Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0002510

Physical Location & Seq

Genomic Coordinates Forward (+)

29508266 .. 29513194

Gene Structure 4929 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00308010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1311 bp

ATGGGAAAGCCTTCAAAGCGGTCGAGAAAGGCGCCTGAAAGTGACAGTGATTTTGAGGACGATGGTGATTTGGACAGCCATGAGCTAAATATGGAGGAAGAAGAGGATGAATTTGAGGACGAGGAGGATGAAAAATCTGGTAATGAAGAAGAATCCGGTAGCGGAGAAGAAGAGGATGAAGAAGAGGAGAGGAGGAAGAAGATGGGGAAGAAGAACATGGTAATAAAGATGCTGAGATGGAAGAACTTGAGAAACAATACATGGATATTCGGCACGAAGAGCATCTCAAACTTTCAAACTACTAGGAGAAGACATGCTAATTTGTCAGTTGTCGATAAACAAAATGGAAAAGATATTCTCAAGAATCTAAAGCATCACAAGGGTGAAGATCTTCTTAAAGGTCAAGCACTGAAGAACCAAAAGGCTATCTGGGACAAAACTCTTGAGTTCAGATTCTTGCTTCAGAAAGCATTCTCAAGTTCAAATAGATTACCACAGGAGCCAGTTAGGTCTCTGTTCTGTGGATCACATGAGGATGTGAATGCAGCATATTCTGATCTAGTTACATCATCAAAGAAAACTTTGAATTCTCTTCTGGAACTGCAAGAGGCTTTGGTTGAAAAGAACCCATCTATCACACAAGATGCAACAACTGGTAACTCTGGACGATCTAAGCATTCAGAACCATCTAAAAACATTGGTGTTGATGGTGATGAGGATTGGTCAAGGATTTCTAACTGGCTTTCAAGAATAGCTACTTTCAGAAATAAAGAAATTGACAAATGGCAAACGAGGGCACAGGTCAACACAGGTGCTGCTTCTATTAAAGGCCGACTACAAGCTTTTAATCAGAGTATTAGCCAACAAGTTGCTGCCTATATGAGAGATCCAAGCAGAATGGTTAGGCAGATGCAGATGAGGCAATCAGCAGTTGGTGTATTTGGGACTGTTCTTAAGGGGAAGGATACTCCGAAGGGAGAGGAATCACAATCTGATGCTGCTTCCCAAGCTGATGGTGACCCTGAACTTTTGGATGACTCGGAGTTTTACCAGCAACTACTAAAAGAATTTTTTGAGACAATTGACCCAACATCTTCTGAGACGGCCTTTTATTCACTGAAAAAGATGCAGTCTAAGAAGAGGAAGATTGTTGATAGGCGAGCCTCAAAGAGTCGTAAGATAAGGTATAATGTTCATGAGAAGATTGTAAATTTCATGGCTCCAGAGCCTAGGGTTCTTCCTCCTATGTTCCCTGACCTCACATGTTTGTTCGGAATGAAGAACTCAAAACCAGCTTCTGTAGTGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AATF-Che1 TRAUB

Protein Analysis

436

Amino Acids

49.73

Weight (kDa)

6.72

Isoelectric Point (pI)

58.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AATF-Che1	PF13339	130 - 265	2.9e-30	Apoptosis antagonizing transcription factor
TRAUB	PF08164	350 - 411	1.8e-20	Apoptosis-antagonizing transcription factor, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61330 AT5G61330 AT5G61330
fragaria_vesca	FvH4_7g09370 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810
malus_domestica	MD02G1217000.v1.1 MD02G1263900.v1.1 MD02G1264000.v1.1 MD07G1073400.v1.1 MD07G1101900.v1.1 MD07G1102000.v1.1 MD07G1102300.v1.1 MD07G1103300.v1.1 MD08G1040900.v1.1
prunus_persica	Prupe.2G127200_v2.0.a1 Prupe.2G127200_v2.0.a1 Prupe.2G127200_v2.0.a1 Prupe.2G127200_v2.0.a1
pyrus_communis	pycom02g17860 pycom07g05740 pycom07g05770 pycom07g08340
rosa_chinensis	RchiOBHm_Chr1g0346971
rosa_laevigata	RLG00000028767
rosa_multiflora	Rmu_co8367419.1_g000001 Rmu_sc0001731.1_g000013 Rmu_sc0002705.1_g000017 Rmu_sc0008581.1_g000020
rosa_roxburghii	Rroxscaffold_4G00308010
rosa_samantha	Rh1AG202700 Rh1BG168600 Rh1BG168700 Rh1CG187400 Rh1DG199300 Rh1DG199400
rosa_wichuraiana	Rw1G016980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	31
AciI	CCGC	2 cut(s)	19, 162
AclWI	GGATC	2 cut(s)	532, 881
AcsI	RAATTY	4 cut(s)	110, 586, 1067, 1210
AcuI	CTGAAG	2 cut(s)	431, 446
AcyI	GRCGYC	1 cut(s)	32
AflII	CTTAAG	1 cut(s)	953
AflIII	ACRYGT	1 cut(s)	1262
AgsI	TTSAA	6 cut(s)	15, 296, 483, 586, 620, 747
AleI	CACNNNNGTG	1 cut(s)	381
AluBI	AGCT	5 cut(s)	85, 755, 842, 1010, 1295
AluI	AGCT	5 cut(s)	85, 755, 842, 1010, 1295
Alw26I	GTCTC	3 cut(s)	516, 1070, 1094
AlwI	GGATC	2 cut(s)	532, 881
AlwNI	CAGNNNCTG	2 cut(s)	815, 1298
AoxI	GGCC	2 cut(s)	829, 1104
ApeKI	GCWGC	4 cut(s)	545, 815, 872, 998
ApoI	RAATTY	4 cut(s)	110, 586, 1067, 1210
ArsI	GACNNNNNNTTYG	2 cut(s)	35, 67
Asp700I	GAANNNNTTC	3 cut(s)	10, 390, 470
AspA2I	CCTAGG	1 cut(s)	1229
AspLEI	GCGC	1 cut(s)	34
AsuHPI	GGTGA	4 cut(s)	77, 395, 722, 1028
AvrII	CCTAGG	1 cut(s)	1229
BaeGI	GKGCMC	1 cut(s)	799
BanI	GGYRCC	1 cut(s)	31
BbsI	GAAGAC	1 cut(s)	316
BbvI	GCAGC	4 cut(s)	557, 802, 859, 985
BccI	CCATC	7 cut(s)	56, 196, 231, 637, 694, 701, 1007
BceAI	ACGGC	1 cut(s)	1119
BciVI	GTATCC	1 cut(s)	958
BcoDI	GTCTC	3 cut(s)	516, 1070, 1094
BfaI	CTAG	3 cut(s)	303, 560, 1230
BfmI	CTRYAG	1 cut(s)	1299
BfoI	RGCGCY	1 cut(s)	35
BfrI	CTTAAG	1 cut(s)	953
BfuI	GTATCC	1 cut(s)	958
BglII	AGATCT	1 cut(s)	388
BisI	GCNGC	4 cut(s)	546, 816, 873, 999
BlnI	CCTAGG	1 cut(s)	1229
BlsI	GCNGC	4 cut(s)	547, 817, 874, 1000
BmiI	GGNNCC	3 cut(s)	33, 501, 1221
BmsI	GCATC	7 cut(s)	219, 291, 382, 634, 900, 985, 1116
BpiI	GAAGAC	1 cut(s)	316
BpmI	CTGGAG	1 cut(s)	1206
BpuEI	CTTGAG	4 cut(s)	268, 344, 460, 464
BsaHI	GRCGYC	1 cut(s)	32
BsaI	GGTCTC	1 cut(s)	516
BsaJI	CCNNGG	1 cut(s)	1229
BsaWI	WCCGGW	1 cut(s)	155
Bse1I	ACTGG	3 cut(s)	503, 658, 743
BseDI	CCNNGG	1 cut(s)	1229
BseGI	GGATG	5 cut(s)	112, 133, 181, 541, 1039
BseMII	CTCAG	2 cut(s)	224, 1089
BseNI	ACTGG	3 cut(s)	503, 658, 743
BseRI	GAGGAG	3 cut(s)	137, 200, 205
BseSI	GKGCMC	1 cut(s)	799
BseXI	GCAGC	4 cut(s)	557, 802, 859, 985
Bsh1285I	CGRYCG	1 cut(s)	23
BshFI	GGCC	2 cut(s)	831, 1106
BshNI	GGYRCC	1 cut(s)	31
BsiEI	CGRYCG	1 cut(s)	23
BsiSI	CCGG	1 cut(s)	156
BslFI	GGGAC	2 cut(s)	446, 958
BsmAI	GTCTC	3 cut(s)	516, 1070, 1094
BsmBI	CGTCTC	1 cut(s)	1094
BsmFI	GGGAC	2 cut(s)	446, 958
BsmI	GAATGC	3 cut(s)	470, 547, 676
BsnI	GGCC	2 cut(s)	831, 1106
Bso31I	GGTCTC	1 cut(s)	516
Bsp1286I	GDGCHC	1 cut(s)	799
Bsp143I	GATC	5 cut(s)	388, 524, 556, 668, 886
BspACI	CCGC	2 cut(s)	19, 162
BspANI	GGCC	2 cut(s)	831, 1106
BspCNI	CTCAG	2 cut(s)	225, 1090
BspHI	TCATGA	1 cut(s)	1195
BspLI	GGNNCC	3 cut(s)	33, 501, 1221
BspPI	GGATC	2 cut(s)	532, 881
BspQI	GCTCTTC	1 cut(s)	272
BspT107I	GGYRCC	1 cut(s)	31
BspTI	CTTAAG	1 cut(s)	953
BspTNI	GGTCTC	1 cut(s)	516
BsrI	ACTGG	3 cut(s)	503, 658, 743
BssECI	CCNNGG	1 cut(s)	1229
BssMI	GATC	5 cut(s)	388, 524, 556, 668, 886
BssNI	GRCGYC	1 cut(s)	32
BssT1I	CCWWGG	1 cut(s)	1229
Bst4CI	ACNGT	2 cut(s)	47, 949
Bst6I	CTCTTC	6 cut(s)	96, 165, 177, 272, 597, 1133
BstACI	GRCGYC	1 cut(s)	32
BstAFI	CTTAAG	1 cut(s)	953
BstC8I	GCNNGC	1 cut(s)	1161
BstDEI	CTNAG	4 cut(s)	233, 672, 1098, 1134
BstEII	GGTNACC	1 cut(s)	1016
BstF5I	GGATG	5 cut(s)	112, 133, 181, 541, 1039
BstH2I	RGCGCY	1 cut(s)	35
BstHHI	GCGC	1 cut(s)	34
BstKTI	GATC	5 cut(s)	391, 527, 559, 671, 889
BstMAI	GTCTC	3 cut(s)	516, 1070, 1094
BstMBI	GATC	5 cut(s)	388, 524, 556, 668, 886
BstMCI	CGRYCG	1 cut(s)	23
BstMWI	GCNNNNNNNGC	4 cut(s)	16, 279, 919, 1007
BstNSI	RCATGY	2 cut(s)	317, 1266
BstPI	GGTNACC	1 cut(s)	1016
BstSFI	CTRYAG	1 cut(s)	1299
BstSLI	GKGCMC	1 cut(s)	799
BstV1I	GCAGC	4 cut(s)	557, 802, 859, 985
BstV2I	GAAGAC	1 cut(s)	316
BstX2I	RGATCY	2 cut(s)	388, 886
BstXI	CCANNNNNNTGG	1 cut(s)	1013
BstYI	RGATCY	2 cut(s)	388, 886
BsuI	GTATCC	1 cut(s)	958
BsuRI	GGCC	2 cut(s)	831, 1106
BtsCI	GGATG	5 cut(s)	112, 133, 181, 541, 1039
BtsIMutI	CAGTG	3 cut(s)	52, 407, 1115
Cac8I	GCNNGC	1 cut(s)	1161
CaiI	CAGNNNCTG	2 cut(s)	815, 1298
CciI	TCATGA	1 cut(s)	1195
CfoI	GCGC	1 cut(s)	34
CviAII	CATG	8 cut(s)	80, 217, 261, 314, 530, 1196, 1216, 1263
DdeI	CTNAG	4 cut(s)	233, 672, 1098, 1134
DinI	GGCGCC	1 cut(s)	33
DpnI	GATC	5 cut(s)	390, 526, 558, 670, 888
DpnII	GATC	5 cut(s)	388, 524, 556, 668, 886
Eam1104I	CTCTTC	6 cut(s)	96, 165, 177, 272, 597, 1133
EarI	CTCTTC	6 cut(s)	96, 165, 177, 272, 597, 1133
Eco130I	CCWWGG	1 cut(s)	1229
Eco31I	GGTCTC	1 cut(s)	516
Eco57I	CTGAAG	2 cut(s)	431, 446
Eco91I	GGTNACC	1 cut(s)	1016
EcoO65I	GGTNACC	1 cut(s)	1016
EcoRI	GAATTC	1 cut(s)	586
EcoT14I	CCWWGG	1 cut(s)	1229
EgeI	GGCGCC	1 cut(s)	33
EheI	GGCGCC	1 cut(s)	33
ErhI	CCWWGG	1 cut(s)	1229
Esp3I	CGTCTC	1 cut(s)	1094
FaeI	CATG	8 cut(s)	83, 220, 264, 317, 533, 1199, 1219, 1266
FalI	AAGNNNNNCTT	2 cut(s)	378, 410
FaqI	GGGAC	2 cut(s)	446, 958
FatI	CATG	8 cut(s)	79, 216, 260, 313, 529, 1195, 1215, 1262
Fnu4HI	GCNGC	4 cut(s)	546, 816, 873, 999
FokI	GGATG	5 cut(s)	119, 140, 188, 548, 1046
Fsp4HI	GCNGC	4 cut(s)	546, 816, 873, 999
FspBI	CTAG	3 cut(s)	303, 560, 1230
GlaI	GCGC	1 cut(s)	33
GluI	GCNGC	4 cut(s)	546, 816, 873, 999
GsuI	CTGGAG	1 cut(s)	1206
HaeII	RGCGCY	1 cut(s)	35
HaeIII	GGCC	2 cut(s)	831, 1106
HapII	CCGG	1 cut(s)	156
HhaI	GCGC	1 cut(s)	34
Hin1I	GRCGYC	1 cut(s)	32
Hin1II	CATG	8 cut(s)	83, 220, 264, 317, 533, 1199, 1219, 1266
Hin6I	GCGC	1 cut(s)	32
HinP1I	GCGC	1 cut(s)	32
HincII	GTYRAC	1 cut(s)	805
HindII	GTYRAC	1 cut(s)	805
HindIII	AAGCTT	1 cut(s)	840
HinfI	GANTC	6 cut(s)	152, 364, 453, 983, 1037, 1171
HpaII	CCGG	1 cut(s)	156
HphI	GGTGA	4 cut(s)	77, 395, 722, 1028
Hpy166II	GTNNAC	1 cut(s)	805
Hpy188III	TCNNGA	8 cut(s)	24, 361, 443, 596, 663, 747, 1196, 1223
Hpy8I	GTNNAC	1 cut(s)	805
HpyAV	CCTTC	3 cut(s)	21, 955, 967
HpyCH4III	ACNGT	2 cut(s)	47, 949
HpyCH4V	TGCA	6 cut(s)	545, 604, 647, 913, 1129, 1306
HpyF10VI	GCNNNNNNNGC	4 cut(s)	16, 279, 919, 1007
HpyF3I	CTNAG	4 cut(s)	233, 672, 1098, 1134
Hsp92I	GRCGYC	1 cut(s)	32
Hsp92II	CATG	8 cut(s)	83, 220, 264, 317, 533, 1199, 1219, 1266
HspAI	GCGC	1 cut(s)	32
KasI	GGCGCC	1 cut(s)	31
Kzo9I	GATC	5 cut(s)	388, 524, 556, 668, 886
LguI	GCTCTTC	1 cut(s)	272
LmnI	GCTCC	2 cut(s)	499, 1225
Lsp1109I	GCAGC	4 cut(s)	557, 802, 859, 985
LweI	GCATC	7 cut(s)	219, 291, 382, 634, 900, 985, 1116
MaeI	CTAG	3 cut(s)	303, 560, 1230
MaeIII	GTNAC	4 cut(s)	41, 562, 656, 1016
MalI	GATC	5 cut(s)	390, 526, 558, 670, 888
MboI	GATC	5 cut(s)	388, 524, 556, 668, 886
MfeI	CAATTG	1 cut(s)	1080
MflI	RGATCY	2 cut(s)	388, 886
MhlI	GDGCHC	1 cut(s)	799
MluCI	AATT	7 cut(s)	110, 319, 586, 774, 1067, 1080, 1210
Mly113I	GGCGCC	1 cut(s)	32
MlyI	GAGTC	2 cut(s)	1031, 1180
MroXI	GAANNNNTTC	3 cut(s)	10, 390, 470
MseI	TTAA	4 cut(s)	396, 825, 846, 954
MslI	CAYNNNNRTG	2 cut(s)	381, 534
MspCI	CTTAAG	1 cut(s)	953
MspI	CCGG	1 cut(s)	156
MunI	CAATTG	1 cut(s)	1080
Mva1269I	GAATGC	3 cut(s)	470, 547, 676
MwoI	GCNNNNNNNGC	4 cut(s)	16, 279, 919, 1007
NarI	GGCGCC	1 cut(s)	32
NdeII	GATC	5 cut(s)	388, 524, 556, 668, 886
NlaIII	CATG	8 cut(s)	83, 220, 264, 317, 533, 1199, 1219, 1266
NlaIV	GGNNCC	3 cut(s)	33, 501, 1221
NmuCI	GTSAC	2 cut(s)	41, 1016
NspI	RCATGY	2 cut(s)	317, 1266
OliI	CACNNNNGTG	1 cut(s)	381
PagI	TCATGA	1 cut(s)	1195
PciI	ACATGT	1 cut(s)	1262
PciSI	GCTCTTC	1 cut(s)	272
PctI	GAATGC	3 cut(s)	470, 547, 676
PdmI	GAANNNNTTC	3 cut(s)	10, 390, 470
PfeI	GAWTC	4 cut(s)	152, 364, 453, 983
PkrI	GCNGC	4 cut(s)	547, 817, 874, 1000
PleI	GAGTC	2 cut(s)	1031, 1179
PluTI	GGCGCC	1 cut(s)	35
PpsI	GAGTC	2 cut(s)	1031, 1179
PscI	ACATGT	1 cut(s)	1262
PspEI	GGTNACC	1 cut(s)	1016
PspN4I	GGNNCC	3 cut(s)	33, 501, 1221
PstNI	CAGNNNCTG	2 cut(s)	815, 1298
PsuI	RGATCY	2 cut(s)	388, 886
RseI	CAYNNNNRTG	2 cut(s)	381, 534
SapI	GCTCTTC	1 cut(s)	272
SaqAI	TTAA	4 cut(s)	396, 825, 846, 954
SatI	GCNGC	4 cut(s)	546, 816, 873, 999
Sau3AI	GATC	5 cut(s)	388, 524, 556, 668, 886
SchI	GAGTC	2 cut(s)	1031, 1180
SduI	GDGCHC	1 cut(s)	799
SfaNI	GCATC	7 cut(s)	219, 291, 382, 634, 900, 985, 1116
SfcI	CTRYAG	1 cut(s)	1299
SfoI	GGCGCC	1 cut(s)	33
SmiMI	CAYNNNNRTG	2 cut(s)	381, 534
SmlI	CTYRAG	5 cut(s)	247, 359, 443, 475, 953
SmoI	CTYRAG	5 cut(s)	247, 359, 443, 475, 953
Sse9I	AATT	7 cut(s)	110, 319, 586, 774, 1067, 1080, 1210
SsiI	CCGC	2 cut(s)	19, 162
SspDI	GGCGCC	1 cut(s)	31
SspMI	CTAG	3 cut(s)	303, 560, 1230
StyI	CCWWGG	1 cut(s)	1229
TaaI	ACNGT	2 cut(s)	47, 949
TaqI	TCGA	2 cut(s)	23, 333
TasI	AATT	7 cut(s)	110, 319, 586, 774, 1067, 1080, 1210
TfiI	GAWTC	4 cut(s)	152, 364, 453, 983
Tru1I	TTAA	4 cut(s)	396, 825, 846, 954
Tru9I	TTAA	4 cut(s)	396, 825, 846, 954
TscAI	CASTG	3 cut(s)	52, 414, 1122
TseFI	GTSAC	2 cut(s)	41, 1016
TseI	GCWGC	4 cut(s)	545, 815, 872, 998
Tsp45I	GTSAC	2 cut(s)	41, 1016
TspDTI	ATGAA	7 cut(s)	123, 144, 159, 192, 1184, 1204, 1292
TspRI	CASTG	3 cut(s)	52, 414, 1122
Vha464I	CTTAAG	1 cut(s)	953
XapI	RAATTY	4 cut(s)	110, 586, 1067, 1210
XceI	RCATGY	2 cut(s)	317, 1266
XmaJI	CCTAGG	1 cut(s)	1229
XmnI	GAANNNNTTC	3 cut(s)	10, 390, 470
XspI	CTAG	3 cut(s)	303, 560, 1230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.