Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0002510

Physical Location & Seq

Genomic Coordinates Reverse (-)

18461656 .. 18468251

Gene Structure 6596 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G127200.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1302 bp

ATGCGAGTTAAAGTTAAAAAGGGGTTCAGAAGTCAGAAAATGGGGGTACCTTCAAAGCAGAAGAGAAAGGCTCGTGACAGTGACAGTGAGTTTGAGGATGATGACGATTTAAACAGTGACGAGCTAATGATGGAGCAAGAAGAGGATGACTTTGATGATGATCAGGAGGAGGAAGAAGAATCAGAAGATGAAGAGAATGAAGAAGAATCAGAAGATGAAGAGGATGAAGAAGAGGGGGAGGAGGAAGAGGAAAATGGTGATGGGCAAGATGATAATAAAGATGCTGAGATAGAAGAACTTGAGAAAGAATACATGAGTCTTCGTGATCAGGAGCAAGATATTTTAAAGAATCTAAAGCGTCACAAGGATGAAGATCTTCTTAAAGGTCAAGCAGTGAAGAACCAAAAGGCTCTTTGGGACAAGACTCTTGAGTTCCGATTCTTGCTTCAGAAAGCGTTCTCAAGTTCAAATAGATTACCACAGGAGCCAGTTAGGTCTTTATTTTGTGATTCACATGAGGGTGTCAATGCAGCATATTCGGATCTAGTTAACGCATCAAAAAGAACTTTGGATTCTCTAGTGGAACTAGAAGAGGCTTTACTTGAAAAGAACCCATCCATTGTTCAAGCAACAGATAGTAAATCTGCACGGTCAAAGCATTCAGAATCATCTAATAACATTGATGCTGATGGTGATGAGGACTGGTCACGGATTTCTCAGTTGCTTTCAAGCATAGCTACTTTTAGAAACAAATCAATAGACAAATGGCAGAGGAAGACACAAGTGACCACAGGTGCTGCTGCTATTAAAAGCAAGCTGCATGCTTTTAATCAGAATATCAGTGAACAAGTTGCTTCTTATATGAGAGATCCAAGCAGAATGGTTAAGCAGATGCAGATGAGGAGATCAGCAATTGGTGTATTTGGCACTATGGATGGGCAGGTTTCTGACAGGGAGAATACTCCAAAGGGAGAGGAGACACAATGTGATGCTGGTGCACAAGCTGATGGCGACCCTGAACTTTTGGATGACTCCGAGTTTTACCAGCAATTATTGAAAGAATTTTTTGAGACAATTGACCCAGCATCTTCTGAGACAGCCTTTTATTCTCTGAAAAAGTTGCAGACTAAGAAGAGGAAGATTGTGGATAGACGAGCCTCTAAGAGTCGTAAGATAAGGTATAATGTTCACGAGAAGATCGTAAATTTCATGGCTCCAGAGCCTATGACCCTTCCAACTTTGGTTCCTGACCTCAATAATTTGTTTGGGTTGAAGAACCAGAAACGAGCTTCTGTAGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AATF-Che1 TRAUB

Protein Analysis

434

Amino Acids

49.67

Weight (kDa)

4.65

Isoelectric Point (pI)

65.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61330 AT5G61330 AT5G61330
fragaria_vesca	FvH4_7g09370 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810
malus_domestica	MD02G1217000.v1.1 MD02G1263900.v1.1 MD02G1264000.v1.1 MD07G1073400.v1.1 MD07G1101900.v1.1 MD07G1102000.v1.1 MD07G1102300.v1.1 MD07G1103300.v1.1 MD08G1040900.v1.1
prunus_persica	Prupe.2G127200_v2.0.a1 Prupe.2G127200_v2.0.a1 Prupe.2G127200_v2.0.a1 Prupe.2G127200_v2.0.a1
pyrus_communis	pycom02g17860 pycom07g05740 pycom07g05770 pycom07g08340
rosa_chinensis	RchiOBHm_Chr1g0346971
rosa_laevigata	RLG00000028767
rosa_multiflora	Rmu_co8367419.1_g000001 Rmu_sc0001731.1_g000013 Rmu_sc0002705.1_g000017 Rmu_sc0008581.1_g000020
rosa_roxburghii	Rroxscaffold_4G00308010
rosa_samantha	Rh1AG202700 Rh1BG168600 Rh1BG168700 Rh1CG187400 Rh1DG199300 Rh1DG199400
rosa_wichuraiana	Rw1G016980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	931
Acc65I	GGTACC	1 cut(s)	46
AccB1I	GGYRCC	1 cut(s)	46
AclWI	GGATC	2 cut(s)	549, 863
AcsI	RAATTY	2 cut(s)	1061, 1204
AcuI	CTGAAG	1 cut(s)	431
AdeI	CACNNNGTG	1 cut(s)	986
AfaI	GTAC	1 cut(s)	48
AgsI	TTSAA	7 cut(s)	54, 468, 605, 626, 729, 1057, 1273
AluBI	AGCT	5 cut(s)	124, 737, 817, 1004, 1289
AluI	AGCT	5 cut(s)	124, 737, 817, 1004, 1289
Alw21I	GWGCWC	1 cut(s)	1000
Alw26I	GTCTC	3 cut(s)	971, 1064, 1088
Alw44I	GTGCAC	1 cut(s)	996
AlwI	GGATC	2 cut(s)	549, 863
AlwNI	CAGNNNCTG	1 cut(s)	797
ApaLI	GTGCAC	1 cut(s)	996
ApeKI	GCWGC	4 cut(s)	530, 797, 800, 817
ApoI	RAATTY	2 cut(s)	1061, 1204
ArsI	GACNNNNNNTTYG	2 cut(s)	74, 106
Asp700I	GAANNNNTTC	2 cut(s)	375, 455
Asp718I	GGTACC	1 cut(s)	46
AsuHPI	GGTGA	2 cut(s)	269, 704
BaeGI	GKGCMC	1 cut(s)	1000
BanI	GGYRCC	1 cut(s)	46
BarI	GAAGNNNNNNTAC	2 cut(s)	582, 614
BauI	CACGAG	2 cut(s)	72, 1190
BbsI	GAAGAC	2 cut(s)	311, 782
Bbv12I	GWGCWC	1 cut(s)	1000
BbvI	GCAGC	4 cut(s)	542, 784, 787, 804
BccI	CCATC	6 cut(s)	124, 254, 622, 683, 929, 1001
BcgI	CGANNNNNNTGC	2 cut(s)	519, 553
BclI	TGATCA	2 cut(s)	160, 325
BcoDI	GTCTC	3 cut(s)	971, 1064, 1088
BfaI	CTAG	3 cut(s)	545, 578, 587
BfmI	CTRYAG	1 cut(s)	1293
BfuAI	ACCTGC	1 cut(s)	931
BglII	AGATCT	1 cut(s)	373
BisI	GCNGC	4 cut(s)	531, 798, 801, 818
BlsI	GCNGC	4 cut(s)	532, 799, 802, 819
BmiI	GGNNCC	4 cut(s)	48, 486, 1215, 1245
BmsI	GCATC	6 cut(s)	271, 563, 673, 882, 979, 1094
BpiI	GAAGAC	2 cut(s)	311, 782
BplI	GAGNNNNNCTC	2 cut(s)	55, 87
BpmI	CTGGAG	1 cut(s)	1200
BpuEI	CTTGAG	3 cut(s)	320, 445, 449
BsaBI	GATNNNNATC	2 cut(s)	159, 372
Bse1I	ACTGG	2 cut(s)	488, 707
Bse8I	GATNNNNATC	2 cut(s)	159, 372
BseGI	GGATG	7 cut(s)	103, 151, 229, 373, 614, 940, 1033
BseJI	GATNNNNATC	2 cut(s)	159, 372
BseMII	CTCAG	3 cut(s)	276, 731, 1083
BseNI	ACTGG	2 cut(s)	488, 707
BseRI	GAGGAG	4 cut(s)	182, 254, 916, 989
BseSI	GKGCMC	1 cut(s)	1000
BseXI	GCAGC	4 cut(s)	542, 784, 787, 804
BseYI	CCCAGC	1 cut(s)	1081
BsgI	GTGCAG	1 cut(s)	630
BshNI	GGYRCC	1 cut(s)	46
BsiHKAI	GWGCWC	1 cut(s)	1000
BslFI	GGGAC	1 cut(s)	431
BsmAI	GTCTC	3 cut(s)	971, 1064, 1088
BsmFI	GGGAC	1 cut(s)	431
BsmI	GAATGC	1 cut(s)	658
Bsp1286I	GDGCHC	1 cut(s)	1000
Bsp143I	GATC	7 cut(s)	160, 325, 373, 541, 868, 905, 1197
BspCNI	CTCAG	3 cut(s)	277, 730, 1084
BspLI	GGNNCC	4 cut(s)	48, 486, 1215, 1245
BspMI	ACCTGC	1 cut(s)	931
BspPI	GGATC	2 cut(s)	549, 863
BspT107I	GGYRCC	1 cut(s)	46
BsrI	ACTGG	2 cut(s)	488, 707
BssMI	GATC	7 cut(s)	160, 325, 373, 541, 868, 905, 1197
BssSI	CACGAG	2 cut(s)	72, 1190
Bst2BI	CACGAG	2 cut(s)	72, 1190
Bst4CI	ACNGT	4 cut(s)	80, 86, 116, 651
Bst6I	CTCTTC	8 cut(s)	56, 135, 186, 213, 225, 240, 585, 1127
BstC8I	GCNNGC	2 cut(s)	815, 822
BstDEI	CTNAG	5 cut(s)	285, 717, 1092, 1128, 1161
BstF5I	GGATG	7 cut(s)	103, 151, 229, 373, 614, 940, 1033
BstKTI	GATC	7 cut(s)	163, 328, 376, 544, 871, 908, 1200
BstMAI	GTCTC	3 cut(s)	971, 1064, 1088
BstMBI	GATC	7 cut(s)	160, 325, 373, 541, 868, 905, 1197
BstNSI	RCATGY	1 cut(s)	824
BstSFI	CTRYAG	1 cut(s)	1293
BstSLI	GKGCMC	1 cut(s)	1000
BstV1I	GCAGC	4 cut(s)	542, 784, 787, 804
BstV2I	GAAGAC	2 cut(s)	311, 782
BstX2I	RGATCY	3 cut(s)	373, 541, 868
BstYI	RGATCY	3 cut(s)	373, 541, 868
BtsCI	GGATG	7 cut(s)	103, 151, 229, 373, 614, 940, 1033
BtsI	GCAGTG	1 cut(s)	399
BtsIMutI	CAGTG	5 cut(s)	85, 91, 121, 399, 847
BveI	ACCTGC	1 cut(s)	931
Cac8I	GCNNGC	2 cut(s)	815, 822
CaiI	CAGNNNCTG	1 cut(s)	797
CseI	GACGC	1 cut(s)	347
Csp6I	GTAC	1 cut(s)	47
CviAII	CATG	4 cut(s)	313, 515, 821, 1210
CviQI	GTAC	1 cut(s)	47
DdeI	CTNAG	5 cut(s)	285, 717, 1092, 1128, 1161
DpnI	GATC	7 cut(s)	162, 327, 375, 543, 870, 907, 1199
DpnII	GATC	7 cut(s)	160, 325, 373, 541, 868, 905, 1197
DraI	TTTAAA	2 cut(s)	111, 345
DraIII	CACNNNGTG	1 cut(s)	986
Eam1104I	CTCTTC	8 cut(s)	56, 135, 186, 213, 225, 240, 585, 1127
EarI	CTCTTC	8 cut(s)	56, 135, 186, 213, 225, 240, 585, 1127
Eco57I	CTGAAG	1 cut(s)	431
FaeI	CATG	4 cut(s)	316, 518, 824, 1213
FalI	AAGNNNNNCTT	2 cut(s)	363, 395
FaqI	GGGAC	1 cut(s)	431
FatI	CATG	4 cut(s)	312, 514, 820, 1209
FbaI	TGATCA	2 cut(s)	160, 325
Fnu4HI	GCNGC	4 cut(s)	531, 798, 801, 818
FokI	GGATG	7 cut(s)	110, 158, 236, 380, 601, 947, 1040
Fsp4HI	GCNGC	4 cut(s)	531, 798, 801, 818
FspBI	CTAG	3 cut(s)	545, 578, 587
GluI	GCNGC	4 cut(s)	531, 798, 801, 818
GsaI	CCCAGC	1 cut(s)	1085
GsuI	CTGGAG	1 cut(s)	1200
HgaI	GACGC	1 cut(s)	347
Hin1II	CATG	4 cut(s)	316, 518, 824, 1213
HincII	GTYRAC	1 cut(s)	550
HindII	GTYRAC	1 cut(s)	550
HpaI	GTTAAC	1 cut(s)	550
HphI	GGTGA	2 cut(s)	269, 704
Hpy166II	GTNNAC	4 cut(s)	550, 845, 998, 1189
Hpy188III	TCNNGA	8 cut(s)	74, 164, 323, 329, 428, 1190, 1217, 1247
Hpy8I	GTNNAC	4 cut(s)	550, 845, 998, 1189
HpyAV	CCTTC	2 cut(s)	60, 1241
HpyCH4III	ACNGT	4 cut(s)	80, 86, 116, 651
HpyCH4V	TGCA	6 cut(s)	530, 647, 820, 895, 998, 1123
HpyF3I	CTNAG	5 cut(s)	285, 717, 1092, 1128, 1161
Hsp92II	CATG	4 cut(s)	316, 518, 824, 1213
KpnI	GGTACC	1 cut(s)	50
Ksp22I	TGATCA	2 cut(s)	160, 325
KspAI	GTTAAC	1 cut(s)	550
Kzo9I	GATC	7 cut(s)	160, 325, 373, 541, 868, 905, 1197
LmnI	GCTCC	4 cut(s)	133, 331, 484, 1219
Lsp1109I	GCAGC	4 cut(s)	542, 784, 787, 804
LweI	GCATC	6 cut(s)	271, 563, 673, 882, 979, 1094
MaeI	CTAG	3 cut(s)	545, 578, 587
MaeIII	GTNAC	6 cut(s)	74, 80, 116, 359, 705, 784
MalI	GATC	7 cut(s)	162, 327, 375, 543, 870, 907, 1199
MboI	GATC	7 cut(s)	160, 325, 373, 541, 868, 905, 1197
MfeI	CAATTG	2 cut(s)	912, 1074
MflI	RGATCY	3 cut(s)	373, 541, 868
MhlI	GDGCHC	1 cut(s)	1000
MluCI	AATT	6 cut(s)	912, 1049, 1061, 1074, 1204, 1258
MlyI	GAGTC	4 cut(s)	325, 418, 1025, 1174
MmeI	TCCRAC	1 cut(s)	1259
MroXI	GAANNNNTTC	2 cut(s)	375, 455
MseI	TTAA	9 cut(s)	9, 15, 110, 344, 381, 549, 807, 828, 885
MslI	CAYNNNNRTG	2 cut(s)	366, 519
MunI	CAATTG	2 cut(s)	912, 1074
Mva1269I	GAATGC	1 cut(s)	658
NdeII	GATC	7 cut(s)	160, 325, 373, 541, 868, 905, 1197
NlaIII	CATG	4 cut(s)	316, 518, 824, 1213
NlaIV	GGNNCC	4 cut(s)	48, 486, 1215, 1245
NmuCI	GTSAC	6 cut(s)	74, 80, 116, 359, 705, 784
NspI	RCATGY	1 cut(s)	824
PaeI	GCATGC	1 cut(s)	824
PcsI	WCGNNNNNNNCGW	1 cut(s)	1197
PctI	GAATGC	1 cut(s)	658
PdmI	GAANNNNTTC	2 cut(s)	375, 455
PfeI	GAWTC	7 cut(s)	179, 206, 349, 438, 509, 572, 665
PkrI	GCNGC	4 cut(s)	532, 799, 802, 819
PleI	GAGTC	4 cut(s)	324, 418, 1025, 1173
PpsI	GAGTC	4 cut(s)	324, 418, 1025, 1173
PspFI	CCCAGC	1 cut(s)	1081
PspN4I	GGNNCC	4 cut(s)	48, 486, 1215, 1245
PstNI	CAGNNNCTG	1 cut(s)	797
PsuI	RGATCY	3 cut(s)	373, 541, 868
RsaI	GTAC	1 cut(s)	48
RsaNI	GTAC	1 cut(s)	47
RseI	CAYNNNNRTG	2 cut(s)	366, 519
SaqAI	TTAA	9 cut(s)	9, 15, 110, 344, 381, 549, 807, 828, 885
SatI	GCNGC	4 cut(s)	531, 798, 801, 818
Sau3AI	GATC	7 cut(s)	160, 325, 373, 541, 868, 905, 1197
SchI	GAGTC	4 cut(s)	325, 418, 1025, 1174
SduI	GDGCHC	1 cut(s)	1000
SfaNI	GCATC	6 cut(s)	271, 563, 673, 882, 979, 1094
SfcI	CTRYAG	1 cut(s)	1293
SmiMI	CAYNNNNRTG	2 cut(s)	366, 519
SmlI	CTYRAG	3 cut(s)	299, 428, 460
SmoI	CTYRAG	3 cut(s)	299, 428, 460
SphI	GCATGC	1 cut(s)	824
Sse9I	AATT	6 cut(s)	912, 1049, 1061, 1074, 1204, 1258
SspMI	CTAG	3 cut(s)	545, 578, 587
TaaI	ACNGT	4 cut(s)	80, 86, 116, 651
TasI	AATT	6 cut(s)	912, 1049, 1061, 1074, 1204, 1258
TfiI	GAWTC	7 cut(s)	179, 206, 349, 438, 509, 572, 665
Tru1I	TTAA	9 cut(s)	9, 15, 110, 344, 381, 549, 807, 828, 885
Tru9I	TTAA	9 cut(s)	9, 15, 110, 344, 381, 549, 807, 828, 885
TscAI	CASTG	5 cut(s)	85, 91, 121, 399, 847
TseFI	GTSAC	6 cut(s)	74, 80, 116, 359, 705, 784
TseI	GCWGC	4 cut(s)	530, 797, 800, 817
Tsp45I	GTSAC	6 cut(s)	74, 80, 116, 359, 705, 784
TspDTI	ATGAA	6 cut(s)	204, 213, 231, 240, 384, 1198
TspGWI	ACGGA	1 cut(s)	724
TspRI	CASTG	5 cut(s)	85, 91, 121, 399, 847
VneI	GTGCAC	1 cut(s)	996
XapI	RAATTY	2 cut(s)	1061, 1204
XceI	RCATGY	1 cut(s)	824
XmnI	GAANNNNTTC	2 cut(s)	375, 455
XspI	CTAG	3 cut(s)	545, 578, 587

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.