Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0002510

Physical Location & Seq

Genomic Coordinates Forward (+)

5007649 .. 5008559

Gene Structure 911 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g05740.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGGAAGAACTAGAGAAAGAATGCATGAATCTTCGTCGTCAAGAGCAAGATATTTTAAAGAATCTAAAGGGTCATAAGGACGAAGATCTTCTTAAAGGTCAAGCAGTGAAGAACCAAAAGGCTCTCTGGGACAAAGCTCTTGAGTTCAGATTCTTGCTTCAGAAAGCATTCTCAAGTTCACATAGATTACCGAAGGAGCCAGTGAGGTCTTTATTTTGCGATTCACATGAGGGTGTCAATGCAGCATATTCTGATCTAGTTGACTCATCAAGAGAACTTTGGACTCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AATF-Che1 TRAUB

Protein Analysis

97

Amino Acids

11.26

Weight (kDa)

6.41

Isoelectric Point (pI)

67.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61330 AT5G61330 AT5G61330
fragaria_vesca	FvH4_7g09370 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810
malus_domestica	MD02G1217000.v1.1 MD02G1263900.v1.1 MD02G1264000.v1.1 MD07G1073400.v1.1 MD07G1101900.v1.1 MD07G1102000.v1.1 MD07G1102300.v1.1 MD07G1103300.v1.1 MD08G1040900.v1.1
prunus_persica	Prupe.2G127200_v2.0.a1 Prupe.2G127200_v2.0.a1 Prupe.2G127200_v2.0.a1 Prupe.2G127200_v2.0.a1
pyrus_communis	pycom02g17860 pycom07g05740 pycom07g05770 pycom07g08340
rosa_chinensis	RchiOBHm_Chr1g0346971
rosa_laevigata	RLG00000028767
rosa_multiflora	Rmu_co8367419.1_g000001 Rmu_sc0001731.1_g000013 Rmu_sc0002705.1_g000017 Rmu_sc0008581.1_g000020
rosa_roxburghii	Rroxscaffold_4G00308010
rosa_samantha	Rh1AG202700 Rh1BG168600 Rh1BG168700 Rh1CG187400 Rh1DG199300 Rh1DG199400
rosa_wichuraiana	Rw1G016980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	143
AluBI	AGCT	1 cut(s)	137
AluI	AGCT	1 cut(s)	137
ApeKI	GCWGC	1 cut(s)	242
Asp700I	GAANNNNTTC	2 cut(s)	87, 167
BbvI	GCAGC	1 cut(s)	254
BfaI	CTAG	3 cut(s)	11, 257, 289
BglII	AGATCT	1 cut(s)	85
BisI	GCNGC	1 cut(s)	243
BlsI	GCNGC	1 cut(s)	244
BmiI	GGNNCC	1 cut(s)	198
BpuEI	CTTGAG	2 cut(s)	157, 161
Bse1I	ACTGG	1 cut(s)	200
BseNI	ACTGG	1 cut(s)	200
BseXI	GCAGC	1 cut(s)	254
BslFI	GGGAC	1 cut(s)	143
BsmFI	GGGAC	1 cut(s)	143
BsmI	GAATGC	2 cut(s)	26, 167
Bsp143I	GATC	2 cut(s)	85, 253
BspLI	GGNNCC	1 cut(s)	198
BsrI	ACTGG	1 cut(s)	200
BssMI	GATC	2 cut(s)	85, 253
BstKTI	GATC	2 cut(s)	88, 256
BstMBI	GATC	2 cut(s)	85, 253
BstV1I	GCAGC	1 cut(s)	254
BstX2I	RGATCY	1 cut(s)	85
BstYI	RGATCY	1 cut(s)	85
BtsI	GCAGTG	1 cut(s)	111
BtsIMutI	CAGTG	2 cut(s)	111, 207
CviAII	CATG	2 cut(s)	25, 227
CviJI	RGCY	3 cut(s)	122, 137, 199
CviKI_1	RGCY	3 cut(s)	122, 137, 199
DpnI	GATC	2 cut(s)	87, 255
DpnII	GATC	2 cut(s)	85, 253
DraI	TTTAAA	1 cut(s)	57
Eco57I	CTGAAG	1 cut(s)	143
EcoT22I	ATGCAT	1 cut(s)	26
FaeI	CATG	2 cut(s)	28, 230
FaiI	YATR	5 cut(s)	26, 75, 183, 228, 247
FalI	AAGNNNNNCTT	2 cut(s)	75, 107
FaqI	GGGAC	1 cut(s)	143
FatI	CATG	2 cut(s)	24, 226
Fnu4HI	GCNGC	1 cut(s)	243
Fsp4HI	GCNGC	1 cut(s)	243
FspBI	CTAG	3 cut(s)	11, 257, 289
GluI	GCNGC	1 cut(s)	243
Hin1II	CATG	2 cut(s)	28, 230
HincII	GTYRAC	1 cut(s)	262
HindII	GTYRAC	1 cut(s)	262
HinfI	GANTC	6 cut(s)	28, 61, 150, 221, 263, 283
Hpy166II	GTNNAC	2 cut(s)	179, 262
Hpy188I	TCNGA	3 cut(s)	149, 162, 253
Hpy188III	TCNNGA	3 cut(s)	41, 140, 270
Hpy8I	GTNNAC	2 cut(s)	179, 262
Hpy99I	CGWCG	1 cut(s)	39
HpyAV	CCTTC	1 cut(s)	187
HpyCH4V	TGCA	2 cut(s)	24, 242
Hsp92II	CATG	2 cut(s)	28, 230
Kzo9I	GATC	2 cut(s)	85, 253
LmnI	GCTCC	1 cut(s)	196
LpnPI	CCDG	2 cut(s)	112, 213
Lsp1109I	GCAGC	1 cut(s)	254
MaeI	CTAG	3 cut(s)	11, 257, 289
MalI	GATC	2 cut(s)	87, 255
MboI	GATC	2 cut(s)	85, 253
MboII	GAAGA	5 cut(s)	17, 23, 80, 95, 121
MflI	RGATCY	1 cut(s)	85
MlyI	GAGTC	2 cut(s)	257, 277
MnlI	CCTC	2 cut(s)	198, 223
Mph1103I	ATGCAT	1 cut(s)	26
MroXI	GAANNNNTTC	2 cut(s)	87, 167
MseI	TTAA	2 cut(s)	56, 93
MslI	CAYNNNNRTG	1 cut(s)	231
Mva1269I	GAATGC	2 cut(s)	26, 167
NdeII	GATC	2 cut(s)	85, 253
NlaIII	CATG	2 cut(s)	28, 230
NlaIV	GGNNCC	1 cut(s)	198
NsiI	ATGCAT	1 cut(s)	26
PctI	GAATGC	2 cut(s)	26, 167
PdmI	GAANNNNTTC	2 cut(s)	87, 167
PfeI	GAWTC	4 cut(s)	28, 61, 150, 221
PkrI	GCNGC	1 cut(s)	244
PleI	GAGTC	2 cut(s)	257, 277
PpsI	GAGTC	2 cut(s)	257, 277
PspN4I	GGNNCC	1 cut(s)	198
PsuI	RGATCY	1 cut(s)	85
RseI	CAYNNNNRTG	1 cut(s)	231
SaqAI	TTAA	2 cut(s)	56, 93
SatI	GCNGC	1 cut(s)	243
Sau3AI	GATC	2 cut(s)	85, 253
SchI	GAGTC	2 cut(s)	257, 277
SetI	ASST	3 cut(s)	100, 139, 209
SmiMI	CAYNNNNRTG	1 cut(s)	231
SmlI	CTYRAG	2 cut(s)	140, 172
SmoI	CTYRAG	2 cut(s)	140, 172
SspMI	CTAG	3 cut(s)	11, 257, 289
TfiI	GAWTC	4 cut(s)	28, 61, 150, 221
Tru1I	TTAA	2 cut(s)	56, 93
Tru9I	TTAA	2 cut(s)	56, 93
TscAI	CASTG	2 cut(s)	111, 207
TseI	GCWGC	1 cut(s)	242
TspDTI	ATGAA	1 cut(s)	41
TspRI	CASTG	2 cut(s)	111, 207
XmnI	GAANNNNTTC	2 cut(s)	87, 167
XspI	CTAG	3 cut(s)	11, 257, 289
Zsp2I	ATGCAT	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.