Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0002510

Physical Location & Seq

Genomic Coordinates Forward (+)

24879952 .. 24885506

Gene Structure 5555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1217000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1347 bp

ATGCTTAAACCCCAAAACCCAAACCCTGCCGCCGCTGCTTCGCGGACTTGTCTCCGCCACTCTTCAACCCTCGCTGTCTTCCTTCTTCCCTCCTCCTTCTTTCAGCTTCAAAAGGGGTCAGGCGTCACAATGGGGAGGAAGGCTCGTCACAGTGACAGTGAGTTTGAGAACGATGGTGATTTCGACAGCGATGAGCTGAATATGGAGCAGGAAGAGGATGACTTTGATGATGAGCACCACGGTGAGGAGGAGGAAGAAGAATCAGAAAATGAGGAAGAAGATGGACAAGTAGATGGGGAAGAGGAAAATGGTGATGGGAAAAACGATAATAAAGATGCCGAGATGGAAGAACTCGAGAAAGAATACATGAATCTTCGTCATCAGGAGCAAGATATTTTAAAGAATCTAAAGCGTCATAAGGACGAAGATCTTCTTAAAGGTCAAGCAGTGAAGAACCAAAAGGCTCTTTGGGACAAAGCTCTTGAGTTCAGATTCTTGCTTCAGAAAGCATTCTCAAATTCAAATAGATTACCACAGGAGCCAGTTAGGTCTTTATTTTGTGATTCACATCAGGGTGTCAGTACAGCATATTCTGATCTAGTTGACTCATCAAAGCAAATTTTGGATTCTCTAGCAGAACTACAAGAGGCTCTACTTGAGAAGAACCCATCCATCGTTCAAGCAACAGATAGTAAATCTGGACAATCTAAGAAGTCAGACTCATCTAAGAACATTGACGGTGATGGTGATGAGGATTGGTCACGGATTTCTCAGTTGCTGTCGAGAATAGCTACCTTCAGAGACAAATCCATCAATAAATGGCAGAGGAAGACAGAGGTGACCACAGGTGCTGCTGCTATTAAAAGCAAACTGCATGCTTTTAATCAGAATATTAGTGAACAAGTTGCTTCTTATATGAGAGATCCTAGCAGAATGGTTAGGCAGATGCAGATGAGGAAATCAGCAGTTTCTGTATTTGGCGCTGTTCCTGAGGAGAAAAATACTGCAAAGGGGGAGGAGACACAATCTGAAGCTGGTGCACAAGCTGATGGTGACCCTGAACTTTTGGATGACTCTGAGTTTTACCAGCAGTTACTGAAAGAATTTTTTGAGACAATTGACCCAGCATCTTCTGAGACAGCCTTTTATTCTTTGAAAAAGTTGCATACAAAGAAGAGGAAGATTGTTGACAGAAGAGCCTCTAAGAGTCGCAAGATAAGGTACAATGTTCACGAGAAGATAGTAAATTTCATGGCCCCAGAGACTATGGCCGTTCCTCCTCCGATGCTTCCTGACCTCAATAATTTGTTCGGGTTGAAGAAGCAAAAACCAGCTTCCGTAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AATF-Che1 TRAUB

Protein Analysis

449

Amino Acids

50.72

Weight (kDa)

5.04

Isoelectric Point (pI)

56.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AATF-Che1	PF13339	143 - 277	5.7e-33	Apoptosis antagonizing transcription factor
TRAUB	PF08164	362 - 422	1.1e-19	Apoptosis-antagonizing transcription factor, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61330 AT5G61330 AT5G61330
fragaria_vesca	FvH4_7g09370 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810
malus_domestica	MD02G1217000.v1.1 MD02G1263900.v1.1 MD02G1264000.v1.1 MD07G1073400.v1.1 MD07G1101900.v1.1 MD07G1102000.v1.1 MD07G1102300.v1.1 MD07G1103300.v1.1 MD08G1040900.v1.1
prunus_persica	Prupe.2G127200_v2.0.a1 Prupe.2G127200_v2.0.a1 Prupe.2G127200_v2.0.a1 Prupe.2G127200_v2.0.a1
pyrus_communis	pycom02g17860 pycom07g05740 pycom07g05770 pycom07g08340
rosa_chinensis	RchiOBHm_Chr1g0346971
rosa_laevigata	RLG00000028767
rosa_multiflora	Rmu_co8367419.1_g000001 Rmu_sc0001731.1_g000013 Rmu_sc0002705.1_g000017 Rmu_sc0008581.1_g000020
rosa_roxburghii	Rroxscaffold_4G00308010
rosa_samantha	Rh1AG202700 Rh1BG168600 Rh1BG168700 Rh1CG187400 Rh1DG199300 Rh1DG199400
rosa_wichuraiana	Rw1G016980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	43
AciI	CCGC	4 cut(s)	30, 33, 43, 55
AclWI	GGATC	1 cut(s)	917
AcoI	YGGCCR	1 cut(s)	1269
AcsI	RAATTY	4 cut(s)	517, 618, 1103, 1246
AcuI	CTGAAG	3 cut(s)	485, 781, 1050
AcyI	GRCGYC	1 cut(s)	123
AfaI	GTAC	2 cut(s)	583, 1223
AfiI	CCNNNNNNNGG	1 cut(s)	244
AgsI	TTSAA	6 cut(s)	66, 110, 522, 680, 1156, 1318
AleI	CACNNNNGTG	1 cut(s)	240
AluBI	AGCT	7 cut(s)	106, 196, 479, 791, 1034, 1046, 1334
AluI	AGCT	7 cut(s)	106, 196, 479, 791, 1034, 1046, 1334
Alw21I	GWGCWC	2 cut(s)	237, 1042
Alw26I	GTCTC	6 cut(s)	56, 795, 1013, 1106, 1130, 1256
Alw44I	GTGCAC	1 cut(s)	1038
AlwI	GGATC	1 cut(s)	917
AlwNI	CAGNNNCTG	4 cut(s)	778, 851, 971, 1096
Ama87I	CYCGRG	1 cut(s)	353
AoxI	GGCC	2 cut(s)	1254, 1269
ApaLI	GTGCAC	1 cut(s)	1038
ApeKI	GCWGC	3 cut(s)	35, 851, 854
ApoI	RAATTY	4 cut(s)	517, 618, 1103, 1246
ArsI	GACNNNNNNTTYG	2 cut(s)	146, 178
Asp700I	GAANNNNTTC	2 cut(s)	429, 509
AspLEI	GCGC	1 cut(s)	983
AspS9I	GGNCC	1 cut(s)	1255
AsuHPI	GGTGA	7 cut(s)	188, 254, 323, 752, 758, 850, 1064
AvaI	CYCGRG	1 cut(s)	353
AxyI	CCTNAGG	1 cut(s)	990
BaeGI	GKGCMC	1 cut(s)	1042
BauI	CACGAG	1 cut(s)	1232
BbsI	GAAGAC	2 cut(s)	70, 836
Bbv12I	GWGCWC	2 cut(s)	237, 1042
BbvI	GCAGC	3 cut(s)	22, 838, 841
BceAI	ACGGC	1 cut(s)	1256
BcoDI	GTCTC	6 cut(s)	56, 795, 1013, 1106, 1130, 1256
BfaI	CTAG	3 cut(s)	599, 632, 927
BfoI	RGCGCY	1 cut(s)	984
BglII	AGATCT	1 cut(s)	427
BisI	GCNGC	5 cut(s)	30, 33, 36, 852, 855
BlsI	GCNGC	5 cut(s)	31, 34, 37, 853, 856
BmeT110I	CYCGRG	1 cut(s)	353
BmgT120I	GGNCC	1 cut(s)	1255
BmiI	GGNNCC	2 cut(s)	540, 1257
BmsI	GCATC	4 cut(s)	325, 936, 1136, 1275
BpiI	GAAGAC	2 cut(s)	70, 836
BplI	GAGNNNNNCTC	2 cut(s)	127, 159
BpuEI	CTTGAG	2 cut(s)	503, 677
BsaBI	GATNNNNATC	1 cut(s)	567
BsaHI	GRCGYC	1 cut(s)	123
BsaJI	CCNNGG	1 cut(s)	238
Bsc4I	CCNNNNNNNGG	1 cut(s)	244
Bse1I	ACTGG	1 cut(s)	542
Bse21I	CCTNAGG	1 cut(s)	990
Bse8I	GATNNNNATC	1 cut(s)	567
BseDI	CCNNGG	1 cut(s)	238
BseGI	GGATG	3 cut(s)	223, 668, 1075
BseJI	GATNNNNATC	1 cut(s)	567
BseLI	CCNNNNNNNGG	1 cut(s)	244
BseMII	CTCAG	4 cut(s)	785, 981, 1068, 1125
BseNI	ACTGG	1 cut(s)	542
BseRI	GAGGAG	6 cut(s)	82, 260, 263, 1007, 1031, 1269
BseSI	GKGCMC	1 cut(s)	1042
BseXI	GCAGC	3 cut(s)	22, 838, 841
BseYI	CCCAGC	1 cut(s)	1123
Bsh1236I	CGCG	1 cut(s)	43
BshFI	GGCC	2 cut(s)	1256, 1271
BsiHKAI	GWGCWC	2 cut(s)	237, 1042
BsiHKCI	CYCGRG	1 cut(s)	353
BslFI	GGGAC	1 cut(s)	485
BslI	CCNNNNNNNGG	1 cut(s)	244
BsmAI	GTCTC	6 cut(s)	56, 795, 1013, 1106, 1130, 1256
BsmFI	GGGAC	1 cut(s)	485
BsmI	GAATGC	1 cut(s)	509
BsnI	GGCC	2 cut(s)	1256, 1271
BsoBI	CYCGRG	1 cut(s)	353
Bsp1286I	GDGCHC	2 cut(s)	237, 1042
Bsp143I	GATC	3 cut(s)	427, 595, 922
BspACI	CCGC	4 cut(s)	30, 33, 43, 55
BspANI	GGCC	2 cut(s)	1256, 1271
BspCNI	CTCAG	4 cut(s)	784, 982, 1069, 1126
BspFNI	CGCG	1 cut(s)	43
BspLI	GGNNCC	2 cut(s)	540, 1257
BspPI	GGATC	1 cut(s)	917
BspQI	GCTCTTC	1 cut(s)	1189
BsrI	ACTGG	1 cut(s)	542
BssECI	CCNNGG	1 cut(s)	238
BssMI	GATC	3 cut(s)	427, 595, 922
BssNI	GRCGYC	1 cut(s)	123
BssSI	CACGAG	1 cut(s)	1232
Bst2BI	CACGAG	1 cut(s)	1232
Bst4CI	ACNGT	4 cut(s)	152, 158, 242, 740
Bst6I	CTCTTC	5 cut(s)	67, 207, 294, 1169, 1189
BstACI	GRCGYC	1 cut(s)	123
BstC8I	GCNNGC	1 cut(s)	876
BstDEI	CTNAG	7 cut(s)	708, 726, 771, 990, 1077, 1134, 1203
BstDSI	CCRYGG	1 cut(s)	238
BstEII	GGTNACC	2 cut(s)	838, 1052
BstF5I	GGATG	3 cut(s)	223, 668, 1075
BstFNI	CGCG	1 cut(s)	43
BstH2I	RGCGCY	1 cut(s)	984
BstHHI	GCGC	1 cut(s)	983
BstKTI	GATC	3 cut(s)	430, 598, 925
BstMAI	GTCTC	6 cut(s)	56, 795, 1013, 1106, 1130, 1256
BstMBI	GATC	3 cut(s)	427, 595, 922
BstMWI	GCNNNNNNNGC	1 cut(s)	35
BstNSI	RCATGY	1 cut(s)	878
BstPI	GGTNACC	2 cut(s)	838, 1052
BstSLI	GKGCMC	1 cut(s)	1042
BstUI	CGCG	1 cut(s)	43
BstV1I	GCAGC	3 cut(s)	22, 838, 841
BstV2I	GAAGAC	2 cut(s)	70, 836
BstX2I	RGATCY	2 cut(s)	427, 922
BstYI	RGATCY	2 cut(s)	427, 922
Bsu36I	CCTNAGG	1 cut(s)	990
BsuRI	GGCC	2 cut(s)	1256, 1271
BtgI	CCRYGG	1 cut(s)	238
BtgZI	GCGATG	1 cut(s)	204
BtsCI	GGATG	3 cut(s)	223, 668, 1075
BtsI	GCAGTG	1 cut(s)	453
BtsIMutI	CAGTG	3 cut(s)	157, 163, 453
Cac8I	GCNNGC	1 cut(s)	876
CaiI	CAGNNNCTG	4 cut(s)	778, 851, 971, 1096
CfoI	GCGC	1 cut(s)	983
Cfr13I	GGNCC	1 cut(s)	1255
CseI	GACGC	2 cut(s)	112, 401
Csp6I	GTAC	2 cut(s)	582, 1222
CviAII	CATG	3 cut(s)	367, 875, 1252
CviQI	GTAC	2 cut(s)	582, 1222
DdeI	CTNAG	7 cut(s)	708, 726, 771, 990, 1077, 1134, 1203
DpnI	GATC	3 cut(s)	429, 597, 924
DpnII	GATC	3 cut(s)	427, 595, 922
DraI	TTTAAA	1 cut(s)	399
EaeI	YGGCCR	1 cut(s)	1269
Eam1104I	CTCTTC	5 cut(s)	67, 207, 294, 1169, 1189
EarI	CTCTTC	5 cut(s)	67, 207, 294, 1169, 1189
EciI	GGCGGA	1 cut(s)	44
Eco57I	CTGAAG	3 cut(s)	485, 781, 1050
Eco81I	CCTNAGG	1 cut(s)	990
Eco88I	CYCGRG	1 cut(s)	353
Eco91I	GGTNACC	2 cut(s)	838, 1052
EcoO65I	GGTNACC	2 cut(s)	838, 1052
FaeI	CATG	3 cut(s)	370, 878, 1255
FalI	AAGNNNNNCTT	2 cut(s)	417, 449
FaqI	GGGAC	1 cut(s)	485
FatI	CATG	3 cut(s)	366, 874, 1251
Fnu4HI	GCNGC	5 cut(s)	30, 33, 36, 852, 855
FokI	GGATG	3 cut(s)	230, 655, 1082
Fsp4HI	GCNGC	5 cut(s)	30, 33, 36, 852, 855
FspBI	CTAG	3 cut(s)	599, 632, 927
GlaI	GCGC	1 cut(s)	982
GluI	GCNGC	5 cut(s)	30, 33, 36, 852, 855
GsaI	CCCAGC	1 cut(s)	1127
HaeII	RGCGCY	1 cut(s)	984
HaeIII	GGCC	2 cut(s)	1256, 1271
HgaI	GACGC	2 cut(s)	112, 401
HhaI	GCGC	1 cut(s)	983
Hin1I	GRCGYC	1 cut(s)	123
Hin1II	CATG	3 cut(s)	370, 878, 1255
Hin6I	GCGC	1 cut(s)	981
HinP1I	GCGC	1 cut(s)	981
HincII	GTYRAC	2 cut(s)	604, 1189
HindII	GTYRAC	2 cut(s)	604, 1189
HphI	GGTGA	7 cut(s)	188, 254, 323, 752, 758, 850, 1064
Hpy166II	GTNNAC	5 cut(s)	604, 899, 1040, 1189, 1231
Hpy188III	TCNNGA	8 cut(s)	355, 383, 482, 699, 783, 989, 1232, 1292
Hpy8I	GTNNAC	5 cut(s)	604, 899, 1040, 1189, 1231
HpyAV	CCTTC	4 cut(s)	92, 106, 133, 805
HpyCH4III	ACNGT	4 cut(s)	152, 158, 242, 740
HpyCH4V	TGCA	5 cut(s)	874, 949, 1007, 1040, 1165
HpyF10VI	GCNNNNNNNGC	1 cut(s)	35
HpyF3I	CTNAG	7 cut(s)	708, 726, 771, 990, 1077, 1134, 1203
Hsp92I	GRCGYC	1 cut(s)	123
Hsp92II	CATG	3 cut(s)	370, 878, 1255
HspAI	GCGC	1 cut(s)	981
Kzo9I	GATC	3 cut(s)	427, 595, 922
LguI	GCTCTTC	1 cut(s)	1189
LmnI	GCTCC	3 cut(s)	205, 385, 538
Lsp1109I	GCAGC	3 cut(s)	22, 838, 841
LweI	GCATC	4 cut(s)	325, 936, 1136, 1275
MaeI	CTAG	3 cut(s)	599, 632, 927
MaeIII	GTNAC	7 cut(s)	124, 146, 152, 759, 838, 1052, 1092
MalI	GATC	3 cut(s)	429, 597, 924
MboI	GATC	3 cut(s)	427, 595, 922
MfeI	CAATTG	1 cut(s)	1116
MflI	RGATCY	2 cut(s)	427, 922
MhlI	GDGCHC	2 cut(s)	237, 1042
MluCI	AATT	6 cut(s)	517, 618, 1103, 1116, 1246, 1303
MlyI	GAGTC	4 cut(s)	599, 713, 1067, 1216
MroXI	GAANNNNTTC	2 cut(s)	429, 509
MseI	TTAA	5 cut(s)	6, 398, 435, 861, 882
MslI	CAYNNNNRTG	2 cut(s)	240, 573
MspA1I	CMGCKG	1 cut(s)	35
MunI	CAATTG	1 cut(s)	1116
Mva1269I	GAATGC	1 cut(s)	509
MvnI	CGCG	1 cut(s)	43
MwoI	GCNNNNNNNGC	1 cut(s)	35
NdeII	GATC	3 cut(s)	427, 595, 922
NlaIII	CATG	3 cut(s)	370, 878, 1255
NlaIV	GGNNCC	2 cut(s)	540, 1257
NmeAIII	GCCGAG	1 cut(s)	364
NmuCI	GTSAC	6 cut(s)	124, 146, 152, 759, 838, 1052
NspI	RCATGY	1 cut(s)	878
OliI	CACNNNNGTG	1 cut(s)	240
PaeI	GCATGC	1 cut(s)	878
PaeR7I	CTCGAG	1 cut(s)	353
PciSI	GCTCTTC	1 cut(s)	1189
PctI	GAATGC	1 cut(s)	509
PdmI	GAANNNNTTC	2 cut(s)	429, 509
PfeI	GAWTC	6 cut(s)	260, 370, 403, 492, 563, 626
PkrI	GCNGC	5 cut(s)	31, 34, 37, 853, 856
PleI	GAGTC	4 cut(s)	599, 713, 1067, 1215
PpsI	GAGTC	4 cut(s)	599, 713, 1067, 1215
PspEI	GGTNACC	2 cut(s)	838, 1052
PspFI	CCCAGC	1 cut(s)	1123
PspN4I	GGNNCC	2 cut(s)	540, 1257
PspPI	GGNCC	1 cut(s)	1255
PstNI	CAGNNNCTG	4 cut(s)	778, 851, 971, 1096
PsuI	RGATCY	2 cut(s)	427, 922
RsaI	GTAC	2 cut(s)	583, 1223
RsaNI	GTAC	2 cut(s)	582, 1222
RseI	CAYNNNNRTG	2 cut(s)	240, 573
SapI	GCTCTTC	1 cut(s)	1189
SaqAI	TTAA	5 cut(s)	6, 398, 435, 861, 882
SatI	GCNGC	5 cut(s)	30, 33, 36, 852, 855
Sau3AI	GATC	3 cut(s)	427, 595, 922
Sau96I	GGNCC	1 cut(s)	1255
SchI	GAGTC	4 cut(s)	599, 713, 1067, 1216
SduI	GDGCHC	2 cut(s)	237, 1042
SfaNI	GCATC	4 cut(s)	325, 936, 1136, 1275
Sfr274I	CTCGAG	1 cut(s)	353
SlaI	CTCGAG	1 cut(s)	353
SmiMI	CAYNNNNRTG	2 cut(s)	240, 573
SmlI	CTYRAG	3 cut(s)	353, 482, 656
SmoI	CTYRAG	3 cut(s)	353, 482, 656
SphI	GCATGC	1 cut(s)	878
Sse9I	AATT	6 cut(s)	517, 618, 1103, 1116, 1246, 1303
SsiI	CCGC	4 cut(s)	30, 33, 43, 55
SspI	AATATT	1 cut(s)	892
SspMI	CTAG	3 cut(s)	599, 632, 927
TaaI	ACNGT	4 cut(s)	152, 158, 242, 740
TaqI	TCGA	3 cut(s)	183, 354, 782
TasI	AATT	6 cut(s)	517, 618, 1103, 1116, 1246, 1303
TatI	WGTACW	1 cut(s)	581
TauI	GCSGC	2 cut(s)	32, 35
TfiI	GAWTC	6 cut(s)	260, 370, 403, 492, 563, 626
Tru1I	TTAA	5 cut(s)	6, 398, 435, 861, 882
Tru9I	TTAA	5 cut(s)	6, 398, 435, 861, 882
TscAI	CASTG	3 cut(s)	157, 163, 453
TseFI	GTSAC	6 cut(s)	124, 146, 152, 759, 838, 1052
TseI	GCWGC	3 cut(s)	35, 851, 854
Tsp45I	GTSAC	6 cut(s)	124, 146, 152, 759, 838, 1052
TspDTI	ATGAA	2 cut(s)	383, 1240
TspGWI	ACGGA	2 cut(s)	778, 1327
TspRI	CASTG	3 cut(s)	157, 163, 453
VneI	GTGCAC	1 cut(s)	1038
XapI	RAATTY	4 cut(s)	517, 618, 1103, 1246
XceI	RCATGY	1 cut(s)	878
XhoI	CTCGAG	1 cut(s)	353
XmnI	GAANNNNTTC	2 cut(s)	429, 509
XspI	CTAG	3 cut(s)	599, 632, 927

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.