Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0002510

Physical Location & Seq

Genomic Coordinates Reverse (-)

3026924 .. 3029775

Gene Structure 2852 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1040900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGCTGATGGATATTATTGGCCGGAGCATGAACATGTCAAGTTCTTTGGGTTCTTGCAAGGTGAAGCTGAGTCTGGGTTGGAACGGCCTCATCAATGTGCAGAAAATGAGCCACAAGTTTACCTCAATGGTAAATCTGGACGATCTAAGATGTCACAGTCATCTAAAAACATTGGCAGTGATGGTGATGGTGATGAGGATTGGTCATGAATTTCTGAGTTGCTGTCGAGAATGCTACTTTCAGAAACAAATTGATAAACAAATGGCAGAGGAAGACAGAGTACTTTTATTCCTTCACTCTGATAAGACACAATCTGATGCTGGTGCAAAAGCTGATGGTGACCCCTTGGATGACTCTGAGTTTTACCAGCAATTTCTAAAAGAATGTTTTGAGACAATTGACCCAGCAACTTTTGGTAAAACTATTGGGCATCTCATACTTCATATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AATF-Che1 TRAUB

Protein Analysis

150

Amino Acids

16.94

Weight (kDa)

6.13

Isoelectric Point (pI)

55.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61330 AT5G61330 AT5G61330
fragaria_vesca	FvH4_7g09370 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810
malus_domestica	MD02G1217000.v1.1 MD02G1263900.v1.1 MD02G1264000.v1.1 MD07G1073400.v1.1 MD07G1101900.v1.1 MD07G1102000.v1.1 MD07G1102300.v1.1 MD07G1103300.v1.1 MD08G1040900.v1.1
prunus_persica	Prupe.2G127200_v2.0.a1 Prupe.2G127200_v2.0.a1 Prupe.2G127200_v2.0.a1 Prupe.2G127200_v2.0.a1
pyrus_communis	pycom02g17860 pycom07g05740 pycom07g05770 pycom07g08340
rosa_chinensis	RchiOBHm_Chr1g0346971
rosa_laevigata	RLG00000028767
rosa_multiflora	Rmu_co8367419.1_g000001 Rmu_sc0001731.1_g000013 Rmu_sc0002705.1_g000017 Rmu_sc0008581.1_g000020
rosa_roxburghii	Rroxscaffold_4G00308010
rosa_samantha	Rh1AG202700 Rh1BG168600 Rh1BG168700 Rh1CG187400 Rh1DG199300 Rh1DG199400
rosa_wichuraiana	Rw1G016980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	19
AcsI	RAATTY	1 cut(s)	209
AfaI	GTAC	1 cut(s)	282
AflIII	ACRYGT	1 cut(s)	33
AluBI	AGCT	2 cut(s)	67, 332
AluI	AGCT	2 cut(s)	67, 332
Alw26I	GTCTC	1 cut(s)	386
AoxI	GGCC	2 cut(s)	19, 85
ApoI	RAATTY	1 cut(s)	209
AsuHPI	GGTGA	4 cut(s)	73, 196, 202, 350
BarI	GAAGNNNNNNTAC	2 cut(s)	264, 296
BbsI	GAAGAC	1 cut(s)	279
BccI	CCATC	3 cut(s)	175, 181, 329
BceAI	ACGGC	1 cut(s)	100
BcoDI	GTCTC	1 cut(s)	386
BmcAI	AGTACT	1 cut(s)	282
BmsI	GCATC	2 cut(s)	307, 439
BpiI	GAAGAC	1 cut(s)	279
BsaJI	CCNNGG	1 cut(s)	345
BseDI	CCNNGG	1 cut(s)	345
BseGI	GGATG	1 cut(s)	355
BseMII	CTCAG	3 cut(s)	59, 206, 348
BseYI	CCCAGC	1 cut(s)	403
BsgI	GTGCAG	1 cut(s)	119
BshFI	GGCC	2 cut(s)	21, 87
BsiSI	CCGG	1 cut(s)	22
BsmAI	GTCTC	1 cut(s)	386
BsmI	GAATGC	1 cut(s)	236
BsnI	GGCC	2 cut(s)	21, 87
Bsp143I	GATC	1 cut(s)	142
BspANI	GGCC	2 cut(s)	21, 87
BspCNI	CTCAG	3 cut(s)	60, 207, 349
BspHI	TCATGA	1 cut(s)	205
BssECI	CCNNGG	1 cut(s)	345
BssMI	GATC	1 cut(s)	142
BssT1I	CCWWGG	1 cut(s)	345
Bst4CI	ACNGT	1 cut(s)	158
BstDEI	CTNAG	4 cut(s)	68, 146, 215, 357
BstEII	GGTNACC	1 cut(s)	338
BstF5I	GGATG	1 cut(s)	355
BstKTI	GATC	1 cut(s)	145
BstMAI	GTCTC	1 cut(s)	386
BstMBI	GATC	1 cut(s)	142
BstNSI	RCATGY	1 cut(s)	37
BstPI	GGTNACC	1 cut(s)	338
BstV2I	GAAGAC	1 cut(s)	279
BsuRI	GGCC	2 cut(s)	21, 87
BtsCI	GGATG	1 cut(s)	355
BtsI	GCAGTG	1 cut(s)	183
BtsIMutI	CAGTG	1 cut(s)	183
CciI	TCATGA	1 cut(s)	205
Csp6I	GTAC	1 cut(s)	281
CviAII	CATG	3 cut(s)	28, 34, 206
CviJI	RGCY	5 cut(s)	21, 67, 87, 111, 332
CviKI_1	RGCY	5 cut(s)	21, 67, 87, 111, 332
CviQI	GTAC	1 cut(s)	281
DdeI	CTNAG	4 cut(s)	68, 146, 215, 357
DpnI	GATC	1 cut(s)	144
DpnII	GATC	1 cut(s)	142
EaeI	YGGCCR	1 cut(s)	19
Eco130I	CCWWGG	1 cut(s)	345
Eco91I	GGTNACC	1 cut(s)	338
EcoO65I	GGTNACC	1 cut(s)	338
EcoT14I	CCWWGG	1 cut(s)	345
ErhI	CCWWGG	1 cut(s)	345
FaeI	CATG	3 cut(s)	31, 37, 209
FaiI	YATR	7 cut(s)	29, 35, 207, 437, 444, 446, 448
FatI	CATG	3 cut(s)	27, 33, 205
FokI	GGATG	1 cut(s)	362
GsaI	CCCAGC	1 cut(s)	407
HaeIII	GGCC	2 cut(s)	21, 87
HapII	CCGG	1 cut(s)	22
Hin1II	CATG	3 cut(s)	31, 37, 209
HinfI	GANTC	2 cut(s)	70, 353
HpaII	CCGG	1 cut(s)	22
HphI	GGTGA	4 cut(s)	73, 196, 202, 350
Hpy166II	GTNNAC	1 cut(s)	120
Hpy188I	TCNGA	5 cut(s)	216, 243, 301, 316, 358
Hpy188III	TCNNGA	3 cut(s)	137, 206, 227
Hpy8I	GTNNAC	1 cut(s)	120
HpyAV	CCTTC	1 cut(s)	302
HpyCH4III	ACNGT	1 cut(s)	158
HpyCH4V	TGCA	3 cut(s)	57, 100, 326
HpyF3I	CTNAG	4 cut(s)	68, 146, 215, 357
Hsp92II	CATG	3 cut(s)	31, 37, 209
Kzo9I	GATC	1 cut(s)	142
LmnI	GCTCC	1 cut(s)	24
LpnPI	CCDG	6 cut(s)	35, 59, 122, 306, 380, 417
LweI	GCATC	2 cut(s)	307, 439
MaeIII	GTNAC	2 cut(s)	152, 338
MalI	GATC	1 cut(s)	144
MboI	GATC	1 cut(s)	142
MboII	GAAGA	1 cut(s)	284
MfeI	CAATTG	1 cut(s)	396
MluCI	AATT	4 cut(s)	209, 249, 371, 396
MlyI	GAGTC	2 cut(s)	79, 347
MmeI	TCCRAC	1 cut(s)	59
MnlI	CCTC	4 cut(s)	98, 133, 189, 262
MslI	CAYNNNNRTG	2 cut(s)	32, 95
MspI	CCGG	1 cut(s)	22
MunI	CAATTG	1 cut(s)	396
Mva1269I	GAATGC	1 cut(s)	236
NdeII	GATC	1 cut(s)	142
NlaIII	CATG	3 cut(s)	31, 37, 209
NmuCI	GTSAC	2 cut(s)	152, 338
NspI	RCATGY	1 cut(s)	37
PagI	TCATGA	1 cut(s)	205
PciI	ACATGT	1 cut(s)	33
PctI	GAATGC	1 cut(s)	236
PleI	GAGTC	2 cut(s)	78, 347
PpsI	GAGTC	2 cut(s)	78, 347
PscI	ACATGT	1 cut(s)	33
PspEI	GGTNACC	1 cut(s)	338
PspFI	CCCAGC	1 cut(s)	403
RsaI	GTAC	1 cut(s)	282
RsaNI	GTAC	1 cut(s)	281
RseI	CAYNNNNRTG	2 cut(s)	32, 95
Sau3AI	GATC	1 cut(s)	142
ScaI	AGTACT	1 cut(s)	282
SchI	GAGTC	2 cut(s)	79, 347
SetI	ASST	4 cut(s)	63, 69, 125, 334
SfaNI	GCATC	2 cut(s)	307, 439
SmiMI	CAYNNNNRTG	2 cut(s)	32, 95
Sse9I	AATT	4 cut(s)	209, 249, 371, 396
StyI	CCWWGG	1 cut(s)	345
TaaI	ACNGT	1 cut(s)	158
TaqI	TCGA	1 cut(s)	226
TasI	AATT	4 cut(s)	209, 249, 371, 396
TatI	WGTACW	1 cut(s)	280
TscAI	CASTG	1 cut(s)	183
TseFI	GTSAC	2 cut(s)	152, 338
Tsp45I	GTSAC	2 cut(s)	152, 338
TspDTI	ATGAA	3 cut(s)	44, 222, 431
TspRI	CASTG	1 cut(s)	183
XapI	RAATTY	1 cut(s)	209
XceI	RCATGY	1 cut(s)	37
ZrmI	AGTACT	1 cut(s)	282

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.