Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0002510

Physical Location & Seq

Genomic Coordinates Forward (+)

5033379 .. 5034288

Gene Structure 910 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g05770.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGGAAGAACTAGAGAAAGAATGCATGAATCTTCGTCGTCAAGAGCAAGATATTTTAAAGAATCTAAAGGGTCATAAGGACGAAGATCTTCTTAAAGGTCAAGCAGTGAAGAACCAAAAGGCTCTCTGGGACAAAGCTCTTGAGTTCAGATTCTTGCTTCAGAAAGCATTCTCAAGTTCACATAGATTACCGAAGGAGCCAGTGAGGTCTTTATTTTGCGATTCACATGAGGGTGTCAATGCAGCATATTCTGATCTAGTTGACTCATCAAGAGAACTTTGGACTCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AATF-Che1 TRAUB

Protein Analysis

97

Amino Acids

11.26

Weight (kDa)

6.41

Isoelectric Point (pI)

67.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61330 AT5G61330 AT5G61330
fragaria_vesca	FvH4_7g09370 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810
malus_domestica	MD02G1217000.v1.1 MD02G1263900.v1.1 MD02G1264000.v1.1 MD07G1073400.v1.1 MD07G1101900.v1.1 MD07G1102000.v1.1 MD07G1102300.v1.1 MD07G1103300.v1.1 MD08G1040900.v1.1
prunus_persica	Prupe.2G127200_v2.0.a1 Prupe.2G127200_v2.0.a1 Prupe.2G127200_v2.0.a1 Prupe.2G127200_v2.0.a1
pyrus_communis	pycom02g17860 pycom07g05740 pycom07g05770 pycom07g08340
rosa_chinensis	RchiOBHm_Chr1g0346971
rosa_laevigata	RLG00000028767
rosa_multiflora	Rmu_co8367419.1_g000001 Rmu_sc0001731.1_g000013 Rmu_sc0002705.1_g000017 Rmu_sc0008581.1_g000020
rosa_roxburghii	Rroxscaffold_4G00308010
rosa_samantha	Rh1AG202700 Rh1BG168600 Rh1BG168700 Rh1CG187400 Rh1DG199300 Rh1DG199400
rosa_wichuraiana	Rw1G016980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	143
AluBI	AGCT	1 cut(s)	137
AluI	AGCT	1 cut(s)	137
ApeKI	GCWGC	1 cut(s)	242
Asp700I	GAANNNNTTC	2 cut(s)	87, 167
BbvI	GCAGC	1 cut(s)	254
BfaI	CTAG	3 cut(s)	11, 257, 289
BglII	AGATCT	1 cut(s)	85
BisI	GCNGC	1 cut(s)	243
BlsI	GCNGC	1 cut(s)	244
BmiI	GGNNCC	1 cut(s)	198
BpuEI	CTTGAG	2 cut(s)	157, 161
Bse1I	ACTGG	1 cut(s)	200
BseNI	ACTGG	1 cut(s)	200
BseXI	GCAGC	1 cut(s)	254
BslFI	GGGAC	1 cut(s)	143
BsmFI	GGGAC	1 cut(s)	143
BsmI	GAATGC	2 cut(s)	26, 167
Bsp143I	GATC	2 cut(s)	85, 253
BspLI	GGNNCC	1 cut(s)	198
BsrI	ACTGG	1 cut(s)	200
BssMI	GATC	2 cut(s)	85, 253
BstKTI	GATC	2 cut(s)	88, 256
BstMBI	GATC	2 cut(s)	85, 253
BstV1I	GCAGC	1 cut(s)	254
BstX2I	RGATCY	1 cut(s)	85
BstYI	RGATCY	1 cut(s)	85
BtsI	GCAGTG	1 cut(s)	111
BtsIMutI	CAGTG	2 cut(s)	111, 207
CviAII	CATG	2 cut(s)	25, 227
CviJI	RGCY	3 cut(s)	122, 137, 199
CviKI_1	RGCY	3 cut(s)	122, 137, 199
DpnI	GATC	2 cut(s)	87, 255
DpnII	GATC	2 cut(s)	85, 253
DraI	TTTAAA	1 cut(s)	57
Eco57I	CTGAAG	1 cut(s)	143
EcoT22I	ATGCAT	1 cut(s)	26
FaeI	CATG	2 cut(s)	28, 230
FaiI	YATR	5 cut(s)	26, 75, 183, 228, 247
FalI	AAGNNNNNCTT	2 cut(s)	75, 107
FaqI	GGGAC	1 cut(s)	143
FatI	CATG	2 cut(s)	24, 226
Fnu4HI	GCNGC	1 cut(s)	243
Fsp4HI	GCNGC	1 cut(s)	243
FspBI	CTAG	3 cut(s)	11, 257, 289
GluI	GCNGC	1 cut(s)	243
Hin1II	CATG	2 cut(s)	28, 230
HincII	GTYRAC	1 cut(s)	262
HindII	GTYRAC	1 cut(s)	262
HinfI	GANTC	6 cut(s)	28, 61, 150, 221, 263, 283
Hpy166II	GTNNAC	2 cut(s)	179, 262
Hpy188I	TCNGA	3 cut(s)	149, 162, 253
Hpy188III	TCNNGA	3 cut(s)	41, 140, 270
Hpy8I	GTNNAC	2 cut(s)	179, 262
Hpy99I	CGWCG	1 cut(s)	39
HpyAV	CCTTC	1 cut(s)	187
HpyCH4V	TGCA	2 cut(s)	24, 242
Hsp92II	CATG	2 cut(s)	28, 230
Kzo9I	GATC	2 cut(s)	85, 253
LmnI	GCTCC	1 cut(s)	196
LpnPI	CCDG	2 cut(s)	112, 213
Lsp1109I	GCAGC	1 cut(s)	254
MaeI	CTAG	3 cut(s)	11, 257, 289
MalI	GATC	2 cut(s)	87, 255
MboI	GATC	2 cut(s)	85, 253
MboII	GAAGA	5 cut(s)	17, 23, 80, 95, 121
MflI	RGATCY	1 cut(s)	85
MlyI	GAGTC	2 cut(s)	257, 277
MnlI	CCTC	2 cut(s)	198, 223
Mph1103I	ATGCAT	1 cut(s)	26
MroXI	GAANNNNTTC	2 cut(s)	87, 167
MseI	TTAA	2 cut(s)	56, 93
MslI	CAYNNNNRTG	1 cut(s)	231
Mva1269I	GAATGC	2 cut(s)	26, 167
NdeII	GATC	2 cut(s)	85, 253
NlaIII	CATG	2 cut(s)	28, 230
NlaIV	GGNNCC	1 cut(s)	198
NsiI	ATGCAT	1 cut(s)	26
PctI	GAATGC	2 cut(s)	26, 167
PdmI	GAANNNNTTC	2 cut(s)	87, 167
PfeI	GAWTC	4 cut(s)	28, 61, 150, 221
PkrI	GCNGC	1 cut(s)	244
PleI	GAGTC	2 cut(s)	257, 277
PpsI	GAGTC	2 cut(s)	257, 277
PspN4I	GGNNCC	1 cut(s)	198
PsuI	RGATCY	1 cut(s)	85
RseI	CAYNNNNRTG	1 cut(s)	231
SaqAI	TTAA	2 cut(s)	56, 93
SatI	GCNGC	1 cut(s)	243
Sau3AI	GATC	2 cut(s)	85, 253
SchI	GAGTC	2 cut(s)	257, 277
SetI	ASST	3 cut(s)	100, 139, 209
SmiMI	CAYNNNNRTG	1 cut(s)	231
SmlI	CTYRAG	2 cut(s)	140, 172
SmoI	CTYRAG	2 cut(s)	140, 172
SspMI	CTAG	3 cut(s)	11, 257, 289
TfiI	GAWTC	4 cut(s)	28, 61, 150, 221
Tru1I	TTAA	2 cut(s)	56, 93
Tru9I	TTAA	2 cut(s)	56, 93
TscAI	CASTG	2 cut(s)	111, 207
TseI	GCWGC	1 cut(s)	242
TspDTI	ATGAA	1 cut(s)	41
TspRI	CASTG	2 cut(s)	111, 207
XmnI	GAANNNNTTC	2 cut(s)	87, 167
XspI	CTAG	3 cut(s)	11, 257, 289
Zsp2I	ATGCAT	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.