Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0002510

Physical Location & Seq

Genomic Coordinates Reverse (-)

37723341 .. 37727420

Gene Structure 4080 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G016980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGATATTCGGCATGAAGAGCAAGATATTCTCAAGAATCTAAAGCATCACAAGGGTGAAGATCTTCTTAAAGGTCAAGCACTGAAGAACCAAAAGGCTATCTGGGACAAAACTCTTGAGTTCAGATTCTTGCTTCAGAAAGCATTCTCAAGTTCAAATAGATTACCACAGGAGCCAGTTAGGTCTCTGTTCTGTGGATCACATGAGGATGTGAATGCAGCATATTCCGATCTAGTTACATCATCAAAGAAAACTTTGAATTCTCTTCTGGAACTGCAAGAGGCTTTGGTTGAAAAGAACCCATCTATCACACAAGATGCAACAACTGGTAACTCTGGACGATCTAAGCATTCAGAACCATCTAAGAACATTGGTGTTGATGGTGATGAGGATTGGTCAAGGATTTCTAACTGGCTTTCAAGAATAGCTACTTTCAGAAATAAAGAAATTGACAAATGGCAAACGAGGGCACAGGTCAACACAGGTGCTGCTTCTATTAAAGGCCGACTACAAGCTTTTAATCAGAGTATTAGCCAACAAGTTGCTGCCTATATGAGAGATCCAAGCAGAATGGTTAGGCAGATGCAGATGAGGCGATCAGCAGTTGGTGTATTTGGGACTGTTCTTAAGGGGAAGGATACTTCGAAGGGAGAGGAATCGCAATCTGATGCTGCTGCCCAAGCTGATGGTGACCCTGAACTTTTGGATGACTCGGAGTTTTACCAGCAATTACTAAAAGAATTCTTTGAGACAATTGACCCAACATCTTCTGAGACGGCCTTTTATTCACTGAAAAAGATGCAGTCTAAGAAGAGGAAGATTGTTGATAGGCGAGCCTCAAAGAGTCGTAAGATAAGGTATAATGTTCATGAGAAGATTGTAAATTTCATGGCTCCAGAGCCTAGGGTTCTTCCTCCTATGTTCCCTGACCTCACTTGTTTGTTCGGAATGAAGAACTCAAAACCAGCTTCTGTAGTGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AATF-Che1 TRAUB

Protein Analysis

327

Amino Acids

37.06

Weight (kDa)

9.36

Isoelectric Point (pI)

49.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AATF-Che1	PF13339	21 - 156	1.6e-30	Apoptosis antagonizing transcription factor
TRAUB	PF08164	241 - 302	1.1e-20	Apoptosis-antagonizing transcription factor, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61330 AT5G61330 AT5G61330
fragaria_vesca	FvH4_7g09370 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810
malus_domestica	MD02G1217000.v1.1 MD02G1263900.v1.1 MD02G1264000.v1.1 MD07G1073400.v1.1 MD07G1101900.v1.1 MD07G1102000.v1.1 MD07G1102300.v1.1 MD07G1103300.v1.1 MD08G1040900.v1.1
prunus_persica	Prupe.2G127200_v2.0.a1 Prupe.2G127200_v2.0.a1 Prupe.2G127200_v2.0.a1 Prupe.2G127200_v2.0.a1
pyrus_communis	pycom02g17860 pycom07g05740 pycom07g05770 pycom07g08340
rosa_chinensis	RchiOBHm_Chr1g0346971
rosa_laevigata	RLG00000028767
rosa_multiflora	Rmu_co8367419.1_g000001 Rmu_sc0001731.1_g000013 Rmu_sc0002705.1_g000017 Rmu_sc0008581.1_g000020
rosa_roxburghii	Rroxscaffold_4G00308010
rosa_samantha	Rh1AG202700 Rh1BG168600 Rh1BG168700 Rh1CG187400 Rh1DG199300 Rh1DG199400
rosa_wichuraiana	Rw1G016980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	205, 554
AcsI	RAATTY	3 cut(s)	259, 740, 883
AcuI	CTGAAG	2 cut(s)	104, 119
AflII	CTTAAG	1 cut(s)	626
AgsI	TTSAA	4 cut(s)	156, 259, 293, 420
AleI	CACNNNNGTG	1 cut(s)	54
AluBI	AGCT	4 cut(s)	428, 515, 683, 968
AluI	AGCT	4 cut(s)	428, 515, 683, 968
Alw26I	GTCTC	3 cut(s)	189, 743, 767
AlwI	GGATC	2 cut(s)	205, 554
AlwNI	CAGNNNCTG	2 cut(s)	488, 971
AoxI	GGCC	2 cut(s)	502, 777
ApeKI	GCWGC	5 cut(s)	218, 488, 545, 671, 674
ApoI	RAATTY	3 cut(s)	259, 740, 883
Asp700I	GAANNNNTTC	2 cut(s)	63, 143
AspA2I	CCTAGG	1 cut(s)	902
AsuHPI	GGTGA	3 cut(s)	68, 395, 701
AsuII	TTCGAA	1 cut(s)	644
AvrII	CCTAGG	1 cut(s)	902
BaeGI	GKGCMC	1 cut(s)	472
BbvI	GCAGC	5 cut(s)	230, 475, 532, 658, 661
BccI	CCATC	4 cut(s)	310, 367, 374, 680
BceAI	ACGGC	1 cut(s)	792
BciVI	GTATCC	1 cut(s)	631
BcoDI	GTCTC	3 cut(s)	189, 743, 767
BfaI	CTAG	2 cut(s)	233, 903
BfmI	CTRYAG	1 cut(s)	972
BfrI	CTTAAG	1 cut(s)	626
BfuI	GTATCC	1 cut(s)	631
BglII	AGATCT	1 cut(s)	61
BisI	GCNGC	5 cut(s)	219, 489, 546, 672, 675
BlnI	CCTAGG	1 cut(s)	902
BlsI	GCNGC	5 cut(s)	220, 490, 547, 673, 676
BmiI	GGNNCC	2 cut(s)	174, 894
BmsI	GCATC	5 cut(s)	55, 307, 573, 658, 789
BpmI	CTGGAG	1 cut(s)	879
Bpu14I	TTCGAA	1 cut(s)	644
BpuEI	CTTGAG	3 cut(s)	17, 133, 137
BsaI	GGTCTC	1 cut(s)	189
BsaJI	CCNNGG	1 cut(s)	902
Bse1I	ACTGG	3 cut(s)	176, 331, 416
BseDI	CCNNGG	1 cut(s)	902
BseGI	GGATG	2 cut(s)	214, 712
BseMII	CTCAG	1 cut(s)	762
BseNI	ACTGG	3 cut(s)	176, 331, 416
BseSI	GKGCMC	1 cut(s)	472
BseXI	GCAGC	5 cut(s)	230, 475, 532, 658, 661
BshFI	GGCC	2 cut(s)	504, 779
BslFI	GGGAC	2 cut(s)	119, 631
BsmAI	GTCTC	3 cut(s)	189, 743, 767
BsmBI	CGTCTC	1 cut(s)	767
BsmFI	GGGAC	2 cut(s)	119, 631
BsmI	GAATGC	3 cut(s)	143, 220, 349
BsnI	GGCC	2 cut(s)	504, 779
Bso31I	GGTCTC	1 cut(s)	189
Bsp119I	TTCGAA	1 cut(s)	644
Bsp1286I	GDGCHC	1 cut(s)	472
Bsp143I	GATC	6 cut(s)	61, 197, 229, 341, 559, 596
BspANI	GGCC	2 cut(s)	504, 779
BspCNI	CTCAG	1 cut(s)	763
BspHI	TCATGA	1 cut(s)	868
BspLI	GGNNCC	2 cut(s)	174, 894
BspPI	GGATC	2 cut(s)	205, 554
BspQI	GCTCTTC	1 cut(s)	12
BspT104I	TTCGAA	1 cut(s)	644
BspTI	CTTAAG	1 cut(s)	626
BspTNI	GGTCTC	1 cut(s)	189
BsrI	ACTGG	3 cut(s)	176, 331, 416
BssECI	CCNNGG	1 cut(s)	902
BssMI	GATC	6 cut(s)	61, 197, 229, 341, 559, 596
BssT1I	CCWWGG	1 cut(s)	902
Bst4CI	ACNGT	1 cut(s)	622
Bst6I	CTCTTC	3 cut(s)	12, 270, 806
BstAFI	CTTAAG	1 cut(s)	626
BstBI	TTCGAA	1 cut(s)	644
BstC8I	GCNNGC	1 cut(s)	834
BstDEI	CTNAG	4 cut(s)	345, 363, 771, 807
BstEII	GGTNACC	1 cut(s)	689
BstF5I	GGATG	2 cut(s)	214, 712
BstKTI	GATC	6 cut(s)	64, 200, 232, 344, 562, 599
BstMAI	GTCTC	3 cut(s)	189, 743, 767
BstMBI	GATC	6 cut(s)	61, 197, 229, 341, 559, 596
BstMWI	GCNNNNNNNGC	3 cut(s)	19, 592, 680
BstPI	GGTNACC	1 cut(s)	689
BstSFI	CTRYAG	1 cut(s)	972
BstSLI	GKGCMC	1 cut(s)	472
BstV1I	GCAGC	5 cut(s)	230, 475, 532, 658, 661
BstX2I	RGATCY	2 cut(s)	61, 559
BstXI	CCANNNNNNTGG	1 cut(s)	686
BstYI	RGATCY	2 cut(s)	61, 559
BsuI	GTATCC	1 cut(s)	631
BsuRI	GGCC	2 cut(s)	504, 779
BtsCI	GGATG	2 cut(s)	214, 712
BtsIMutI	CAGTG	2 cut(s)	80, 788
Cac8I	GCNNGC	1 cut(s)	834
CaiI	CAGNNNCTG	2 cut(s)	488, 971
CciI	TCATGA	1 cut(s)	868
CviAII	CATG	4 cut(s)	14, 203, 869, 889
DdeI	CTNAG	4 cut(s)	345, 363, 771, 807
DpnI	GATC	6 cut(s)	63, 199, 231, 343, 561, 598
DpnII	GATC	6 cut(s)	61, 197, 229, 341, 559, 596
Eam1104I	CTCTTC	3 cut(s)	12, 270, 806
EarI	CTCTTC	3 cut(s)	12, 270, 806
Eco130I	CCWWGG	1 cut(s)	902
Eco31I	GGTCTC	1 cut(s)	189
Eco57I	CTGAAG	2 cut(s)	104, 119
Eco91I	GGTNACC	1 cut(s)	689
EcoO65I	GGTNACC	1 cut(s)	689
EcoRI	GAATTC	2 cut(s)	259, 740
EcoT14I	CCWWGG	1 cut(s)	902
ErhI	CCWWGG	1 cut(s)	902
Esp3I	CGTCTC	1 cut(s)	767
FaeI	CATG	4 cut(s)	17, 206, 872, 892
FaiI	YATR	9 cut(s)	15, 204, 223, 552, 554, 861, 870, 890, 920
FalI	AAGNNNNNCTT	2 cut(s)	51, 83
FaqI	GGGAC	2 cut(s)	119, 631
FatI	CATG	4 cut(s)	13, 202, 868, 888
Fnu4HI	GCNGC	5 cut(s)	219, 489, 546, 672, 675
FokI	GGATG	2 cut(s)	221, 719
Fsp4HI	GCNGC	5 cut(s)	219, 489, 546, 672, 675
FspBI	CTAG	2 cut(s)	233, 903
GluI	GCNGC	5 cut(s)	219, 489, 546, 672, 675
GsuI	CTGGAG	1 cut(s)	879
HaeIII	GGCC	2 cut(s)	504, 779
Hin1II	CATG	4 cut(s)	17, 206, 872, 892
HincII	GTYRAC	1 cut(s)	478
HindII	GTYRAC	1 cut(s)	478
HindIII	AAGCTT	1 cut(s)	513
HinfI	GANTC	5 cut(s)	37, 126, 656, 710, 844
HphI	GGTGA	3 cut(s)	68, 395, 701
Hpy166II	GTNNAC	1 cut(s)	478
Hpy188III	TCNNGA	7 cut(s)	34, 116, 269, 336, 420, 869, 896
Hpy8I	GTNNAC	1 cut(s)	478
HpyAV	CCTTC	2 cut(s)	628, 640
HpyCH4III	ACNGT	1 cut(s)	622
HpyCH4V	TGCA	6 cut(s)	218, 277, 320, 586, 802, 979
HpyF10VI	GCNNNNNNNGC	3 cut(s)	19, 592, 680
HpyF3I	CTNAG	4 cut(s)	345, 363, 771, 807
Hsp92II	CATG	4 cut(s)	17, 206, 872, 892
Kzo9I	GATC	6 cut(s)	61, 197, 229, 341, 559, 596
LguI	GCTCTTC	1 cut(s)	12
LmnI	GCTCC	2 cut(s)	172, 898
Lsp1109I	GCAGC	5 cut(s)	230, 475, 532, 658, 661
LweI	GCATC	5 cut(s)	55, 307, 573, 658, 789
MaeI	CTAG	2 cut(s)	233, 903
MaeIII	GTNAC	3 cut(s)	235, 329, 689
MalI	GATC	6 cut(s)	63, 199, 231, 343, 561, 598
MboI	GATC	6 cut(s)	61, 197, 229, 341, 559, 596
MfeI	CAATTG	1 cut(s)	753
MflI	RGATCY	2 cut(s)	61, 559
MhlI	GDGCHC	1 cut(s)	472
MluCI	AATT	6 cut(s)	259, 447, 728, 740, 753, 883
MlyI	GAGTC	2 cut(s)	704, 853
MroXI	GAANNNNTTC	2 cut(s)	63, 143
MseI	TTAA	4 cut(s)	69, 498, 519, 627
MslI	CAYNNNNRTG	2 cut(s)	54, 207
MspCI	CTTAAG	1 cut(s)	626
MunI	CAATTG	1 cut(s)	753
Mva1269I	GAATGC	3 cut(s)	143, 220, 349
MwoI	GCNNNNNNNGC	3 cut(s)	19, 592, 680
NdeII	GATC	6 cut(s)	61, 197, 229, 341, 559, 596
NlaIII	CATG	4 cut(s)	17, 206, 872, 892
NlaIV	GGNNCC	2 cut(s)	174, 894
NmuCI	GTSAC	1 cut(s)	689
NspV	TTCGAA	1 cut(s)	644
OliI	CACNNNNGTG	1 cut(s)	54
PagI	TCATGA	1 cut(s)	868
PciSI	GCTCTTC	1 cut(s)	12
PctI	GAATGC	3 cut(s)	143, 220, 349
PdmI	GAANNNNTTC	2 cut(s)	63, 143
PfeI	GAWTC	3 cut(s)	37, 126, 656
PkrI	GCNGC	5 cut(s)	220, 490, 547, 673, 676
PleI	GAGTC	2 cut(s)	704, 852
PpsI	GAGTC	2 cut(s)	704, 852
PspEI	GGTNACC	1 cut(s)	689
PspN4I	GGNNCC	2 cut(s)	174, 894
PstNI	CAGNNNCTG	2 cut(s)	488, 971
PsuI	RGATCY	2 cut(s)	61, 559
RseI	CAYNNNNRTG	2 cut(s)	54, 207
SapI	GCTCTTC	1 cut(s)	12
SaqAI	TTAA	4 cut(s)	69, 498, 519, 627
SatI	GCNGC	5 cut(s)	219, 489, 546, 672, 675
Sau3AI	GATC	6 cut(s)	61, 197, 229, 341, 559, 596
SchI	GAGTC	2 cut(s)	704, 853
SduI	GDGCHC	1 cut(s)	472
SfaNI	GCATC	5 cut(s)	55, 307, 573, 658, 789
SfcI	CTRYAG	1 cut(s)	972
SfuI	TTCGAA	1 cut(s)	644
SmiMI	CAYNNNNRTG	2 cut(s)	54, 207
SmlI	CTYRAG	4 cut(s)	32, 116, 148, 626
SmoI	CTYRAG	4 cut(s)	32, 116, 148, 626
Sse9I	AATT	6 cut(s)	259, 447, 728, 740, 753, 883
SspMI	CTAG	2 cut(s)	233, 903
StyI	CCWWGG	1 cut(s)	902
TaaI	ACNGT	1 cut(s)	622
TaqI	TCGA	1 cut(s)	644
TasI	AATT	6 cut(s)	259, 447, 728, 740, 753, 883
TfiI	GAWTC	3 cut(s)	37, 126, 656
Tru1I	TTAA	4 cut(s)	69, 498, 519, 627
Tru9I	TTAA	4 cut(s)	69, 498, 519, 627
TscAI	CASTG	2 cut(s)	87, 795
TseFI	GTSAC	1 cut(s)	689
TseI	GCWGC	5 cut(s)	218, 488, 545, 671, 674
Tsp45I	GTSAC	1 cut(s)	689
TspDTI	ATGAA	4 cut(s)	30, 857, 877, 965
TspRI	CASTG	2 cut(s)	87, 795
Vha464I	CTTAAG	1 cut(s)	626
XapI	RAATTY	3 cut(s)	259, 740, 883
XmaJI	CCTAGG	1 cut(s)	902
XmnI	GAANNNNTTC	2 cut(s)	63, 143
XspI	CTAG	2 cut(s)	233, 903

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.