Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003404

Physical Location & Seq

Genomic Coordinates Reverse (-)

25668755 .. 25671218

Gene Structure 2464 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G64150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1134 bp

ATGATAAGAATCTTCCCAAGTCTACGGTTAACCTCTTTGCTCTCTGCCGCTAAACCTCTTTGCTCATCTTCTCCGGCGAAAAAACCACCGCAATACACGTCGCTTACAGAGTCAAAATCCTCTCGGCCGACTAAGTCTCTCAGCATAACTCCCAAGACACCGCTATACCTTAGGACGCCGTCGCACGCAACTTCTCTATCGGAGGTTTGGAAATGGCACGACTGGGCGAAAGATCTGGCGTCCTCCGTAGAGGAATCTTCGAAGAATTCCGAAGATACTCTTGACTCTGTCATTCTCCACCGTGAGCTAAAATGGCTGATCGAAGACTCAATCGTAGACGATCCTTTAGTGATTCTTCATAGAAGCGAAATCGCGGACAACGGCGAGAAGAATGTGAAATTGAGAGCGTCGTTGGAGGAGCTTTACGATTTATGGAGGCAGAGGATCGAGAAGCGTCGGCCGTTTCAGTACGTCGTCGGATGCGAGCATTGGAGAGATCTAGTGTTGTGCGTTGAGGAAGGGGTTCTAATTCCGAGACCGGAGACGGAACTGATCGTCGATATGGTGGAGGAGCTTGTAACGAGAGATGAATGGTTTAAGAAAGATATTTGGGCTGATCTTGGGACAGGAAGTGGTGCTATTGCGATCGGCATTGCTAAAGTCTTGGGAAGCCGTGGGAGAGTTATAGCTACAGATCTCAGTCCGGTGGCGATCGCCGTCGCCGGCCACAATGTGCAGAGATACAGCCTTGAGGGGATGATTGAAGTGAGAGAAGGATCTTGGTTTGAGCCTTTGAAAGATCTTGAAGGAAAACTTGTGGGGCTTGTGAGTAATCCACCATACATACCAAGTGATGACATTCCAGGCCTACAAGCTGAAGTTGGTAGACACGAACCGAAACTTGCATTGGATGGTGGTATTGATGGAACTGATAGTCTTTTTCATCTCTGTCATGGGGCTTCTCGGATGCTTCAACCTGGTGGCTTTTTCGTTTTCGAGACTAATGGAGAGAAGCAAAGCAAGATGATCGTAGATTACATGATGACCAGTGATCTCAAAGACTGTTTCTCTGATTTGAAGATAGTTTCTGATTTTGCTGGAATCAATCGGTTCGTGACTGGCTTTCGTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MTS Methyltransf_31 PrmA

Protein Analysis

377

Amino Acids

42.17

Weight (kDa)

5.5

Isoelectric Point (pI)

40.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PrmA	PF06325	182 - 256	8e-07	Ribosomal protein L11 methyltransferase (PrmA)
MTS	PF05175	202 - 281	2e-06	Methyltransferase small domain
Methyltransf_31	PF13847	206 - 266	8.1e-06	Methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003404)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64150
fragaria_vesca	FvH4_3g16091
malus_domestica	MD05G1214000.v1.1 MD05G1214300.v1.1 MD10G1197800.v1.1
prunus_persica	Prupe.4G144100_v2.0.a1
pyrus_communis	pycom10g17050
rosa_chinensis	RchiOBHm_Chr5g0027061 RchiOBHm_Chr6g0281451
rosa_laevigata	RLG00000009431 RLG00000032986
rosa_multiflora	Rmu_co7998874.1_g000001 Rmu_sc0000847.1_g000007 Rmu_sc0000882.1_g000023 Rmu_sc0001866.1_g000008 Rmu_sc0006065.1_g000029
rosa_roxburghii	Rroxscaffold_1G00052430 Rroxscaffold_2G00135560 Rroxscaffold_6G00430700
rosa_rugosa	Rorug02G0601800 Rorug05G0096900 Rorug05G0097000
rosa_samantha	Rh1CG018500 Rh1DG015600 Rh3AG054200 Rh3BG055600 Rh3CG054900 Rh4BG038500 Rh5AG190600 Rh5BG188200 Rh5CG208000 Rh5DG190000 Rh5DG541600 Rh6BG255900 Rh6DG247400
rosa_wichuraiana	Rw5G017360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	22, 336, 886
AccII	CGCG	1 cut(s)	374
AciI	CCGC	4 cut(s)	48, 89, 161, 374
AclWI	GGATC	3 cut(s)	335, 452, 784
AcoI	YGGCCR	3 cut(s)	125, 458, 724
AcsI	RAATTY	1 cut(s)	265
AcuI	CTGAAG	1 cut(s)	897
AcyI	GRCGYC	2 cut(s)	176, 239
AdeI	CACNNNGTG	1 cut(s)	733
AfaI	GTAC	1 cut(s)	470
AflIII	ACRYGT	1 cut(s)	96
AgsI	TTSAA	5 cut(s)	764, 796, 806, 974, 1078
AjiI	CACGTC	1 cut(s)	99
AjnI	CCWGG	2 cut(s)	862, 976
AjuI	GAANNNNNNNTTGG	2 cut(s)	890, 922
AluBI	AGCT	5 cut(s)	307, 421, 574, 689, 875
AluI	AGCT	5 cut(s)	307, 421, 574, 689, 875
Alw26I	GTCTC	4 cut(s)	141, 529, 536, 992
AlwI	GGATC	3 cut(s)	335, 452, 784
AoxI	GGCC	4 cut(s)	125, 458, 724, 865
ApoI	RAATTY	1 cut(s)	265
AsiSI	GCGATCGC	1 cut(s)	714
Asp700I	GAANNNNTTC	1 cut(s)	522
AsuII	TTCGAA	1 cut(s)	260
AxyI	CCTNAGG	1 cut(s)	170
BbsI	GAAGAC	1 cut(s)	330
BccI	CCATC	2 cut(s)	905, 917
BceAI	ACGGC	5 cut(s)	163, 397, 445, 657, 701
BcgI	CGANNNNNNTGC	2 cut(s)	1009, 1043
BciT130I	CCWGG	2 cut(s)	864, 978
BcoDI	GTCTC	4 cut(s)	141, 529, 536, 992
BfaI	CTAG	1 cut(s)	500
BfmI	CTRYAG	1 cut(s)	690
BglII	AGATCT	4 cut(s)	232, 496, 694, 799
BisI	GCNGC	1 cut(s)	48
BlsI	GCNGC	1 cut(s)	49
Bme1390I	CCNGG	2 cut(s)	864, 978
BmgBI	CACGTC	1 cut(s)	99
BmrFI	CCNGG	2 cut(s)	864, 978
BmrI	ACTGGG	1 cut(s)	232
BmsI	GCATC	2 cut(s)	470, 957
BmuI	ACTGGG	1 cut(s)	232
BpiI	GAAGAC	1 cut(s)	330
Bpu14I	TTCGAA	1 cut(s)	260
BpuEI	CTTGAG	1 cut(s)	770
BsaBI	GATNNNNATC	1 cut(s)	8
BsaHI	GRCGYC	2 cut(s)	176, 239
BsaI	GGTCTC	1 cut(s)	529
BsaJI	CCNNGG	1 cut(s)	673
BsaWI	WCCGGW	2 cut(s)	538, 703
Bse118I	RCCGGY	1 cut(s)	722
Bse1I	ACTGG	3 cut(s)	227, 1047, 1123
Bse21I	CCTNAGG	1 cut(s)	170
Bse3DI	GCAATG	1 cut(s)	651
Bse8I	GATNNNNATC	1 cut(s)	8
BseBI	CCWGG	2 cut(s)	864, 978
BseDI	CCNNGG	1 cut(s)	673
BseGI	GGATG	4 cut(s)	485, 762, 916, 972
BseJI	GATNNNNATC	1 cut(s)	8
BseMI	GCAATG	1 cut(s)	651
BseMII	CTCAG	2 cut(s)	154, 712
BseNI	ACTGG	3 cut(s)	227, 1047, 1123
BseRI	GAGGAG	2 cut(s)	431, 584
BseX3I	CGGCCG	2 cut(s)	125, 458
BsgI	GTGCAG	1 cut(s)	755
Bsh1236I	CGCG	1 cut(s)	374
Bsh1285I	CGRYCG	4 cut(s)	128, 461, 648, 714
BshFI	GGCC	4 cut(s)	127, 460, 726, 867
BsiEI	CGRYCG	4 cut(s)	128, 461, 648, 714
BsiSI	CCGG	4 cut(s)	74, 539, 704, 723
BslFI	GGGAC	1 cut(s)	637
BsmAI	GTCTC	4 cut(s)	141, 529, 536, 992
BsmBI	CGTCTC	1 cut(s)	536
BsmFI	GGGAC	1 cut(s)	637
BsnI	GGCC	4 cut(s)	127, 460, 726, 867
Bso31I	GGTCTC	1 cut(s)	529
Bsp119I	TTCGAA	1 cut(s)	260
BspACI	CCGC	4 cut(s)	48, 89, 161, 374
BspANI	GGCC	4 cut(s)	127, 460, 726, 867
BspCNI	CTCAG	2 cut(s)	153, 711
BspFNI	CGCG	1 cut(s)	374
BspPI	GGATC	3 cut(s)	335, 452, 784
BspT104I	TTCGAA	1 cut(s)	260
BspTNI	GGTCTC	1 cut(s)	529
BsrDI	GCAATG	1 cut(s)	651
BsrFI	RCCGGY	1 cut(s)	722
BsrI	ACTGG	3 cut(s)	227, 1047, 1123
BssAI	RCCGGY	1 cut(s)	722
BssECI	CCNNGG	1 cut(s)	673
BssNI	GRCGYC	2 cut(s)	176, 239
Bst2UI	CCWGG	2 cut(s)	864, 978
Bst4CI	ACNGT	3 cut(s)	27, 302, 1064
BstACI	GRCGYC	2 cut(s)	176, 239
BstBI	TTCGAA	1 cut(s)	260
BstC8I	GCNNGC	3 cut(s)	186, 485, 724
BstDEI	CTNAG	4 cut(s)	132, 140, 170, 698
BstDSI	CCRYGG	1 cut(s)	673
BstF5I	GGATG	4 cut(s)	485, 762, 916, 972
BstFNI	CGCG	1 cut(s)	374
BstMAI	GTCTC	4 cut(s)	141, 529, 536, 992
BstMCI	CGRYCG	4 cut(s)	128, 461, 648, 714
BstMWI	GCNNNNNNNGC	1 cut(s)	313
BstNI	CCWGG	2 cut(s)	864, 978
BstSCI	CCNGG	2 cut(s)	862, 976
BstSFI	CTRYAG	1 cut(s)	690
BstUI	CGCG	1 cut(s)	374
BstV2I	GAAGAC	1 cut(s)	330
BstX2I	RGATCY	5 cut(s)	232, 496, 694, 776, 799
BstYI	RGATCY	5 cut(s)	232, 496, 694, 776, 799
BstZI	CGGCCG	2 cut(s)	125, 458
Bsu36I	CCTNAGG	1 cut(s)	170
BsuRI	GGCC	4 cut(s)	127, 460, 726, 867
BtgI	CCRYGG	1 cut(s)	673
BtrI	CACGTC	1 cut(s)	99
BtsCI	GGATG	4 cut(s)	485, 762, 916, 972
BtsIMutI	CAGTG	1 cut(s)	1054
Cac8I	GCNNGC	3 cut(s)	186, 485, 724
Cfr10I	RCCGGY	1 cut(s)	722
CseI	GACGC	4 cut(s)	184, 228, 396, 443
CsiI	ACCWGGT	1 cut(s)	976
Csp6I	GTAC	1 cut(s)	469
CviAII	CATG	2 cut(s)	953, 1039
CviQI	GTAC	1 cut(s)	469
DdeI	CTNAG	4 cut(s)	132, 140, 170, 698
DraIII	CACNNNGTG	1 cut(s)	733
EaeI	YGGCCR	3 cut(s)	125, 458, 724
EagI	CGGCCG	2 cut(s)	125, 458
EclXI	CGGCCG	2 cut(s)	125, 458
Eco147I	AGGCCT	1 cut(s)	867
Eco31I	GGTCTC	1 cut(s)	529
Eco52I	CGGCCG	2 cut(s)	125, 458
Eco57I	CTGAAG	1 cut(s)	897
Eco81I	CCTNAGG	1 cut(s)	170
EcoRI	GAATTC	1 cut(s)	265
EcoRII	CCWGG	2 cut(s)	862, 976
Esp3I	CGTCTC	1 cut(s)	536
FaeI	CATG	2 cut(s)	956, 1042
FalI	AAGNNNNNCTT	4 cut(s)	264, 296, 798, 830
FaqI	GGGAC	1 cut(s)	637
FatI	CATG	2 cut(s)	952, 1038
FblI	GTMKAC	3 cut(s)	22, 336, 886
Fnu4HI	GCNGC	1 cut(s)	48
FokI	GGATG	4 cut(s)	492, 769, 923, 979
Fsp4HI	GCNGC	1 cut(s)	48
FspBI	CTAG	1 cut(s)	500
GluI	GCNGC	1 cut(s)	48
HaeIII	GGCC	4 cut(s)	127, 460, 726, 867
HapII	CCGG	4 cut(s)	74, 539, 704, 723
HgaI	GACGC	4 cut(s)	184, 228, 396, 443
Hin1I	GRCGYC	2 cut(s)	176, 239
Hin1II	CATG	2 cut(s)	956, 1042
HincII	GTYRAC	1 cut(s)	30
HindII	GTYRAC	1 cut(s)	30
HinfI	GANTC	7 cut(s)	9, 110, 254, 284, 326, 352, 1101
HpaI	GTTAAC	1 cut(s)	30
HpaII	CCGG	4 cut(s)	74, 539, 704, 723
Hpy166II	GTNNAC	4 cut(s)	23, 30, 337, 887
Hpy188I	TCNGA	8 cut(s)	202, 271, 479, 534, 966, 1072, 1090, 1133
Hpy188III	TCNNGA	5 cut(s)	281, 448, 803, 997, 1114
Hpy8I	GTNNAC	4 cut(s)	23, 30, 337, 887
Hpy99I	CGWCG	8 cut(s)	103, 184, 412, 459, 476, 479, 560, 722
HpyAV	CCTTC	3 cut(s)	512, 767, 800
HpyCH4III	ACNGT	3 cut(s)	27, 302, 1064
HpyCH4IV	ACGT	2 cut(s)	98, 471
HpyCH4V	TGCA	2 cut(s)	736, 905
HpyF10VI	GCNNNNNNNGC	1 cut(s)	313
HpyF3I	CTNAG	4 cut(s)	132, 140, 170, 698
HpySE526I	ACGT	2 cut(s)	98, 471
Hsp92I	GRCGYC	2 cut(s)	176, 239
Hsp92II	CATG	2 cut(s)	956, 1042
KroI	GCCGGC	1 cut(s)	722
KroNI	GCCGGC	1 cut(s)	724
KspAI	GTTAAC	1 cut(s)	30
LmnI	GCTCC	2 cut(s)	418, 571
LweI	GCATC	2 cut(s)	470, 957
MabI	ACCWGGT	1 cut(s)	976
MaeI	CTAG	1 cut(s)	500
MaeII	ACGT	2 cut(s)	98, 471
MaeIII	GTNAC	2 cut(s)	577, 1114
MboII	GAAGA	9 cut(s)	4, 60, 249, 274, 284, 335, 347, 400, 1090
MflI	RGATCY	5 cut(s)	232, 496, 694, 776, 799
MluCI	AATT	3 cut(s)	265, 398, 528
MlyI	GAGTC	3 cut(s)	119, 278, 320
MmeI	TCCRAC	2 cut(s)	393, 457
MroNI	GCCGGC	1 cut(s)	722
MroXI	GAANNNNTTC	1 cut(s)	522
MseI	TTAA	2 cut(s)	29, 597
MspI	CCGG	4 cut(s)	74, 539, 704, 723
MspR9I	CCNGG	2 cut(s)	864, 978
MvaI	CCWGG	2 cut(s)	864, 978
MvnI	CGCG	1 cut(s)	374
MwoI	GCNNNNNNNGC	1 cut(s)	313
NaeI	GCCGGC	1 cut(s)	724
NgoMIV	GCCGGC	1 cut(s)	722
NlaIII	CATG	2 cut(s)	956, 1042
NmeAIII	GCCGAG	1 cut(s)	103
NmuCI	GTSAC	1 cut(s)	1114
NspV	TTCGAA	1 cut(s)	260
PceI	AGGCCT	1 cut(s)	867
PcsI	WCGNNNNNNNCGW	1 cut(s)	480
PdiI	GCCGGC	1 cut(s)	724
PdmI	GAANNNNTTC	1 cut(s)	522
PfeI	GAWTC	4 cut(s)	9, 254, 352, 1101
PflFI	GACNNNGTC	3 cut(s)	133, 178, 287
PkrI	GCNGC	1 cut(s)	49
Ple19I	CGATCG	2 cut(s)	648, 714
PleI	GAGTC	3 cut(s)	118, 278, 320
PpsI	GAGTC	3 cut(s)	118, 278, 320
Psp6I	CCWGG	2 cut(s)	862, 976
PspGI	CCWGG	2 cut(s)	862, 976
PsuI	RGATCY	5 cut(s)	232, 496, 694, 776, 799
PsyI	GACNNNGTC	3 cut(s)	133, 178, 287
PvuI	CGATCG	2 cut(s)	648, 714
RgaI	GCGATCGC	1 cut(s)	714
RsaI	GTAC	1 cut(s)	470
RsaNI	GTAC	1 cut(s)	469
SaqAI	TTAA	2 cut(s)	29, 597
SatI	GCNGC	1 cut(s)	48
SchI	GAGTC	3 cut(s)	119, 278, 320
ScrFI	CCNGG	2 cut(s)	864, 978
SexAI	ACCWGGT	1 cut(s)	976
SfaAI	GCGATCGC	1 cut(s)	714
SfaNI	GCATC	2 cut(s)	470, 957
SfcI	CTRYAG	1 cut(s)	690
SfuI	TTCGAA	1 cut(s)	260
SgfI	GCGATCGC	1 cut(s)	714
SmlI	CTYRAG	1 cut(s)	749
SmoI	CTYRAG	1 cut(s)	749
Sse9I	AATT	3 cut(s)	265, 398, 528
SseBI	AGGCCT	1 cut(s)	867
SsiI	CCGC	4 cut(s)	48, 89, 161, 374
SspMI	CTAG	1 cut(s)	500
StuI	AGGCCT	1 cut(s)	867
StyD4I	CCNGG	2 cut(s)	862, 976
TaaI	ACNGT	3 cut(s)	27, 302, 1064
TaiI	ACGT	2 cut(s)	101, 474
TaqI	TCGA	5 cut(s)	260, 321, 447, 558, 996
TasI	AATT	3 cut(s)	265, 398, 528
TauI	GCSGC	1 cut(s)	50
TfiI	GAWTC	4 cut(s)	9, 254, 352, 1101
Tru1I	TTAA	2 cut(s)	29, 597
Tru9I	TTAA	2 cut(s)	29, 597
TscAI	CASTG	1 cut(s)	1054
TseFI	GTSAC	1 cut(s)	1114
Tsp45I	GTSAC	1 cut(s)	1114
TspDTI	ATGAA	3 cut(s)	347, 603, 932
TspGWI	ACGGA	2 cut(s)	235, 560
TspRI	CASTG	1 cut(s)	1054
Tth111I	GACNNNGTC	3 cut(s)	133, 178, 287
XapI	RAATTY	1 cut(s)	265
XmiI	GTMKAC	3 cut(s)	22, 336, 886
XmnI	GAANNNNTTC	1 cut(s)	522
XspI	CTAG	1 cut(s)	500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.