Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0002510

Physical Location & Seq

Genomic Coordinates Forward (+)

31796582 .. 31798370

Gene Structure 1789 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1263900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGCTGAAGGTAAATCTGGACAATCTAAGAAGTCAGAGTCATCTAAGATCATTGACAGTGATGGTGATGAGGATTGGTCACAGATTTCTCAGTTGCTGTCGAGCTACTTTCAGAGACAAATCCATCAACAAATGGCAGAGGAAGACAGAGGTGACCACAGGCGCTGCTGCTATTAAAAGCAAACTGCATGCTTTTAATCAGAATGTTAGTGAACAAGTTGCTTCTTATATGAGAGATCCAAGCAGAGTGGTTAGGCAGATGCAGATGAGGAAATCAGTAGTTTCTGTATTTGGCACTGTTCCTGAGGAGAAAAATACTGCAAAGGGGGAGGGGACACAATCCAAAGCTGGTGCACAAGCTGACGGTGACCCTGAACTTTTAGATGACTCTGAGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AATF-Che1 TRAUB

Protein Analysis

133

Amino Acids

14.82

Weight (kDa)

9.79

Isoelectric Point (pI)

40.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61330 AT5G61330 AT5G61330
fragaria_vesca	FvH4_7g09370 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810
malus_domestica	MD02G1217000.v1.1 MD02G1263900.v1.1 MD02G1264000.v1.1 MD07G1073400.v1.1 MD07G1101900.v1.1 MD07G1102000.v1.1 MD07G1102300.v1.1 MD07G1103300.v1.1 MD08G1040900.v1.1
prunus_persica	Prupe.2G127200_v2.0.a1 Prupe.2G127200_v2.0.a1 Prupe.2G127200_v2.0.a1 Prupe.2G127200_v2.0.a1
pyrus_communis	pycom02g17860 pycom07g05740 pycom07g05770 pycom07g08340
rosa_chinensis	RchiOBHm_Chr1g0346971
rosa_laevigata	RLG00000028767
rosa_multiflora	Rmu_co8367419.1_g000001 Rmu_sc0001731.1_g000013 Rmu_sc0002705.1_g000017 Rmu_sc0008581.1_g000020
rosa_roxburghii	Rroxscaffold_4G00308010
rosa_samantha	Rh1AG202700 Rh1BG168600 Rh1BG168700 Rh1CG187400 Rh1DG199300 Rh1DG199400
rosa_wichuraiana	Rw1G016980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	230
AcuI	CTGAAG	1 cut(s)	26
AluBI	AGCT	3 cut(s)	104, 347, 359
AluI	AGCT	3 cut(s)	104, 347, 359
Alw21I	GWGCWC	1 cut(s)	355
Alw26I	GTCTC	1 cut(s)	108
Alw44I	GTGCAC	1 cut(s)	351
AlwI	GGATC	1 cut(s)	230
AlwNI	CAGNNNCTG	2 cut(s)	96, 164
ApaLI	GTGCAC	1 cut(s)	351
ApeKI	GCWGC	2 cut(s)	164, 167
AspLEI	GCGC	1 cut(s)	164
AsuHPI	GGTGA	3 cut(s)	76, 163, 377
AxyI	CCTNAGG	1 cut(s)	303
BaeGI	GKGCMC	1 cut(s)	355
BbsI	GAAGAC	1 cut(s)	149
Bbv12I	GWGCWC	1 cut(s)	355
BbvI	GCAGC	2 cut(s)	151, 154
BccI	CCATC	2 cut(s)	55, 131
BcoDI	GTCTC	1 cut(s)	108
BfoI	RGCGCY	1 cut(s)	165
BisI	GCNGC	2 cut(s)	165, 168
BlsI	GCNGC	2 cut(s)	166, 169
BmsI	GCATC	1 cut(s)	249
BpiI	GAAGAC	1 cut(s)	149
Bse21I	CCTNAGG	1 cut(s)	303
BseMII	CTCAG	3 cut(s)	103, 294, 381
BseRI	GAGGAG	1 cut(s)	320
BseSI	GKGCMC	1 cut(s)	355
BseXI	GCAGC	2 cut(s)	151, 154
BsiHKAI	GWGCWC	1 cut(s)	355
BslFI	GGGAC	1 cut(s)	346
BsmAI	GTCTC	1 cut(s)	108
BsmFI	GGGAC	1 cut(s)	346
Bsp1286I	GDGCHC	1 cut(s)	355
Bsp143I	GATC	2 cut(s)	47, 235
BspCNI	CTCAG	3 cut(s)	102, 295, 382
BspPI	GGATC	1 cut(s)	230
BssMI	GATC	2 cut(s)	47, 235
Bst4CI	ACNGT	3 cut(s)	58, 298, 365
BstC8I	GCNNGC	1 cut(s)	189
BstDEI	CTNAG	5 cut(s)	26, 44, 89, 303, 390
BstEII	GGTNACC	2 cut(s)	151, 365
BstH2I	RGCGCY	1 cut(s)	165
BstHHI	GCGC	1 cut(s)	164
BstKTI	GATC	2 cut(s)	50, 238
BstMAI	GTCTC	1 cut(s)	108
BstMBI	GATC	2 cut(s)	47, 235
BstNSI	RCATGY	1 cut(s)	191
BstPI	GGTNACC	2 cut(s)	151, 365
BstSLI	GKGCMC	1 cut(s)	355
BstV1I	GCAGC	2 cut(s)	151, 154
BstV2I	GAAGAC	1 cut(s)	149
BstX2I	RGATCY	1 cut(s)	235
BstYI	RGATCY	1 cut(s)	235
Bsu36I	CCTNAGG	1 cut(s)	303
BtsIMutI	CAGTG	2 cut(s)	63, 294
Cac8I	GCNNGC	1 cut(s)	189
CaiI	CAGNNNCTG	2 cut(s)	96, 164
CfoI	GCGC	1 cut(s)	164
CspCI	CAANNNNNGTGG	2 cut(s)	228, 263
CviAII	CATG	1 cut(s)	188
CviJI	RGCY	3 cut(s)	104, 347, 359
CviKI_1	RGCY	3 cut(s)	104, 347, 359
DdeI	CTNAG	5 cut(s)	26, 44, 89, 303, 390
DpnI	GATC	2 cut(s)	49, 237
DpnII	GATC	2 cut(s)	47, 235
Eco57I	CTGAAG	1 cut(s)	26
Eco81I	CCTNAGG	1 cut(s)	303
Eco91I	GGTNACC	2 cut(s)	151, 365
EcoO65I	GGTNACC	2 cut(s)	151, 365
FaeI	CATG	1 cut(s)	191
FaiI	YATR	3 cut(s)	189, 228, 230
FaqI	GGGAC	1 cut(s)	346
FatI	CATG	1 cut(s)	187
Fnu4HI	GCNGC	2 cut(s)	165, 168
Fsp4HI	GCNGC	2 cut(s)	165, 168
GlaI	GCGC	1 cut(s)	163
GluI	GCNGC	2 cut(s)	165, 168
HaeII	RGCGCY	1 cut(s)	165
HhaI	GCGC	1 cut(s)	164
Hin1II	CATG	1 cut(s)	191
Hin6I	GCGC	1 cut(s)	162
HinP1I	GCGC	1 cut(s)	162
HinfI	GANTC	2 cut(s)	37, 386
HphI	GGTGA	3 cut(s)	76, 163, 377
Hpy166II	GTNNAC	2 cut(s)	212, 353
Hpy188I	TCNGA	4 cut(s)	36, 113, 201, 391
Hpy188III	TCNNGA	2 cut(s)	17, 302
Hpy8I	GTNNAC	2 cut(s)	212, 353
HpyCH4III	ACNGT	3 cut(s)	58, 298, 365
HpyCH4V	TGCA	4 cut(s)	187, 262, 320, 353
HpyF3I	CTNAG	5 cut(s)	26, 44, 89, 303, 390
Hsp92II	CATG	1 cut(s)	191
HspAI	GCGC	1 cut(s)	162
Kzo9I	GATC	2 cut(s)	47, 235
LpnPI	CCDG	5 cut(s)	2, 144, 315, 333, 384
Lsp1109I	GCAGC	2 cut(s)	151, 154
LweI	GCATC	1 cut(s)	249
MaeIII	GTNAC	3 cut(s)	77, 151, 365
MalI	GATC	2 cut(s)	49, 237
MboI	GATC	2 cut(s)	47, 235
MboII	GAAGA	1 cut(s)	154
MflI	RGATCY	1 cut(s)	235
MhlI	GDGCHC	1 cut(s)	355
MlyI	GAGTC	2 cut(s)	46, 380
MnlI	CCTC	6 cut(s)	63, 132, 142, 261, 298, 322
MseI	TTAA	2 cut(s)	174, 195
NdeII	GATC	2 cut(s)	47, 235
NlaIII	CATG	1 cut(s)	191
NmuCI	GTSAC	3 cut(s)	77, 151, 365
NspI	RCATGY	1 cut(s)	191
PaeI	GCATGC	1 cut(s)	191
PkrI	GCNGC	2 cut(s)	166, 169
PleI	GAGTC	2 cut(s)	45, 380
PpsI	GAGTC	2 cut(s)	45, 380
PspEI	GGTNACC	2 cut(s)	151, 365
PstNI	CAGNNNCTG	2 cut(s)	96, 164
PsuI	RGATCY	1 cut(s)	235
SaqAI	TTAA	2 cut(s)	174, 195
SatI	GCNGC	2 cut(s)	165, 168
Sau3AI	GATC	2 cut(s)	47, 235
SchI	GAGTC	2 cut(s)	46, 380
SduI	GDGCHC	1 cut(s)	355
SetI	ASST	5 cut(s)	12, 106, 153, 349, 361
SfaNI	GCATC	1 cut(s)	249
SphI	GCATGC	1 cut(s)	191
TaaI	ACNGT	3 cut(s)	58, 298, 365
TaqI	TCGA	1 cut(s)	100
Tru1I	TTAA	2 cut(s)	174, 195
Tru9I	TTAA	2 cut(s)	174, 195
TscAI	CASTG	2 cut(s)	63, 301
TseFI	GTSAC	3 cut(s)	77, 151, 365
TseI	GCWGC	2 cut(s)	164, 167
Tsp45I	GTSAC	3 cut(s)	77, 151, 365
TspRI	CASTG	2 cut(s)	63, 301
VneI	GTGCAC	1 cut(s)	351
XceI	RCATGY	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.