Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0002510

Physical Location & Seq

Genomic Coordinates Reverse (-)

9369301 .. 9376249

Gene Structure 6949 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g09810.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1272 bp

ATGGGGGTGCCTTCAAAGCGGTCGAGAAAGGCGCCGGAGAGTGACAGTGATTTCGAGGACGACGGTGATTTGGATAGCCATGACCTAAATATGGAGGAAGAAGAGGATGGATTTGAGGATGAGGAGGAAGAAGATAATGAATTTGAGGATGAGGAGGAAGGAGAATCGGATGACGAAGAAGAGGAGGATGGAGAAGAGGGGGAGGAGGAAGCAAATGGTGATAAAGATGCTGAGATGGAAGAACTTGAGAAAGAAGCTATGGATATTCGTCATGAACAGCAAGACATTCTCAAGAATCTAAAGCATCACAAGGGTGAAGATATTCTTAAAGGTCAAGCACTGACGAACCAAAAGGTTATCTGGGACAAAACTCTTGAGTTCAGATTCTTGCTTCAGAAACCATTCTCAAGTTCAAATAGATTACCACAGGAACCAGTTCGGTCTCAATTCTGTGGATCACATGAGGATGTGAATGCAGCATACTCCGATCTAGTTGCATCATCAAAGAAGACTTTAAATTCTCTTCTAGAACTGCAAGAGGCTTTGGTTGAAAAGAACCCAGCTATCACACAAGATGCAACAAGTGGTAACTCTGGACGATCTAAGCATTCAGAACCATCTAAGAACATTGGTGTTGACGGTGATGAGGATTGGTCAAGAATTTCTAACTTGCTTTCAAGAATGGCTACTTTTAGAAACAAAGAAATTGACAAATGGCAAACGAGGGCACAGGTCAACACAGGTGCTGCTTCTATTAAAGGCAGACTTCAAGCTTTTAATCAGAGTATTAGTCAACAAGTTGCTGCCTACATGAGAGATCCAAGCAGAATGGTTAGGCAGATGCAGATGAGGCAATCAGCAGTTGGTGTATTTGGGACTGTTCTTAAGGGGGAGGATACTCCAAAGGGAGAGGTAATTTACGCGTATAATTCACTTAATCAAGAATTGCAATCTGATGCTGTTGCACAAGCAGATGGTGACCCTGAACTTTTGGATGATTCGGAGTTTTACCAGCAATTACTAAAAGAATTTTTTGAGACAATTGACCCAACATCTTCTGAAACAGCCTTTTATTCTCTGAAAAAGATGCAGTCTAAGAAGAGGAAGATTGTTGATAGACGAGCCTCAAAGAGTCGAAAGATAAGGTATAATGTTCATGAGAAGATTGTAAATTTCATGGCTCCCGAGCCTAGGGTTCTTCCTCCTATGTTCCCTGACCTCAATTGTTTGTTCGGATTGAAGAACTCAAAACCAGCTTCTGTAGTACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AATF-Che1 TRAUB

Protein Analysis

424

Amino Acids

48.01

Weight (kDa)

4.63

Isoelectric Point (pI)

59.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AATF-Che1	PF13339	107 - 242	7.1e-30	Apoptosis antagonizing transcription factor
TRAUB	PF08164	327 - 388	1.5e-20	Apoptosis-antagonizing transcription factor, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61330 AT5G61330 AT5G61330
fragaria_vesca	FvH4_7g09370 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810
malus_domestica	MD02G1217000.v1.1 MD02G1263900.v1.1 MD02G1264000.v1.1 MD07G1073400.v1.1 MD07G1101900.v1.1 MD07G1102000.v1.1 MD07G1102300.v1.1 MD07G1103300.v1.1 MD08G1040900.v1.1
prunus_persica	Prupe.2G127200_v2.0.a1 Prupe.2G127200_v2.0.a1 Prupe.2G127200_v2.0.a1 Prupe.2G127200_v2.0.a1
pyrus_communis	pycom02g17860 pycom07g05740 pycom07g05770 pycom07g08340
rosa_chinensis	RchiOBHm_Chr1g0346971
rosa_laevigata	RLG00000028767
rosa_multiflora	Rmu_co8367419.1_g000001 Rmu_sc0001731.1_g000013 Rmu_sc0002705.1_g000017 Rmu_sc0008581.1_g000020
rosa_roxburghii	Rroxscaffold_4G00308010
rosa_samantha	Rh1AG202700 Rh1BG168600 Rh1BG168700 Rh1CG187400 Rh1DG199300 Rh1DG199400
rosa_wichuraiana	Rw1G016980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	7, 31
AccII	CGCG	1 cut(s)	923
AciI	CCGC	1 cut(s)	19
AclWI	GGATC	2 cut(s)	463, 812
AcsI	RAATTY	5 cut(s)	140, 517, 660, 1028, 1171
AcuI	CTGAAG	1 cut(s)	377
AcyI	GRCGYC	1 cut(s)	32
AfaI	GTAC	1 cut(s)	1266
AfiI	CCNNNNNNNGG	2 cut(s)	91, 1191
AflII	CTTAAG	1 cut(s)	884
AflIII	ACRYGT	1 cut(s)	921
AgsI	TTSAA	6 cut(s)	15, 414, 551, 678, 770, 1240
AleI	CACNNNNGTG	1 cut(s)	312
AluBI	AGCT	4 cut(s)	257, 563, 773, 1256
AluI	AGCT	4 cut(s)	257, 563, 773, 1256
Alw26I	GTCTC	2 cut(s)	447, 1031
AlwI	GGATC	2 cut(s)	463, 812
AlwNI	CAGNNNCTG	2 cut(s)	746, 1259
Ama87I	CYCGRG	1 cut(s)	1184
ApeKI	GCWGC	3 cut(s)	476, 746, 803
ApoI	RAATTY	5 cut(s)	140, 517, 660, 1028, 1171
ArsI	GACNNNNNNTTYG	2 cut(s)	35, 67
Asp700I	GAANNNNTTC	3 cut(s)	321, 401, 435
AspA2I	CCTAGG	1 cut(s)	1190
AspLEI	GCGC	1 cut(s)	34
AsuHPI	GGTGA	5 cut(s)	77, 230, 326, 653, 989
AvaI	CYCGRG	1 cut(s)	1184
AvrII	CCTAGG	1 cut(s)	1190
BaeGI	GKGCMC	1 cut(s)	730
BanI	GGYRCC	2 cut(s)	7, 31
BbsI	GAAGAC	1 cut(s)	515
BbvI	GCAGC	3 cut(s)	488, 733, 790
BccI	CCATC	5 cut(s)	101, 182, 229, 625, 968
BcgI	CGANNNNNNTGC	2 cut(s)	476, 510
BciVI	GTATCC	1 cut(s)	889
BcoDI	GTCTC	2 cut(s)	447, 1031
BfaI	CTAG	3 cut(s)	491, 527, 1191
BfmI	CTRYAG	1 cut(s)	1260
BfoI	RGCGCY	1 cut(s)	35
BfrI	CTTAAG	1 cut(s)	884
BfuI	GTATCC	1 cut(s)	889
BisI	GCNGC	3 cut(s)	477, 747, 804
BlnI	CCTAGG	1 cut(s)	1190
BlsI	GCNGC	3 cut(s)	478, 748, 805
BmeT110I	CYCGRG	1 cut(s)	1184
BmiI	GGNNCC	4 cut(s)	9, 33, 432, 1182
BmsI	GCATC	7 cut(s)	217, 313, 506, 565, 831, 946, 1077
BpiI	GAAGAC	1 cut(s)	515
BpuEI	CTTGAG	4 cut(s)	266, 275, 391, 395
BsaHI	GRCGYC	1 cut(s)	32
BsaI	GGTCTC	1 cut(s)	447
BsaJI	CCNNGG	1 cut(s)	1190
Bsc4I	CCNNNNNNNGG	2 cut(s)	91, 1191
Bse1I	ACTGG	1 cut(s)	434
BseDI	CCNNGG	1 cut(s)	1190
BseGI	GGATG	7 cut(s)	112, 124, 154, 175, 193, 472, 1000
BseLI	CCNNNNNNNGG	2 cut(s)	91, 1191
BseMII	CTCAG	1 cut(s)	222
BseNI	ACTGG	1 cut(s)	434
BseRI	GAGGAG	4 cut(s)	137, 167, 197, 218
BseSI	GKGCMC	1 cut(s)	730
BseXI	GCAGC	3 cut(s)	488, 733, 790
BseYI	CCCAGC	1 cut(s)	559
Bsh1236I	CGCG	1 cut(s)	923
Bsh1285I	CGRYCG	1 cut(s)	23
BshNI	GGYRCC	2 cut(s)	7, 31
BsiEI	CGRYCG	1 cut(s)	23
BsiHKCI	CYCGRG	1 cut(s)	1184
BsiSI	CCGG	1 cut(s)	35
BslFI	GGGAC	2 cut(s)	377, 889
BslI	CCNNNNNNNGG	2 cut(s)	91, 1191
BsmAI	GTCTC	2 cut(s)	447, 1031
BsmFI	GGGAC	2 cut(s)	377, 889
BsmI	GAATGC	2 cut(s)	478, 607
Bso31I	GGTCTC	1 cut(s)	447
BsoBI	CYCGRG	1 cut(s)	1184
Bsp1286I	GDGCHC	1 cut(s)	730
Bsp143I	GATC	4 cut(s)	455, 487, 599, 817
BspACI	CCGC	1 cut(s)	19
BspCNI	CTCAG	1 cut(s)	223
BspFNI	CGCG	1 cut(s)	923
BspHI	TCATGA	2 cut(s)	271, 1156
BspLI	GGNNCC	4 cut(s)	9, 33, 432, 1182
BspPI	GGATC	2 cut(s)	463, 812
BspT107I	GGYRCC	2 cut(s)	7, 31
BspTI	CTTAAG	1 cut(s)	884
BspTNI	GGTCTC	1 cut(s)	447
BsrI	ACTGG	1 cut(s)	434
BssECI	CCNNGG	1 cut(s)	1190
BssMI	GATC	4 cut(s)	455, 487, 599, 817
BssNI	GRCGYC	1 cut(s)	32
BssT1I	CCWWGG	1 cut(s)	1190
Bst4CI	ACNGT	5 cut(s)	47, 65, 641, 880, 1269
Bst6I	CTCTTC	5 cut(s)	96, 174, 189, 528, 1094
BstACI	GRCGYC	1 cut(s)	32
BstAFI	CTTAAG	1 cut(s)	884
BstDEI	CTNAG	4 cut(s)	231, 603, 621, 1095
BstEII	GGTNACC	1 cut(s)	977
BstF5I	GGATG	7 cut(s)	112, 124, 154, 175, 193, 472, 1000
BstFNI	CGCG	1 cut(s)	923
BstH2I	RGCGCY	1 cut(s)	35
BstHHI	GCGC	1 cut(s)	34
BstKTI	GATC	4 cut(s)	458, 490, 602, 820
BstMAI	GTCTC	2 cut(s)	447, 1031
BstMBI	GATC	4 cut(s)	455, 487, 599, 817
BstMCI	CGRYCG	1 cut(s)	23
BstMWI	GCNNNNNNNGC	2 cut(s)	16, 850
BstPI	GGTNACC	1 cut(s)	977
BstSFI	CTRYAG	1 cut(s)	1260
BstSLI	GKGCMC	1 cut(s)	730
BstUI	CGCG	1 cut(s)	923
BstV1I	GCAGC	3 cut(s)	488, 733, 790
BstV2I	GAAGAC	1 cut(s)	515
BstX2I	RGATCY	1 cut(s)	817
BstYI	RGATCY	1 cut(s)	817
BsuI	GTATCC	1 cut(s)	889
BtsCI	GGATG	7 cut(s)	112, 124, 154, 175, 193, 472, 1000
BtsIMutI	CAGTG	2 cut(s)	52, 338
CaiI	CAGNNNCTG	2 cut(s)	746, 1259
CciI	TCATGA	2 cut(s)	271, 1156
CfoI	GCGC	1 cut(s)	34
Csp6I	GTAC	1 cut(s)	1265
CviAII	CATG	6 cut(s)	80, 272, 461, 811, 1157, 1177
CviQI	GTAC	1 cut(s)	1265
DdeI	CTNAG	4 cut(s)	231, 603, 621, 1095
DinI	GGCGCC	1 cut(s)	33
DpnI	GATC	4 cut(s)	457, 489, 601, 819
DpnII	GATC	4 cut(s)	455, 487, 599, 817
DraI	TTTAAA	1 cut(s)	516
Eam1104I	CTCTTC	5 cut(s)	96, 174, 189, 528, 1094
EarI	CTCTTC	5 cut(s)	96, 174, 189, 528, 1094
Eco130I	CCWWGG	1 cut(s)	1190
Eco31I	GGTCTC	1 cut(s)	447
Eco57I	CTGAAG	1 cut(s)	377
Eco88I	CYCGRG	1 cut(s)	1184
Eco91I	GGTNACC	1 cut(s)	977
EcoO65I	GGTNACC	1 cut(s)	977
EcoT14I	CCWWGG	1 cut(s)	1190
EgeI	GGCGCC	1 cut(s)	33
EheI	GGCGCC	1 cut(s)	33
ErhI	CCWWGG	1 cut(s)	1190
FaeI	CATG	6 cut(s)	83, 275, 464, 814, 1160, 1180
FalI	AAGNNNNNCTT	4 cut(s)	309, 341, 750, 782
FaqI	GGGAC	2 cut(s)	377, 889
FatI	CATG	6 cut(s)	79, 271, 460, 810, 1156, 1176
Fnu4HI	GCNGC	3 cut(s)	477, 747, 804
FokI	GGATG	7 cut(s)	119, 131, 161, 182, 200, 479, 1007
Fsp4HI	GCNGC	3 cut(s)	477, 747, 804
FspBI	CTAG	3 cut(s)	491, 527, 1191
GlaI	GCGC	1 cut(s)	33
GluI	GCNGC	3 cut(s)	477, 747, 804
GsaI	CCCAGC	1 cut(s)	563
HaeII	RGCGCY	1 cut(s)	35
HapII	CCGG	1 cut(s)	35
HhaI	GCGC	1 cut(s)	34
Hin1I	GRCGYC	1 cut(s)	32
Hin1II	CATG	6 cut(s)	83, 275, 464, 814, 1160, 1180
Hin6I	GCGC	1 cut(s)	32
HinP1I	GCGC	1 cut(s)	32
HincII	GTYRAC	3 cut(s)	637, 736, 794
HindII	GTYRAC	3 cut(s)	637, 736, 794
HindIII	AAGCTT	1 cut(s)	771
HinfI	GANTC	5 cut(s)	164, 295, 384, 998, 1132
HpaII	CCGG	1 cut(s)	35
HphI	GGTGA	5 cut(s)	77, 230, 326, 653, 989
Hpy166II	GTNNAC	3 cut(s)	637, 736, 794
Hpy8I	GTNNAC	3 cut(s)	637, 736, 794
Hpy99I	CGWCG	1 cut(s)	65
HpyAV	CCTTC	2 cut(s)	21, 152
HpyCH4III	ACNGT	5 cut(s)	47, 65, 641, 880, 1269
HpyCH4V	TGCA	8 cut(s)	476, 497, 535, 578, 844, 949, 965, 1090
HpyF10VI	GCNNNNNNNGC	2 cut(s)	16, 850
HpyF3I	CTNAG	4 cut(s)	231, 603, 621, 1095
Hsp92I	GRCGYC	1 cut(s)	32
Hsp92II	CATG	6 cut(s)	83, 275, 464, 814, 1160, 1180
HspAI	GCGC	1 cut(s)	32
KasI	GGCGCC	1 cut(s)	31
Kzo9I	GATC	4 cut(s)	455, 487, 599, 817
LmnI	GCTCC	1 cut(s)	1186
Lsp1109I	GCAGC	3 cut(s)	488, 733, 790
LweI	GCATC	7 cut(s)	217, 313, 506, 565, 831, 946, 1077
MaeI	CTAG	3 cut(s)	491, 527, 1191
MaeIII	GTNAC	3 cut(s)	41, 587, 977
MalI	GATC	4 cut(s)	457, 489, 601, 819
MboI	GATC	4 cut(s)	455, 487, 599, 817
MfeI	CAATTG	2 cut(s)	1041, 1222
MflI	RGATCY	1 cut(s)	817
MhlI	GDGCHC	1 cut(s)	730
MluI	ACGCGT	1 cut(s)	921
Mly113I	GGCGCC	1 cut(s)	32
MlyI	GAGTC	1 cut(s)	1141
MroXI	GAANNNNTTC	3 cut(s)	321, 401, 435
MseI	TTAA	6 cut(s)	327, 515, 756, 777, 885, 936
MslI	CAYNNNNRTG	2 cut(s)	312, 465
MspCI	CTTAAG	1 cut(s)	884
MspI	CCGG	1 cut(s)	35
MunI	CAATTG	2 cut(s)	1041, 1222
Mva1269I	GAATGC	2 cut(s)	478, 607
MvnI	CGCG	1 cut(s)	923
MwoI	GCNNNNNNNGC	2 cut(s)	16, 850
NarI	GGCGCC	1 cut(s)	32
NdeII	GATC	4 cut(s)	455, 487, 599, 817
NlaIII	CATG	6 cut(s)	83, 275, 464, 814, 1160, 1180
NlaIV	GGNNCC	4 cut(s)	9, 33, 432, 1182
NmuCI	GTSAC	2 cut(s)	41, 977
OliI	CACNNNNGTG	1 cut(s)	312
PagI	TCATGA	2 cut(s)	271, 1156
PctI	GAATGC	2 cut(s)	478, 607
PdmI	GAANNNNTTC	3 cut(s)	321, 401, 435
PfeI	GAWTC	4 cut(s)	164, 295, 384, 998
PkrI	GCNGC	3 cut(s)	478, 748, 805
PleI	GAGTC	1 cut(s)	1140
PluTI	GGCGCC	1 cut(s)	35
PpsI	GAGTC	1 cut(s)	1140
PspEI	GGTNACC	1 cut(s)	977
PspFI	CCCAGC	1 cut(s)	559
PspN4I	GGNNCC	4 cut(s)	9, 33, 432, 1182
PstNI	CAGNNNCTG	2 cut(s)	746, 1259
PsuI	RGATCY	1 cut(s)	817
RsaI	GTAC	1 cut(s)	1266
RsaNI	GTAC	1 cut(s)	1265
RseI	CAYNNNNRTG	2 cut(s)	312, 465
SaqAI	TTAA	6 cut(s)	327, 515, 756, 777, 885, 936
SatI	GCNGC	3 cut(s)	477, 747, 804
Sau3AI	GATC	4 cut(s)	455, 487, 599, 817
SchI	GAGTC	1 cut(s)	1141
SduI	GDGCHC	1 cut(s)	730
SfaNI	GCATC	7 cut(s)	217, 313, 506, 565, 831, 946, 1077
SfcI	CTRYAG	1 cut(s)	1260
SfoI	GGCGCC	1 cut(s)	33
SmiMI	CAYNNNNRTG	2 cut(s)	312, 465
SmlI	CTYRAG	5 cut(s)	245, 290, 374, 406, 884
SmoI	CTYRAG	5 cut(s)	245, 290, 374, 406, 884
SsiI	CCGC	1 cut(s)	19
SspDI	GGCGCC	1 cut(s)	31
SspMI	CTAG	3 cut(s)	491, 527, 1191
StyI	CCWWGG	1 cut(s)	1190
TaaI	ACNGT	5 cut(s)	47, 65, 641, 880, 1269
TaqI	TCGA	3 cut(s)	23, 54, 1135
TaqII	GACCGA	1 cut(s)	429
TatI	WGTACW	1 cut(s)	1264
TfiI	GAWTC	4 cut(s)	164, 295, 384, 998
Tru1I	TTAA	6 cut(s)	327, 515, 756, 777, 885, 936
Tru9I	TTAA	6 cut(s)	327, 515, 756, 777, 885, 936
TscAI	CASTG	2 cut(s)	52, 345
TseFI	GTSAC	2 cut(s)	41, 977
TseI	GCWGC	3 cut(s)	476, 746, 803
Tsp45I	GTSAC	2 cut(s)	41, 977
TspDTI	ATGAA	4 cut(s)	153, 288, 1145, 1165
TspRI	CASTG	2 cut(s)	52, 345
Vha464I	CTTAAG	1 cut(s)	884
XapI	RAATTY	5 cut(s)	140, 517, 660, 1028, 1171
XbaI	TCTAGA	1 cut(s)	526
XmaJI	CCTAGG	1 cut(s)	1190
XmnI	GAANNNNTTC	3 cut(s)	321, 401, 435
XspI	CTAG	3 cut(s)	491, 527, 1191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.