(s)	234, 489
Sau3AI	GATC	4 cut(s)	85, 244, 353, 556
SchI	GAGTC	1 cut(s)	263
SetI	ASST	5 cut(s)	100, 130, 200, 474, 484
SfaNI	GCATC	1 cut(s)	570
SfcI	CTRYAG	1 cut(s)	618
Sfr274I	CTCGAG	1 cut(s)	11
SlaI	CTCGAG	1 cut(s)	11
SmlI	CTYRAG	4 cut(s)	11, 131, 163, 305
SmoI	CTYRAG	4 cut(s)	11, 131, 163, 305
Sse9I	AATT	1 cut(s)	440
SsiI	CCGC	1 cut(s)	284
SspI	AATATT	1 cut(s)	526
SspMI	CTAG	2 cut(s)	248, 281
TaaI	ACNGT	2 cut(s)	369, 619
TaqI	TCGA	1 cut(s)	12
TasI	AATT	1 cut(s)	440
TfiI	GAWTC	5 cut(s)	28, 61, 141, 212, 275
Tru1I	TTAA	5 cut(s)	56, 93, 495, 516, 628
Tru9I	TTAA	5 cut(s)	56, 93, 495, 516, 628
TscAI	CASTG	2 cut(s)	111, 622
TseFI	GTSAC	4 cut(s)	98, 363, 408, 472
TseI	GCWGC	2 cut(s)	233, 488
Tsp45I	GTSAC	4 cut(s)	98, 363, 408, 472
TspDTI	ATGAA	1 cut(s)	41
TspRI	CASTG	2 cut(s)	111, 622
VspI	ATTAAT	1 cut(s)	516
XapI	RAATTY	1 cut(s)	440
XhoI	CTCGAG	1 cut(s)	11
XmnI	GAANNNNTTC	1 cut(s)	158
XspI	CTAG	2 cut(s)	248, 281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.