Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0002510

Physical Location & Seq

Genomic Coordinates Reverse (-)

11404926 .. 11415418

Gene Structure 10493 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1101900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGTCACAATCATCTACGAACATTGATGGTGATGAGGATCGGTCATGGATTTCTGAGTTGCTGTCGAGAATAGCTACTTTCATAAACAAATCGATAAAAAAATGGCAAAGGAAGGCAGAGGTGACCACATGTGCTGCTTCTATTAAAAGCAAACTGCATGGTTTAAATCAGAATATTAGTGAACAAGTTGCATCTTATATGAGAGATCCAAGCAGAATGGTTAGGCAAAAACAGATGAGGAAATCAGCAGTTGCTGTATTTGGTATTACAACATTTTATTCTTTGAAAAAGTTGCATGCTAAGAAGGGGAAGATTGTTGACAGAAGAGCCACTAAGAGTCGCAAGATAAGGTTATCAATAGATTCTTCGGTTCCCTATGTGAAACTGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AATF-Che1 TRAUB

Protein Analysis

131

Amino Acids

14.82

Weight (kDa)

10.53

Isoelectric Point (pI)

48.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61330 AT5G61330 AT5G61330
fragaria_vesca	FvH4_7g09370 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810
malus_domestica	MD02G1217000.v1.1 MD02G1263900.v1.1 MD02G1264000.v1.1 MD07G1073400.v1.1 MD07G1101900.v1.1 MD07G1102000.v1.1 MD07G1102300.v1.1 MD07G1103300.v1.1 MD08G1040900.v1.1
prunus_persica	Prupe.2G127200_v2.0.a1 Prupe.2G127200_v2.0.a1 Prupe.2G127200_v2.0.a1 Prupe.2G127200_v2.0.a1
pyrus_communis	pycom02g17860 pycom07g05740 pycom07g05770 pycom07g08340
rosa_chinensis	RchiOBHm_Chr1g0346971
rosa_laevigata	RLG00000028767
rosa_multiflora	Rmu_co8367419.1_g000001 Rmu_sc0001731.1_g000013 Rmu_sc0002705.1_g000017 Rmu_sc0008581.1_g000020
rosa_roxburghii	Rroxscaffold_4G00308010
rosa_samantha	Rh1AG202700 Rh1BG168600 Rh1BG168700 Rh1CG187400 Rh1DG199300 Rh1DG199400
rosa_wichuraiana	Rw1G016980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	45, 200
AflIII	ACRYGT	1 cut(s)	128
AgsI	TTSAA	1 cut(s)	286
AluBI	AGCT	1 cut(s)	74
AluI	AGCT	1 cut(s)	74
AlwI	GGATC	2 cut(s)	45, 200
AlwNI	CAGNNNCTG	1 cut(s)	254
ApeKI	GCWGC	1 cut(s)	134
AsuHPI	GGTGA	2 cut(s)	41, 133
BbvI	GCAGC	1 cut(s)	121
BccI	CCATC	1 cut(s)	20
BisI	GCNGC	1 cut(s)	135
BlsI	GCNGC	1 cut(s)	136
BmiI	GGNNCC	1 cut(s)	372
BmsI	GCATC	1 cut(s)	200
Bsa29I	ATCGAT	1 cut(s)	92
BsaBI	GATNNNNATC	1 cut(s)	36
Bse8I	GATNNNNATC	1 cut(s)	36
BseCI	ATCGAT	1 cut(s)	92
BseJI	GATNNNNATC	1 cut(s)	36
BseMII	CTCAG	1 cut(s)	45
BseXI	GCAGC	1 cut(s)	121
BshVI	ATCGAT	1 cut(s)	92
Bsp143I	GATC	2 cut(s)	37, 205
BspCNI	CTCAG	1 cut(s)	46
BspDI	ATCGAT	1 cut(s)	92
BspLI	GGNNCC	1 cut(s)	372
BspPI	GGATC	2 cut(s)	45, 200
BspQI	GCTCTTC	1 cut(s)	319
BssMI	GATC	2 cut(s)	37, 205
Bst6I	CTCTTC	1 cut(s)	319
BstC8I	GCNNGC	1 cut(s)	297
BstDEI	CTNAG	3 cut(s)	54, 300, 333
BstEII	GGTNACC	1 cut(s)	121
BstKTI	GATC	2 cut(s)	40, 208
BstMBI	GATC	2 cut(s)	37, 205
BstNSI	RCATGY	2 cut(s)	132, 299
BstPI	GGTNACC	1 cut(s)	121
BstV1I	GCAGC	1 cut(s)	121
BstX2I	RGATCY	1 cut(s)	205
BstYI	RGATCY	1 cut(s)	205
Bsu15I	ATCGAT	1 cut(s)	92
BsuTUI	ATCGAT	1 cut(s)	92
Cac8I	GCNNGC	1 cut(s)	297
CaiI	CAGNNNCTG	1 cut(s)	254
ClaI	ATCGAT	1 cut(s)	92
CviAII	CATG	4 cut(s)	45, 129, 158, 296
CviJI	RGCY	2 cut(s)	74, 329
CviKI_1	RGCY	2 cut(s)	74, 329
DdeI	CTNAG	3 cut(s)	54, 300, 333
DpnI	GATC	2 cut(s)	39, 207
DpnII	GATC	2 cut(s)	37, 205
DraI	TTTAAA	1 cut(s)	165
Eam1104I	CTCTTC	1 cut(s)	319
EarI	CTCTTC	1 cut(s)	319
Eco91I	GGTNACC	1 cut(s)	121
EcoO65I	GGTNACC	1 cut(s)	121
FaeI	CATG	4 cut(s)	48, 132, 161, 299
FaiI	YATR	8 cut(s)	46, 83, 130, 159, 198, 200, 297, 378
FatI	CATG	4 cut(s)	44, 128, 157, 295
Fnu4HI	GCNGC	1 cut(s)	135
Fsp4HI	GCNGC	1 cut(s)	135
GluI	GCNGC	1 cut(s)	135
Hin1II	CATG	4 cut(s)	48, 132, 161, 299
HincII	GTYRAC	1 cut(s)	319
HindII	GTYRAC	1 cut(s)	319
HinfI	GANTC	2 cut(s)	337, 362
HphI	GGTGA	2 cut(s)	41, 133
Hpy166II	GTNNAC	2 cut(s)	182, 319
Hpy188I	TCNGA	2 cut(s)	55, 171
Hpy188III	TCNNGA	1 cut(s)	66
Hpy8I	GTNNAC	2 cut(s)	182, 319
HpyAV	CCTTC	2 cut(s)	106, 298
HpyCH4V	TGCA	3 cut(s)	157, 191, 295
HpyF3I	CTNAG	3 cut(s)	54, 300, 333
Hsp92II	CATG	4 cut(s)	48, 132, 161, 299
Kzo9I	GATC	2 cut(s)	37, 205
LguI	GCTCTTC	1 cut(s)	319
Lsp1109I	GCAGC	1 cut(s)	121
LweI	GCATC	1 cut(s)	200
MaeIII	GTNAC	2 cut(s)	3, 121
MalI	GATC	2 cut(s)	39, 207
MboI	GATC	2 cut(s)	37, 205
MboII	GAAGA	3 cut(s)	322, 336, 357
MflI	RGATCY	1 cut(s)	205
MlyI	GAGTC	1 cut(s)	346
MnlI	CCTC	3 cut(s)	28, 112, 231
MseI	TTAA	2 cut(s)	144, 164
NdeII	GATC	2 cut(s)	37, 205
NlaIII	CATG	4 cut(s)	48, 132, 161, 299
NlaIV	GGNNCC	1 cut(s)	372
NmuCI	GTSAC	2 cut(s)	3, 121
NspI	RCATGY	2 cut(s)	132, 299
PaeI	GCATGC	1 cut(s)	299
PciI	ACATGT	1 cut(s)	128
PciSI	GCTCTTC	1 cut(s)	319
PfeI	GAWTC	1 cut(s)	362
PkrI	GCNGC	1 cut(s)	136
PleI	GAGTC	1 cut(s)	345
PpsI	GAGTC	1 cut(s)	345
PscI	ACATGT	1 cut(s)	128
PspEI	GGTNACC	1 cut(s)	121
PspN4I	GGNNCC	1 cut(s)	372
PstNI	CAGNNNCTG	1 cut(s)	254
PsuI	RGATCY	1 cut(s)	205
SapI	GCTCTTC	1 cut(s)	319
SaqAI	TTAA	2 cut(s)	144, 164
SatI	GCNGC	1 cut(s)	135
Sau3AI	GATC	2 cut(s)	37, 205
SchI	GAGTC	1 cut(s)	346
SetI	ASST	3 cut(s)	76, 123, 353
SfaNI	GCATC	1 cut(s)	200
SgeI	CNNG	8 cut(s)	57, 78, 141, 170, 197, 222, 308, 355
SphI	GCATGC	1 cut(s)	299
SspI	AATATT	1 cut(s)	175
TaqI	TCGA	2 cut(s)	65, 92
TaqII	GACCGA	1 cut(s)	30
TfiI	GAWTC	1 cut(s)	362
Tru1I	TTAA	2 cut(s)	144, 164
Tru9I	TTAA	2 cut(s)	144, 164
TseFI	GTSAC	2 cut(s)	3, 121
TseI	GCWGC	1 cut(s)	134
Tsp45I	GTSAC	2 cut(s)	3, 121
TspDTI	ATGAA	1 cut(s)	70
XceI	RCATGY	2 cut(s)	132, 299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.