Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0002510

Physical Location & Seq

Genomic Coordinates Forward (+)

6981379 .. 6988203

Gene Structure 6825 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1073400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 174 bp

ATGCTTTTTAATCAGAATATTAGTGAACAAGTTGCTTCTTATATAAAAGACCCAAGCAAAATGGTTGGGCAGATGCAGATGTGGACATTAGCAGTTGCTGTATTTGGCACTGTGACACAATATGATGCTGTTGCACAAGCTGATGGTGGCCCTGAACTTTTGGATGACTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AATF-Che1 TRAUB

Protein Analysis

58

Amino Acids

6.21

Weight (kDa)

4.05

Isoelectric Point (pI)

29.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002510)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G61330 AT5G61330 AT5G61330
fragaria_vesca	FvH4_7g09370 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810 FvH4_7g09810
malus_domestica	MD02G1217000.v1.1 MD02G1263900.v1.1 MD02G1264000.v1.1 MD07G1073400.v1.1 MD07G1101900.v1.1 MD07G1102000.v1.1 MD07G1102300.v1.1 MD07G1103300.v1.1 MD08G1040900.v1.1
prunus_persica	Prupe.2G127200_v2.0.a1 Prupe.2G127200_v2.0.a1 Prupe.2G127200_v2.0.a1 Prupe.2G127200_v2.0.a1
pyrus_communis	pycom02g17860 pycom07g05740 pycom07g05770 pycom07g08340
rosa_chinensis	RchiOBHm_Chr1g0346971
rosa_laevigata	RLG00000028767
rosa_multiflora	Rmu_co8367419.1_g000001 Rmu_sc0001731.1_g000013 Rmu_sc0002705.1_g000017 Rmu_sc0008581.1_g000020
rosa_roxburghii	Rroxscaffold_4G00308010
rosa_samantha	Rh1AG202700 Rh1BG168600 Rh1BG168700 Rh1CG187400 Rh1DG199300 Rh1DG199400
rosa_wichuraiana	Rw1G016980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AluBI	AGCT	1 cut(s)	140
AluI	AGCT	1 cut(s)	140
AlwNI	CAGNNNCTG	1 cut(s)	98
AoxI	GGCC	1 cut(s)	148
AspS9I	GGNCC	1 cut(s)	149
BccI	CCATC	1 cut(s)	137
BmgT120I	GGNCC	1 cut(s)	149
BmsI	GCATC	2 cut(s)	63, 115
BseGI	GGATG	1 cut(s)	169
BshFI	GGCC	1 cut(s)	150
BsnI	GGCC	1 cut(s)	150
BspANI	GGCC	1 cut(s)	150
Bst4CI	ACNGT	1 cut(s)	112
BstF5I	GGATG	1 cut(s)	169
BsuRI	GGCC	1 cut(s)	150
BtsCI	GGATG	1 cut(s)	169
BtsIMutI	CAGTG	1 cut(s)	108
CaiI	CAGNNNCTG	1 cut(s)	98
Cfr13I	GGNCC	1 cut(s)	149
CviJI	RGCY	2 cut(s)	140, 150
CviKI_1	RGCY	2 cut(s)	140, 150
FaiI	YATR	3 cut(s)	42, 44, 123
HaeIII	GGCC	1 cut(s)	150
HinfI	GANTC	1 cut(s)	167
Hpy166II	GTNNAC	2 cut(s)	26, 84
Hpy188I	TCNGA	1 cut(s)	15
Hpy188III	TCNNGA	1 cut(s)	171
Hpy8I	GTNNAC	2 cut(s)	26, 84
HpyCH4III	ACNGT	1 cut(s)	112
HpyCH4V	TGCA	2 cut(s)	76, 134
LpnPI	CCDG	1 cut(s)	165
LweI	GCATC	2 cut(s)	63, 115
MaeIII	GTNAC	1 cut(s)	112
MlyI	GAGTC	1 cut(s)	161
MseI	TTAA	1 cut(s)	9
NmuCI	GTSAC	1 cut(s)	112
PleI	GAGTC	1 cut(s)	161
PpsI	GAGTC	1 cut(s)	161
PspPI	GGNCC	1 cut(s)	149
PstNI	CAGNNNCTG	1 cut(s)	98
SaqAI	TTAA	1 cut(s)	9
Sau96I	GGNCC	1 cut(s)	149
SchI	GAGTC	1 cut(s)	161
SetI	ASST	1 cut(s)	142
SfaNI	GCATC	2 cut(s)	63, 115
SgeI	CNNG	4 cut(s)	41, 66, 149, 164
SspI	AATATT	1 cut(s)	19
TaaI	ACNGT	1 cut(s)	112
Tru1I	TTAA	1 cut(s)	9
Tru9I	TTAA	1 cut(s)	9
TscAI	CASTG	1 cut(s)	115
TseFI	GTSAC	1 cut(s)	112
Tsp45I	GTSAC	1 cut(s)	112
TspRI	CASTG	1 cut(s)	115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.