Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0002510

Physical Location & Seq

Genomic Coordinates Forward (+)

27678148 .. 27683396

Gene Structure 5249 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000028767

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1323 bp

ATGCATTACTACCAGAGAACGCAATCACCTGTTTTGGTTTCTGAACAAGACACAAGGGGCTCAGAAGTTATGGGAAAGCCTTCAAAGCGGTCGAGAAAGGCGCCTGAAAGTGACAGTGATTTTGAGGACGATGGTGATTTGGATAGCCATGAGCTAAATATGGAGGAAGAAGAGGATGAATTTGAGGACGTGGACGAAGTGGAGGAAGAAAAATCTGGTAATGAAGAAGAATCCGGTAGCGGAGAAGAAGAGGATGAAGAAGAGGGGGAGGAGGACGAAGATGGCGAAGAAGAAAATGGTAATAAAGATGCTGAGATGGAAGAACTTGAGAAACAATACATGAATATTCGTCACGAAGAGCAAGATATTCTCAAGAATCTAAAGCATCACAAGGGTGAAGATCTTCTTAAAGGTCAAGCACTAAAGAACCAAAAGGCTATCTGGGACAAAACTCTTGAGTTCAGATTCTTGCTTCAGAAAGCGTTCTCAAGTTCAAATAGATTACCACAGGAGCCAGTTAGGTCTCTGTTCTGTGGATCACATGAGGATGTGAATGCAGCATATTCCGATCTAGTTACATCATCAAAGAAAACTTTGAATTCTCTTCTGGAACTGCAAGAGGCTTTGGTTGAAAAGAACCCATCTATCACACAAGATGCAACAACTGGTAACTCTGGACGATCTAAGCATTCAGAACCATCTAAAAACATTGGTGTTGATGGTGATGAGGATTGGTCAAGGATTTCTAACTGGCTTTCAAGAATAGCTGCTTTCCGAAACAAAGAAATTGACAAATGGCAAACGAGGGCACAGGTCAACACAGGTGCTGCTTCTATTAAGGGCCGACTACAAGCTTTTAATCAGAGTATTAGCCAACAAGTTGCTGCCTATATGAGAGATCCAAGCAGAATGGTTAAACAGATGCAGATGAGGCGATCGGCAGTTGGTGTATTTGGGACTGTTCTTAAGGGGCAGGATACTCCAAAGGGAGAGGAATCCCAATCTGACACTGCTGGGCAAGCTGATGGTGACCCTGAACTTTTGGATGACTCGGAGTTTTACCAGCAATTACTAAAAGAATTTTTTGAGACAATTGACCCAACATCTTCTGAGACGGCCTTTTATTCACTGAAAAAGATGCAGTCTAAGAAGAGGAAGATTGTTGATAGGCGAGCCTCAAAGAGTCGTAAGATAAGGTATAATGTTCATGAGAAGATTGTAAATTTCATGGCTCCAGAGCCAAGGGTTCTTCCTTCTATGTTCCCTGACCTCACTTGTTTGTTCGGAATGAAGAACTCAAAACCAGCTTCTGTAGTGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AATF-Che1 TRAUB

Protein Analysis

441

Amino Acids

50.02

Weight (kDa)

4.82

Isoelectric Point (pI)

65.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AATF-Che1	PF13339	134 - 269	3.1e-30	Apoptosis antagonizing transcription factor
TRAUB	PF08164	354 - 415	1.7e-20	Apoptosis-antagonizing transcription factor, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61330 AT5G61330 AT5G61330
fragaria_vesca	FvH4_7g09370 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810
malus_domestica	MD02G1217000.v1.1 MD02G1263900.v1.1 MD02G1264000.v1.1 MD07G1073400.v1.1 MD07G1101900.v1.1 MD07G1102000.v1.1 MD07G1102300.v1.1 MD07G1103300.v1.1 MD08G1040900.v1.1
prunus_persica	Prupe.2G127200_v2.0.a1 Prupe.2G127200_v2.0.a1 Prupe.2G127200_v2.0.a1 Prupe.2G127200_v2.0.a1
pyrus_communis	pycom02g17860 pycom07g05740 pycom07g05770 pycom07g08340
rosa_chinensis	RchiOBHm_Chr1g0346971
rosa_laevigata	RLG00000028767
rosa_multiflora	Rmu_co8367419.1_g000001 Rmu_sc0001731.1_g000013 Rmu_sc0002705.1_g000017 Rmu_sc0008581.1_g000020
rosa_roxburghii	Rroxscaffold_4G00308010
rosa_samantha	Rh1AG202700 Rh1BG168600 Rh1BG168700 Rh1CG187400 Rh1DG199300 Rh1DG199400
rosa_wichuraiana	Rw1G016980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	100
AciI	CCGC	2 cut(s)	88, 240
AclWI	GGATC	2 cut(s)	544, 893
AcsI	RAATTY	4 cut(s)	179, 598, 1079, 1222
AcuI	CTGAAG	1 cut(s)	458
AcyI	GRCGYC	1 cut(s)	101
AflII	CTTAAG	1 cut(s)	965
AgsI	TTSAA	5 cut(s)	84, 495, 598, 632, 759
AjiI	CACGTC	1 cut(s)	190
AleI	CACNNNNGTG	1 cut(s)	393
AluBI	AGCT	5 cut(s)	154, 767, 854, 1022, 1307
AluI	AGCT	5 cut(s)	154, 767, 854, 1022, 1307
Alw26I	GTCTC	3 cut(s)	528, 1082, 1106
AlwI	GGATC	2 cut(s)	544, 893
AlwNI	CAGNNNCTG	2 cut(s)	827, 1310
AoxI	GGCC	2 cut(s)	841, 1116
ApeKI	GCWGC	4 cut(s)	557, 767, 827, 884
ApoI	RAATTY	4 cut(s)	179, 598, 1079, 1222
ArsI	GACNNNNNNTTYG	2 cut(s)	104, 136
Asp700I	GAANNNNTTC	3 cut(s)	79, 402, 482
AspLEI	GCGC	1 cut(s)	103
AspS9I	GGNCC	1 cut(s)	841
AsuHPI	GGTGA	5 cut(s)	18, 146, 407, 734, 1040
BaeGI	GKGCMC	1 cut(s)	811
BanI	GGYRCC	1 cut(s)	100
BanII	GRGCYC	1 cut(s)	62
BbvI	GCAGC	4 cut(s)	569, 754, 814, 871
BccI	CCATC	7 cut(s)	125, 275, 310, 649, 706, 713, 1019
BceAI	ACGGC	1 cut(s)	1131
BciVI	GTATCC	1 cut(s)	970
BcoDI	GTCTC	3 cut(s)	528, 1082, 1106
BfaI	CTAG	1 cut(s)	572
BfmI	CTRYAG	1 cut(s)	1311
BfoI	RGCGCY	1 cut(s)	104
BfrI	CTTAAG	1 cut(s)	965
BfuI	GTATCC	1 cut(s)	970
BglII	AGATCT	1 cut(s)	400
BisI	GCNGC	4 cut(s)	558, 768, 828, 885
BlsI	GCNGC	4 cut(s)	559, 769, 829, 886
BmgBI	CACGTC	1 cut(s)	190
BmgT120I	GGNCC	1 cut(s)	841
BmiI	GGNNCC	3 cut(s)	102, 513, 1233
BmsI	GCATC	5 cut(s)	298, 394, 646, 912, 1128
BpmI	CTGGAG	1 cut(s)	1218
BpuEI	CTTGAG	4 cut(s)	347, 356, 472, 476
BsaHI	GRCGYC	1 cut(s)	101
BsaI	GGTCTC	1 cut(s)	528
BsaJI	CCNNGG	1 cut(s)	1241
BsaWI	WCCGGW	1 cut(s)	233
Bse1I	ACTGG	3 cut(s)	515, 670, 755
BseDI	CCNNGG	1 cut(s)	1241
BseGI	GGATG	4 cut(s)	181, 259, 553, 1051
BseMII	CTCAG	3 cut(s)	75, 303, 1101
BseNI	ACTGG	3 cut(s)	515, 670, 755
BseRI	GAGGAG	1 cut(s)	284
BseSI	GKGCMC	1 cut(s)	811
BseXI	GCAGC	4 cut(s)	569, 754, 814, 871
BseYI	CCCAGC	1 cut(s)	1013
Bsh1285I	CGRYCG	2 cut(s)	92, 938
BshFI	GGCC	2 cut(s)	843, 1118
BshNI	GGYRCC	1 cut(s)	100
BsiEI	CGRYCG	2 cut(s)	92, 938
BsiSI	CCGG	1 cut(s)	234
BslFI	GGGAC	2 cut(s)	458, 970
BsmAI	GTCTC	3 cut(s)	528, 1082, 1106
BsmBI	CGTCTC	1 cut(s)	1106
BsmFI	GGGAC	2 cut(s)	458, 970
BsmI	GAATGC	2 cut(s)	559, 688
BsnI	GGCC	2 cut(s)	843, 1118
Bso31I	GGTCTC	1 cut(s)	528
Bsp1286I	GDGCHC	2 cut(s)	62, 811
Bsp143I	GATC	6 cut(s)	400, 536, 568, 680, 898, 935
BspACI	CCGC	2 cut(s)	88, 240
BspANI	GGCC	2 cut(s)	843, 1118
BspCNI	CTCAG	3 cut(s)	74, 304, 1102
BspHI	TCATGA	1 cut(s)	1207
BspLI	GGNNCC	3 cut(s)	102, 513, 1233
BspPI	GGATC	2 cut(s)	544, 893
BspQI	GCTCTTC	1 cut(s)	351
BspT107I	GGYRCC	1 cut(s)	100
BspTI	CTTAAG	1 cut(s)	965
BspTNI	GGTCTC	1 cut(s)	528
BsrI	ACTGG	3 cut(s)	515, 670, 755
BssECI	CCNNGG	1 cut(s)	1241
BssMI	GATC	6 cut(s)	400, 536, 568, 680, 898, 935
BssNI	GRCGYC	1 cut(s)	101
BssT1I	CCWWGG	1 cut(s)	1241
Bst4CI	ACNGT	2 cut(s)	116, 961
Bst6I	CTCTTC	6 cut(s)	165, 243, 255, 351, 609, 1145
BstACI	GRCGYC	1 cut(s)	101
BstAFI	CTTAAG	1 cut(s)	965
BstC8I	GCNNGC	2 cut(s)	1020, 1173
BstDEI	CTNAG	5 cut(s)	61, 312, 684, 1110, 1146
BstEII	GGTNACC	1 cut(s)	1028
BstF5I	GGATG	4 cut(s)	181, 259, 553, 1051
BstH2I	RGCGCY	1 cut(s)	104
BstHHI	GCGC	1 cut(s)	103
BstKTI	GATC	6 cut(s)	403, 539, 571, 683, 901, 938
BstMAI	GTCTC	3 cut(s)	528, 1082, 1106
BstMBI	GATC	6 cut(s)	400, 536, 568, 680, 898, 935
BstMCI	CGRYCG	2 cut(s)	92, 938
BstMWI	GCNNNNNNNGC	3 cut(s)	85, 931, 1019
BstPI	GGTNACC	1 cut(s)	1028
BstSFI	CTRYAG	1 cut(s)	1311
BstSLI	GKGCMC	1 cut(s)	811
BstV1I	GCAGC	4 cut(s)	569, 754, 814, 871
BstX2I	RGATCY	2 cut(s)	400, 898
BstYI	RGATCY	2 cut(s)	400, 898
BsuI	GTATCC	1 cut(s)	970
BsuRI	GGCC	2 cut(s)	843, 1118
BtrI	CACGTC	1 cut(s)	190
BtsCI	GGATG	4 cut(s)	181, 259, 553, 1051
BtsI	GCAGTG	1 cut(s)	1008
BtsIMutI	CAGTG	3 cut(s)	121, 1008, 1127
Cac8I	GCNNGC	2 cut(s)	1020, 1173
CaiI	CAGNNNCTG	2 cut(s)	827, 1310
CciI	TCATGA	1 cut(s)	1207
CfoI	GCGC	1 cut(s)	103
Cfr13I	GGNCC	1 cut(s)	841
CviAII	CATG	5 cut(s)	149, 340, 542, 1208, 1228
DdeI	CTNAG	5 cut(s)	61, 312, 684, 1110, 1146
DinI	GGCGCC	1 cut(s)	102
DpnI	GATC	6 cut(s)	402, 538, 570, 682, 900, 937
DpnII	GATC	6 cut(s)	400, 536, 568, 680, 898, 935
Eam1104I	CTCTTC	6 cut(s)	165, 243, 255, 351, 609, 1145
EarI	CTCTTC	6 cut(s)	165, 243, 255, 351, 609, 1145
Eco130I	CCWWGG	1 cut(s)	1241
Eco24I	GRGCYC	1 cut(s)	62
Eco31I	GGTCTC	1 cut(s)	528
Eco57I	CTGAAG	1 cut(s)	458
Eco91I	GGTNACC	1 cut(s)	1028
EcoO65I	GGTNACC	1 cut(s)	1028
EcoRI	GAATTC	1 cut(s)	598
EcoT14I	CCWWGG	1 cut(s)	1241
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	62
EgeI	GGCGCC	1 cut(s)	102
EheI	GGCGCC	1 cut(s)	102
ErhI	CCWWGG	1 cut(s)	1241
Esp3I	CGTCTC	1 cut(s)	1106
FaeI	CATG	5 cut(s)	152, 343, 545, 1211, 1231
FalI	AAGNNNNNCTT	2 cut(s)	390, 422
FaqI	GGGAC	2 cut(s)	458, 970
FatI	CATG	5 cut(s)	148, 339, 541, 1207, 1227
Fnu4HI	GCNGC	4 cut(s)	558, 768, 828, 885
FokI	GGATG	4 cut(s)	188, 266, 560, 1058
FriOI	GRGCYC	1 cut(s)	62
Fsp4HI	GCNGC	4 cut(s)	558, 768, 828, 885
FspBI	CTAG	1 cut(s)	572
GlaI	GCGC	1 cut(s)	102
GluI	GCNGC	4 cut(s)	558, 768, 828, 885
GsaI	CCCAGC	1 cut(s)	1017
GsuI	CTGGAG	1 cut(s)	1218
HaeII	RGCGCY	1 cut(s)	104
HaeIII	GGCC	2 cut(s)	843, 1118
HapII	CCGG	1 cut(s)	234
HhaI	GCGC	1 cut(s)	103
Hin1I	GRCGYC	1 cut(s)	101
Hin1II	CATG	5 cut(s)	152, 343, 545, 1211, 1231
Hin6I	GCGC	1 cut(s)	101
HinP1I	GCGC	1 cut(s)	101
HincII	GTYRAC	1 cut(s)	817
HindII	GTYRAC	1 cut(s)	817
HindIII	AAGCTT	1 cut(s)	852
HinfI	GANTC	6 cut(s)	230, 376, 465, 995, 1049, 1183
HpaII	CCGG	1 cut(s)	234
HphI	GGTGA	5 cut(s)	18, 146, 407, 734, 1040
Hpy166II	GTNNAC	2 cut(s)	193, 817
Hpy188III	TCNNGA	9 cut(s)	93, 353, 373, 455, 608, 675, 759, 1208, 1235
Hpy8I	GTNNAC	2 cut(s)	193, 817
HpyAV	CCTTC	2 cut(s)	90, 1263
HpyCH4III	ACNGT	2 cut(s)	116, 961
HpyCH4IV	ACGT	1 cut(s)	189
HpyCH4V	TGCA	7 cut(s)	4, 557, 616, 659, 925, 1141, 1318
HpyF10VI	GCNNNNNNNGC	3 cut(s)	85, 931, 1019
HpyF3I	CTNAG	5 cut(s)	61, 312, 684, 1110, 1146
HpySE526I	ACGT	1 cut(s)	189
Hsp92I	GRCGYC	1 cut(s)	101
Hsp92II	CATG	5 cut(s)	152, 343, 545, 1211, 1231
HspAI	GCGC	1 cut(s)	101
KasI	GGCGCC	1 cut(s)	100
Kzo9I	GATC	6 cut(s)	400, 536, 568, 680, 898, 935
LguI	GCTCTTC	1 cut(s)	351
LmnI	GCTCC	2 cut(s)	511, 1237
Lsp1109I	GCAGC	4 cut(s)	569, 754, 814, 871
LweI	GCATC	5 cut(s)	298, 394, 646, 912, 1128
MaeI	CTAG	1 cut(s)	572
MaeII	ACGT	1 cut(s)	189
MaeIII	GTNAC	5 cut(s)	110, 350, 574, 668, 1028
MalI	GATC	6 cut(s)	402, 538, 570, 682, 900, 937
MboI	GATC	6 cut(s)	400, 536, 568, 680, 898, 935
MfeI	CAATTG	1 cut(s)	1092
MflI	RGATCY	2 cut(s)	400, 898
MhlI	GDGCHC	2 cut(s)	62, 811
MluCI	AATT	7 cut(s)	179, 598, 786, 1067, 1079, 1092, 1222
Mly113I	GGCGCC	1 cut(s)	101
MlyI	GAGTC	2 cut(s)	1043, 1192
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	3 cut(s)	79, 402, 482
MseI	TTAA	5 cut(s)	408, 837, 858, 915, 966
MslI	CAYNNNNRTG	2 cut(s)	393, 546
MspCI	CTTAAG	1 cut(s)	965
MspI	CCGG	1 cut(s)	234
MunI	CAATTG	1 cut(s)	1092
Mva1269I	GAATGC	2 cut(s)	559, 688
MwoI	GCNNNNNNNGC	3 cut(s)	85, 931, 1019
NarI	GGCGCC	1 cut(s)	101
NdeII	GATC	6 cut(s)	400, 536, 568, 680, 898, 935
NlaIII	CATG	5 cut(s)	152, 343, 545, 1211, 1231
NlaIV	GGNNCC	3 cut(s)	102, 513, 1233
NmuCI	GTSAC	3 cut(s)	110, 350, 1028
NsiI	ATGCAT	1 cut(s)	6
OliI	CACNNNNGTG	1 cut(s)	393
PagI	TCATGA	1 cut(s)	1207
PciSI	GCTCTTC	1 cut(s)	351
PcsI	WCGNNNNNNNCGW	1 cut(s)	282
PctI	GAATGC	2 cut(s)	559, 688
PdmI	GAANNNNTTC	3 cut(s)	79, 402, 482
PfeI	GAWTC	4 cut(s)	230, 376, 465, 995
PkrI	GCNGC	4 cut(s)	559, 769, 829, 886
Ple19I	CGATCG	1 cut(s)	938
PleI	GAGTC	2 cut(s)	1043, 1191
PluTI	GGCGCC	1 cut(s)	104
PpsI	GAGTC	2 cut(s)	1043, 1191
PspEI	GGTNACC	1 cut(s)	1028
PspFI	CCCAGC	1 cut(s)	1013
PspN4I	GGNNCC	3 cut(s)	102, 513, 1233
PspPI	GGNCC	1 cut(s)	841
PstNI	CAGNNNCTG	2 cut(s)	827, 1310
PsuI	RGATCY	2 cut(s)	400, 898
PvuI	CGATCG	1 cut(s)	938
RseI	CAYNNNNRTG	2 cut(s)	393, 546
SapI	GCTCTTC	1 cut(s)	351
SaqAI	TTAA	5 cut(s)	408, 837, 858, 915, 966
SatI	GCNGC	4 cut(s)	558, 768, 828, 885
Sau3AI	GATC	6 cut(s)	400, 536, 568, 680, 898, 935
Sau96I	GGNCC	1 cut(s)	841
SchI	GAGTC	2 cut(s)	1043, 1192
SduI	GDGCHC	2 cut(s)	62, 811
SfaNI	GCATC	5 cut(s)	298, 394, 646, 912, 1128
SfcI	CTRYAG	1 cut(s)	1311
SfoI	GGCGCC	1 cut(s)	102
SmiMI	CAYNNNNRTG	2 cut(s)	393, 546
SmlI	CTYRAG	5 cut(s)	326, 371, 455, 487, 965
SmoI	CTYRAG	5 cut(s)	326, 371, 455, 487, 965
Sse9I	AATT	7 cut(s)	179, 598, 786, 1067, 1079, 1092, 1222
SsiI	CCGC	2 cut(s)	88, 240
SspDI	GGCGCC	1 cut(s)	100
SspI	AATATT	1 cut(s)	346
SspMI	CTAG	1 cut(s)	572
StyI	CCWWGG	1 cut(s)	1241
TaaI	ACNGT	2 cut(s)	116, 961
TaiI	ACGT	1 cut(s)	192
TaqI	TCGA	1 cut(s)	92
TasI	AATT	7 cut(s)	179, 598, 786, 1067, 1079, 1092, 1222
TfiI	GAWTC	4 cut(s)	230, 376, 465, 995
Tru1I	TTAA	5 cut(s)	408, 837, 858, 915, 966
Tru9I	TTAA	5 cut(s)	408, 837, 858, 915, 966
TscAI	CASTG	3 cut(s)	121, 1015, 1134
TseFI	GTSAC	3 cut(s)	110, 350, 1028
TseI	GCWGC	4 cut(s)	557, 767, 827, 884
Tsp45I	GTSAC	3 cut(s)	110, 350, 1028
TspDTI	ATGAA	7 cut(s)	192, 237, 270, 356, 1196, 1216, 1304
TspRI	CASTG	3 cut(s)	121, 1015, 1134
Vha464I	CTTAAG	1 cut(s)	965
XapI	RAATTY	4 cut(s)	179, 598, 1079, 1222
XmnI	GAANNNNTTC	3 cut(s)	79, 402, 482
XspI	CTAG	1 cut(s)	572
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.