Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0002510

Physical Location & Seq

Genomic Coordinates Reverse (-)

11476957 .. 11480633

Gene Structure 3677 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1102300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGCCAATCCTTAAATTGAAAAAAATGATTTATATAGTGAATTATTGTCTGATTGATGTTCATTCTTACCCGTTTTCTATGCCTTTTGTTTTCATTTTTCTGAAGGCTCTCTGGGACAAAGCTCTTGAGTTCAGATTCTTGCTTCAGAAAGCATTCTCAAGTTCACATAGATTACCACAGGTTCTTGAGGGGTACAACACTGCAAAGAGAGAGGAGACACAATCTGATGCTGGTGCACACGCTGATGGTGACCCCGAACTTTTGGATGACTCTGAGTTTTACCAACAATTACTGAAAGAATTTTTTGGGACAATTGACCCAGCAACTTCTGTGATTTTGTTTTGGAATATCTTGGAGCATCTGTATAATGTTTATGAGAAGATAGTAAATTTCATGGCTCCAGAGACCATGGCCGTTTCTCCTATGCTTCCTGACCTCAATAATTTGTTCGGGTTGAAGAAGCAGAAACCAGCTTCCGCAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AATF-Che1 TRAUB

Protein Analysis

162

Amino Acids

18.56

Weight (kDa)

5.53

Isoelectric Point (pI)

49.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AATF-Che1	PF13339	35 - 74	4.4e-06	Apoptosis antagonizing transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61330 AT5G61330 AT5G61330
fragaria_vesca	FvH4_7g09370 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810
malus_domestica	MD02G1217000.v1.1 MD02G1263900.v1.1 MD02G1264000.v1.1 MD07G1073400.v1.1 MD07G1101900.v1.1 MD07G1102000.v1.1 MD07G1102300.v1.1 MD07G1103300.v1.1 MD08G1040900.v1.1
prunus_persica	Prupe.2G127200_v2.0.a1 Prupe.2G127200_v2.0.a1 Prupe.2G127200_v2.0.a1 Prupe.2G127200_v2.0.a1
pyrus_communis	pycom02g17860 pycom07g05740 pycom07g05770 pycom07g08340
rosa_chinensis	RchiOBHm_Chr1g0346971
rosa_laevigata	RLG00000028767
rosa_multiflora	Rmu_co8367419.1_g000001 Rmu_sc0001731.1_g000013 Rmu_sc0002705.1_g000017 Rmu_sc0008581.1_g000020
rosa_roxburghii	Rroxscaffold_4G00308010
rosa_samantha	Rh1AG202700 Rh1BG168600 Rh1BG168700 Rh1CG187400 Rh1DG199300 Rh1DG199400
rosa_wichuraiana	Rw1G016980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	477
AcoI	YGGCCR	1 cut(s)	411
AcsI	RAATTY	2 cut(s)	299, 388
AcuI	CTGAAG	2 cut(s)	122, 128
AfaI	GTAC	1 cut(s)	194
AgsI	TTSAA	2 cut(s)	19, 457
AluBI	AGCT	2 cut(s)	122, 473
AluI	AGCT	2 cut(s)	122, 473
Alw21I	GWGCWC	1 cut(s)	238
Alw26I	GTCTC	2 cut(s)	209, 398
Alw44I	GTGCAC	1 cut(s)	234
AoxI	GGCC	1 cut(s)	411
ApaLI	GTGCAC	1 cut(s)	234
ApoI	RAATTY	2 cut(s)	299, 388
Asp700I	GAANNNNTTC	1 cut(s)	152
AsuHPI	GGTGA	1 cut(s)	260
BaeGI	GKGCMC	1 cut(s)	238
Bbv12I	GWGCWC	1 cut(s)	238
BccI	CCATC	1 cut(s)	239
BceAI	ACGGC	1 cut(s)	398
BcoDI	GTCTC	2 cut(s)	209, 398
BmiI	GGNNCC	1 cut(s)	399
BmsI	GCATC	2 cut(s)	217, 367
BpmI	CTGGAG	1 cut(s)	384
BpuEI	CTTGAG	3 cut(s)	142, 146, 206
BsaI	GGTCTC	1 cut(s)	398
BsaJI	CCNNGG	1 cut(s)	408
BsaXI	ACNNNNNCTCC	2 cut(s)	347, 377
BseDI	CCNNGG	1 cut(s)	408
BseGI	GGATG	1 cut(s)	271
BseMII	CTCAG	1 cut(s)	264
BseRI	GAGGAG	1 cut(s)	227
BseSI	GKGCMC	1 cut(s)	238
BseYI	CCCAGC	1 cut(s)	319
BshFI	GGCC	1 cut(s)	413
BsiHKAI	GWGCWC	1 cut(s)	238
BslFI	GGGAC	2 cut(s)	128, 322
BsmAI	GTCTC	2 cut(s)	209, 398
BsmFI	GGGAC	2 cut(s)	128, 322
BsmI	GAATGC	1 cut(s)	152
BsnI	GGCC	1 cut(s)	413
Bso31I	GGTCTC	1 cut(s)	398
Bsp1286I	GDGCHC	1 cut(s)	238
Bsp19I	CCATGG	1 cut(s)	408
BspACI	CCGC	1 cut(s)	477
BspANI	GGCC	1 cut(s)	413
BspCNI	CTCAG	1 cut(s)	265
BspLI	GGNNCC	1 cut(s)	399
BspTNI	GGTCTC	1 cut(s)	398
BssECI	CCNNGG	1 cut(s)	408
BssT1I	CCWWGG	1 cut(s)	408
BstDEI	CTNAG	1 cut(s)	273
BstDSI	CCRYGG	1 cut(s)	408
BstEII	GGTNACC	1 cut(s)	248
BstF5I	GGATG	1 cut(s)	271
BstMAI	GTCTC	2 cut(s)	209, 398
BstPI	GGTNACC	1 cut(s)	248
BstSLI	GKGCMC	1 cut(s)	238
BsuRI	GGCC	1 cut(s)	413
BtgI	CCRYGG	1 cut(s)	408
BtsCI	GGATG	1 cut(s)	271
BtsI	GCAGTG	2 cut(s)	198, 486
BtsIMutI	CAGTG	2 cut(s)	198, 486
Csp6I	GTAC	1 cut(s)	193
CviAII	CATG	2 cut(s)	394, 409
CviJI	RGCY	5 cut(s)	107, 122, 398, 413, 473
CviKI_1	RGCY	5 cut(s)	107, 122, 398, 413, 473
CviQI	GTAC	1 cut(s)	193
DdeI	CTNAG	1 cut(s)	273
EaeI	YGGCCR	1 cut(s)	411
Eco130I	CCWWGG	1 cut(s)	408
Eco31I	GGTCTC	1 cut(s)	398
Eco57I	CTGAAG	2 cut(s)	122, 128
Eco91I	GGTNACC	1 cut(s)	248
EcoO65I	GGTNACC	1 cut(s)	248
EcoT14I	CCWWGG	1 cut(s)	408
ErhI	CCWWGG	1 cut(s)	408
FaeI	CATG	2 cut(s)	397, 412
FaiI	YATR	9 cut(s)	33, 35, 80, 168, 366, 375, 395, 410, 425
FaqI	GGGAC	2 cut(s)	128, 322
FatI	CATG	2 cut(s)	393, 408
FokI	GGATG	1 cut(s)	278
GsaI	CCCAGC	1 cut(s)	323
GsuI	CTGGAG	1 cut(s)	384
HaeIII	GGCC	1 cut(s)	413
Hin1II	CATG	2 cut(s)	397, 412
HinfI	GANTC	2 cut(s)	135, 269
HphI	GGTGA	1 cut(s)	260
Hpy166II	GTNNAC	2 cut(s)	164, 236
Hpy188I	TCNGA	6 cut(s)	51, 102, 134, 147, 226, 274
Hpy188III	TCNNGA	4 cut(s)	125, 185, 401, 431
Hpy8I	GTNNAC	2 cut(s)	164, 236
HpyAV	CCTTC	1 cut(s)	97
HpyCH4V	TGCA	2 cut(s)	203, 236
HpyF3I	CTNAG	1 cut(s)	273
Hsp92II	CATG	2 cut(s)	397, 412
LmnI	GCTCC	2 cut(s)	355, 403
LpnPI	CCDG	6 cut(s)	97, 164, 216, 333, 414, 444
LweI	GCATC	2 cut(s)	217, 367
MaeIII	GTNAC	1 cut(s)	248
MboII	GAAGA	2 cut(s)	391, 469
MfeI	CAATTG	1 cut(s)	312
MhlI	GDGCHC	1 cut(s)	238
MluCI	AATT	7 cut(s)	14, 40, 287, 299, 312, 388, 442
MlyI	GAGTC	1 cut(s)	263
MnlI	CCTC	3 cut(s)	181, 205, 446
MroXI	GAANNNNTTC	1 cut(s)	152
MseI	TTAA	1 cut(s)	12
MslI	CAYNNNNRTG	1 cut(s)	243
MunI	CAATTG	1 cut(s)	312
Mva1269I	GAATGC	1 cut(s)	152
NcoI	CCATGG	1 cut(s)	408
NlaIII	CATG	2 cut(s)	397, 412
NlaIV	GGNNCC	1 cut(s)	399
NmuCI	GTSAC	1 cut(s)	248
PctI	GAATGC	1 cut(s)	152
PdmI	GAANNNNTTC	1 cut(s)	152
PfeI	GAWTC	1 cut(s)	135
PleI	GAGTC	1 cut(s)	263
PpsI	GAGTC	1 cut(s)	263
PspEI	GGTNACC	1 cut(s)	248
PspFI	CCCAGC	1 cut(s)	319
PspN4I	GGNNCC	1 cut(s)	399
RsaI	GTAC	1 cut(s)	194
RsaNI	GTAC	1 cut(s)	193
RseI	CAYNNNNRTG	1 cut(s)	243
SaqAI	TTAA	1 cut(s)	12
SchI	GAGTC	1 cut(s)	263
SduI	GDGCHC	1 cut(s)	238
SetI	ASST	4 cut(s)	124, 183, 438, 475
SfaNI	GCATC	2 cut(s)	217, 367
SmiMI	CAYNNNNRTG	1 cut(s)	243
SmlI	CTYRAG	3 cut(s)	125, 157, 185
SmoI	CTYRAG	3 cut(s)	125, 157, 185
Sse9I	AATT	7 cut(s)	14, 40, 287, 299, 312, 388, 442
SsiI	CCGC	1 cut(s)	477
StyI	CCWWGG	1 cut(s)	408
TasI	AATT	7 cut(s)	14, 40, 287, 299, 312, 388, 442
TfiI	GAWTC	1 cut(s)	135
Tru1I	TTAA	1 cut(s)	12
Tru9I	TTAA	1 cut(s)	12
TscAI	CASTG	2 cut(s)	205, 486
TseFI	GTSAC	1 cut(s)	248
Tsp45I	GTSAC	1 cut(s)	248
TspDTI	ATGAA	3 cut(s)	50, 82, 382
TspRI	CASTG	2 cut(s)	205, 486
VneI	GTGCAC	1 cut(s)	234
XapI	RAATTY	2 cut(s)	299, 388
XmnI	GAANNNNTTC	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.